Rmu_sc0001047.1_g000050

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001047.1
OG0000636
Physical Location & Seq
Forward (+)
239035 .. 239385
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001047.1_g000050.1.cds

Sequence Viewer

Length: 351 bp
atgagcctagaagaccttgatgtgggggttgtgaaaacagtccaccccactgattctaatttactgggaacctatctctacaatagaatcaaatccccaaccccaattggaggaaaacaaacattccctgagattgaaatatatggcaccacaggtttaccaccatgggatatttggagaatttatgagccttccaaatttccacatcaagattatatctatttcttctcccgagtcaagaagttgagttcccgttgttttcgcagaattggctacgatgggggcacgtggagcgagactgaagctgctaaacctgtctatgtcagtggaattgaagagccttatgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

116

Amino Acids

13.27

Weight (kDa)

6.09

Isoelectric Point (pI)

58.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 146
AcsI RAATTY 2 cut(s) 180, 197
AcuI CTGAAG 1 cut(s) 321
AcvI CACGTG 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 22, 110
AgsI TTSAA 2 cut(s) 137, 335
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 290
Ama87I CYCGRG 1 cut(s) 231
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 2 cut(s) 180, 197
AvaI CYCGRG 1 cut(s) 231
BaeGI GKGCMC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 146
BbrPI CACGTG 1 cut(s) 288
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 8
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 231
BmiI GGNNCC 2 cut(s) 70, 148
BmrI ACTGGG 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 110
Bse1I ACTGG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 22, 110
BseMII CTCAG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 69
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 1 cut(s) 292
BshNI GGYRCC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 22, 110
BsmAI GTCTC 1 cut(s) 290
BsoBI CYCGRG 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 287
Bsp19I CCATGG 1 cut(s) 164
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 70, 148
BspQI GCTCTTC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 146
BsrI ACTGG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 164
Bst4CI ACNGT 1 cut(s) 40
Bst6I CTCTTC 1 cut(s) 330
BstBAI YACGTR 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 164
BstMAI GTCTC 1 cut(s) 290
BstMWI GCNNNNNNNGC 2 cut(s) 270, 291
BstSLI GKGCMC 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 292
BstV2I GAAGAC 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 48, 331
CviAII CATG 1 cut(s) 165
CviJI RGCY 5 cut(s) 6, 190, 273, 305, 340
CviKI_1 RGCY 5 cut(s) 6, 190, 273, 305, 340
DdeI CTNAG 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 321
Eco72I CACGTG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
FaeI CATG 1 cut(s) 168
FaiI YATR 7 cut(s) 142, 144, 166, 186, 216, 321, 345
FatI CATG 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 8
GluI GCNGC 1 cut(s) 306
Hin1II CATG 1 cut(s) 168
HinfI GANTC 3 cut(s) 53, 87, 234
Hpy166II GTNNAC 2 cut(s) 43, 158
Hpy188III TCNNGA 3 cut(s) 209, 231, 238
Hpy8I GTNNAC 2 cut(s) 43, 158
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 40
HpyCH4IV ACGT 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 270, 291
HpyF3I CTNAG 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 1 cut(s) 291
LpnPI CCDG 4 cut(s) 50, 138, 141, 327
Lsp1109I GCAGC 1 cut(s) 292
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 287
MboII GAAGA 3 cut(s) 23, 217, 347
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 6 cut(s) 58, 105, 180, 197, 267, 330
MlyI GAGTC 1 cut(s) 243
MnlI CCTC 1 cut(s) 104
MunI CAATTG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 270, 291
NcoI CCATGG 1 cut(s) 164
NlaIII CATG 1 cut(s) 168
NlaIV GGNNCC 2 cut(s) 70, 148
PciSI GCTCTTC 1 cut(s) 330
PfeI GAWTC 2 cut(s) 53, 87
PkrI GCNGC 1 cut(s) 307
PleI GAGTC 1 cut(s) 242
PmaCI CACGTG 1 cut(s) 288
PmlI CACGTG 1 cut(s) 288
PpsI GAGTC 1 cut(s) 242
Ppu21I YACGTR 1 cut(s) 288
PspCI CACGTG 1 cut(s) 288
PspN4I GGNNCC 2 cut(s) 70, 148
SapI GCTCTTC 1 cut(s) 330
SatI GCNGC 1 cut(s) 306
SchI GAGTC 1 cut(s) 243
SduI GDGCHC 1 cut(s) 287
SetI ASST 6 cut(s) 18, 74, 157, 290, 307, 316
Sse9I AATT 6 cut(s) 58, 105, 180, 197, 267, 330
SspMI CTAG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 40
TaiI ACGT 1 cut(s) 290
TasI AATT 6 cut(s) 58, 105, 180, 197, 267, 330
TfiI GAWTC 2 cut(s) 53, 87
TscAI CASTG 2 cut(s) 55, 331
TseI GCWGC 1 cut(s) 305
TspRI CASTG 2 cut(s) 55, 331
XapI RAATTY 2 cut(s) 180, 197
XcmI CCANNNNNNNNNTGG 1 cut(s) 171
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.