Rw7G039600
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000636
Physical Location & Seq
Forward (+)
60971806 .. 60972987
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G039600.1

Sequence Viewer

Length: 1152 bp
ATGGCTCTCGTAGATCAATTCATGACTCTGGATCAACTTGATGTGGGTGTGGTGAAGACGTTTCACCCTACTGAAGCTGAGTTGGTGGGTTTCTTTCTATACAACAAGATTTCCATGGCCTCAAACCCAGGCAATCATATTCAGACCTTCCCTGAAATTTGTATATACGGCGAGACAGGCTTACCACCTTGGGAGATATGGAGGGTATATCAGCAATTCAAGTTTCCCCACCAAGATTTTCTCTACTTCTTCTCCTGGGCCAAGAAAGTGAGCCCCAACAAATCTCGCAACTCTCGCACGGTTGGCTCTGATGGAGGAACGTGGAGCGAGACGGAAGCCGGTAGGCCTGTGTATATCAGTGGAAGTGAAGAGGCGTTTGGGAAAGTCAGGAAGTTTCGGTATGAAAAGAACAAGGACAAAACGTTTGTGCATCACGCTGCTTGGTTGATGGAGGAGTACACCATCAACCAAGCACCAGATCTGGCTTTGTGCCGACTCAAATTCAATGATAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCCGATGAGACTAATGAGGATCAGAATGTGAGAAGCAAAAAGTGTTTGAAAAACCGAAAAGTTGAAGCGAGAAGAGATCAAACTAGCAGTGCTTCCTTTGCTACTAATACTTCACAGCTAATTCTCTCTCCCTATCATCATGAAGATGATCAAGTGGTTCAGGTGGTTCAGGAGAACAATTACGATTATGACGAGCTGCAGCAGATCCTCTTTAGTGATGATGATTGTATGGATGAGAGTCTAATCTTCTCTCCCACTATCTTGTTTGATGATGCTCAGCTTATGGCTTCTGTTGACCAATCAATAGCCAGTGAGCAACAACAACAACAACAAGATTCGGATTATTCACTTGCGCCGCAACAGCAATTGGAACCTGATAATAGGTGTCAAGAGGAGGACCAAATACAACTACAACAACAAGATCAGCCCTCTTCCTCTCATTCTCACGAGCAGCAGCAGCTCATCGGTGATGACGATCTGATGATTTCTGGCCAACGTGACTATAATATTCCACTCGATAACGACTTCTTATGGTCAGATGAATTTAATGGACTCTTTACTCATGAAGATCAGCTGGGAGCTCTGCCATGGTGGGAAACTGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

383

Amino Acids

44.31

Weight (kDa)

4.65

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 154 2.3e-17 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 899
AclI AACGTT 1 cut(s) 422
AclWI GGATC 3 cut(s) 39, 570, 742
AcoI YGGCCR 1 cut(s) 1033
AcsI RAATTY 3 cut(s) 156, 500, 1085
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 1 cut(s) 458
AgsI TTSAA 4 cut(s) 220, 505, 592, 608
AjnI CCWGG 2 cut(s) 127, 254
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AloI GAACNNNNNNTCC 2 cut(s) 526, 558
AluBI AGCT 7 cut(s) 77, 661, 739, 823, 1003, 1117, 1124
AluI AGCT 7 cut(s) 77, 661, 739, 823, 1003, 1117, 1124
Alw21I GWGCWC 1 cut(s) 1126
Alw26I GTCTC 3 cut(s) 167, 323, 545
AlwI GGATC 3 cut(s) 39, 570, 742
AoxI GGCC 4 cut(s) 117, 258, 344, 1033
ApeKI GCWGC 6 cut(s) 437, 739, 742, 994, 997, 1000
ApoI RAATTY 3 cut(s) 156, 500, 1085
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 2 cut(s) 258, 940
AsuHPI GGTGA 3 cut(s) 56, 64, 1022
AvaII GGWCC 1 cut(s) 940
BalI TGGCCA 1 cut(s) 1035
BanII GRGCYC 2 cut(s) 275, 1126
BauI CACGAG 1 cut(s) 989
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 1126
BbvI GCAGC 6 cut(s) 424, 726, 754, 1006, 1009, 1012
BccI CCATC 3 cut(s) 305, 442, 470
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 129, 256
BclI TGATCA 1 cut(s) 691
BcoDI GTCTC 3 cut(s) 167, 323, 545
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 740
BglII AGATCT 1 cut(s) 478
BisI GCNGC 7 cut(s) 438, 740, 743, 899, 995, 998, 1001
BlpI GCTNAGC 1 cut(s) 819
BlsI GCNGC 7 cut(s) 439, 741, 744, 900, 996, 999, 1002
Bme1390I CCNGG 2 cut(s) 129, 256
Bme18I GGWCC 1 cut(s) 940
BmgT120I GGNCC 2 cut(s) 258, 940
BmiI GGNNCC 1 cut(s) 915
BmrFI CCNGG 2 cut(s) 129, 256
BmsI GCATC 2 cut(s) 439, 805
BpiI GAAGAC 1 cut(s) 62
Bpu1102I GCTNAGC 1 cut(s) 819
BsaBI GATNNNNATC 1 cut(s) 1017
BsaJI CCNNGG 5 cut(s) 114, 127, 188, 255, 1130
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 1017
BseBI CCWGG 2 cut(s) 129, 256
BseDI CCNNGG 5 cut(s) 114, 127, 188, 255, 1130
BseGI GGATG 1 cut(s) 781
BseJI GATNNNNATC 1 cut(s) 1017
BseMII CTCAG 2 cut(s) 69, 833
BseNI ACTGG 1 cut(s) 852
BseRI GAGGAG 3 cut(s) 467, 531, 950
BseXI GCAGC 6 cut(s) 424, 726, 754, 1006, 1009, 1012
BseYI CCCAGC 1 cut(s) 1117
BshFI GGCC 4 cut(s) 119, 260, 346, 1035
BsiHKAI GWGCWC 1 cut(s) 1126
BsiSI CCGG 1 cut(s) 339
BsmAI GTCTC 3 cut(s) 167, 323, 545
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 4 cut(s) 119, 260, 346, 1035
Bsp1286I GDGCHC 2 cut(s) 275, 1126
Bsp1720I GCTNAGC 1 cut(s) 819
Bsp19I CCATGG 2 cut(s) 114, 1130
BspACI CCGC 1 cut(s) 899
BspANI GGCC 4 cut(s) 119, 260, 346, 1035
BspCNI CTCAG 2 cut(s) 70, 832
BspHI TCATGA 3 cut(s) 21, 682, 1105
BspLI GGNNCC 1 cut(s) 915
BspMAI CTGCAG 1 cut(s) 744
BspPI GGATC 3 cut(s) 39, 570, 742
BsrFI RCCGGY 1 cut(s) 338
BsrI ACTGG 1 cut(s) 852
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 5 cut(s) 114, 127, 188, 255, 1130
BssSI CACGAG 1 cut(s) 989
BssT1I CCWWGG 3 cut(s) 114, 188, 1130
Bst2BI CACGAG 1 cut(s) 989
Bst2UI CCWGG 2 cut(s) 129, 256
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 4 cut(s) 363, 533, 610, 979
BstDEI CTNAG 2 cut(s) 78, 819
BstDSI CCRYGG 2 cut(s) 114, 1130
BstF5I GGATG 1 cut(s) 781
BstHHI GCGC 1 cut(s) 898
BstMAI GTCTC 3 cut(s) 167, 323, 545
BstMWI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 641, 904, 1000
BstNI CCWGG 2 cut(s) 129, 256
BstSCI CCNGG 2 cut(s) 127, 254
BstSFI CTRYAG 1 cut(s) 740
BstV1I GCAGC 6 cut(s) 424, 726, 754, 1006, 1009, 1012
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 2 cut(s) 478, 747
BstYI RGATCY 2 cut(s) 478, 747
BsuRI GGCC 4 cut(s) 119, 260, 346, 1035
BtgI CCRYGG 2 cut(s) 114, 1130
BtsCI GGATG 1 cut(s) 781
BtsI GCAGTG 1 cut(s) 637
BtsIMutI CAGTG 3 cut(s) 364, 637, 859
CciI TCATGA 3 cut(s) 21, 682, 1105
CfoI GCGC 1 cut(s) 898
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 258, 940
Csp6I GTAC 1 cut(s) 457
CviAII CATG 5 cut(s) 22, 115, 683, 1106, 1131
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 2 cut(s) 78, 819
EaeI YGGCCR 1 cut(s) 1033
Eam1104I CTCTTC 4 cut(s) 363, 533, 610, 979
EarI CTCTTC 4 cut(s) 363, 533, 610, 979
Ecl136II GAGCTC 1 cut(s) 1124
Eco130I CCWWGG 3 cut(s) 114, 188, 1130
Eco147I AGGCCT 1 cut(s) 346
Eco24I GRGCYC 2 cut(s) 275, 1126
Eco47I GGWCC 1 cut(s) 940
Eco53kI GAGCTC 1 cut(s) 1124
Eco57I CTGAAG 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 1124
EcoRII CCWGG 2 cut(s) 127, 254
EcoT14I CCWWGG 3 cut(s) 114, 188, 1130
EcoT38I GRGCYC 2 cut(s) 275, 1126
ErhI CCWWGG 3 cut(s) 114, 188, 1130
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 5 cut(s) 25, 118, 686, 1109, 1134
FatI CATG 5 cut(s) 21, 114, 682, 1105, 1130
FbaI TGATCA 1 cut(s) 691
Fnu4HI GCNGC 7 cut(s) 438, 740, 743, 899, 995, 998, 1001
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 2 cut(s) 275, 1126
Fsp4HI GCNGC 7 cut(s) 438, 740, 743, 899, 995, 998, 1001
FspBI CTAG 1 cut(s) 627
GlaI GCGC 1 cut(s) 897
GluI GCNGC 7 cut(s) 438, 740, 743, 899, 995, 998, 1001
GsaI CCCAGC 1 cut(s) 1121
HaeIII GGCC 4 cut(s) 119, 260, 346, 1035
HapII CCGG 1 cut(s) 339
HhaI GCGC 1 cut(s) 898
Hin1II CATG 5 cut(s) 25, 118, 686, 1109, 1134
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HinfI GANTC 5 cut(s) 25, 495, 781, 878, 1095
HpaII CCGG 1 cut(s) 339
HphI GGTGA 3 cut(s) 56, 64, 1022
Hpy166II GTNNAC 2 cut(s) 459, 838
Hpy188I TCNGA 7 cut(s) 144, 310, 547, 567, 883, 1023, 1081
Hpy188III TCNNGA 8 cut(s) 22, 29, 388, 683, 713, 932, 989, 1106
Hpy8I GTNNAC 2 cut(s) 459, 838
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 4 cut(s) 59, 320, 422, 1039
HpyCH4V TGCA 2 cut(s) 430, 742
HpyF10VI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 641, 904, 1000
HpyF3I CTNAG 2 cut(s) 78, 819
HpySE526I ACGT 4 cut(s) 59, 320, 422, 1039
Hsp92II CATG 5 cut(s) 25, 118, 686, 1109, 1134
HspAI GCGC 1 cut(s) 896
Ksp22I TGATCA 1 cut(s) 691
LmnI GCTCC 2 cut(s) 324, 1121
Lsp1109I GCAGC 6 cut(s) 424, 726, 754, 1006, 1009, 1012
LweI GCATC 2 cut(s) 439, 805
MaeI CTAG 1 cut(s) 627
MaeII ACGT 4 cut(s) 59, 320, 422, 1039
MaeIII GTNAC 1 cut(s) 1040
MfeI CAATTG 1 cut(s) 908
MflI RGATCY 2 cut(s) 478, 747
MhlI GDGCHC 2 cut(s) 275, 1126
MlsI TGGCCA 1 cut(s) 1035
MluCI AATT 8 cut(s) 17, 156, 215, 500, 663, 721, 908, 1085
MluNI TGGCCA 1 cut(s) 1035
MlyI GAGTC 4 cut(s) 19, 489, 790, 1089
Mox20I TGGCCA 1 cut(s) 1035
MscI TGGCCA 1 cut(s) 1035
MseI TTAA 1 cut(s) 1089
MslI CAYNNNNRTG 1 cut(s) 687
Msp20I TGGCCA 1 cut(s) 1035
MspA1I CMGCKG 1 cut(s) 1117
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 2 cut(s) 129, 256
MunI CAATTG 1 cut(s) 908
MvaI CCWGG 2 cut(s) 129, 256
MwoI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 641, 904, 1000
NcoI CCATGG 2 cut(s) 114, 1130
NlaIII CATG 5 cut(s) 25, 118, 686, 1109, 1134
NlaIV GGNNCC 1 cut(s) 915
NmuCI GTSAC 1 cut(s) 1040
PagI TCATGA 3 cut(s) 21, 682, 1105
PceI AGGCCT 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 732, 1014
PfeI GAWTC 1 cut(s) 878
PkrI GCNGC 7 cut(s) 439, 741, 744, 900, 996, 999, 1002
PleI GAGTC 4 cut(s) 19, 489, 789, 1089
PpsI GAGTC 4 cut(s) 19, 489, 789, 1089
Psp124BI GAGCTC 1 cut(s) 1126
Psp1406I AACGTT 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 127, 254
PspFI CCCAGC 1 cut(s) 1117
PspGI CCWGG 2 cut(s) 127, 254
PspN4I GGNNCC 1 cut(s) 915
PspPI GGNCC 2 cut(s) 258, 940
PstI CTGCAG 1 cut(s) 744
PsuI RGATCY 2 cut(s) 478, 747
PvuII CAGCTG 1 cut(s) 1117
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 687
SacI GAGCTC 1 cut(s) 1126
SaqAI TTAA 1 cut(s) 1089
SatI GCNGC 7 cut(s) 438, 740, 743, 899, 995, 998, 1001
Sau96I GGNCC 2 cut(s) 258, 940
SchI GAGTC 4 cut(s) 19, 489, 790, 1089
ScrFI CCNGG 2 cut(s) 129, 256
SduI GDGCHC 2 cut(s) 275, 1126
SfaNI GCATC 2 cut(s) 439, 805
SfcI CTRYAG 1 cut(s) 740
SinI GGWCC 1 cut(s) 940
SmiMI CAYNNNNRTG 1 cut(s) 687
Sse9I AATT 8 cut(s) 17, 156, 215, 500, 663, 721, 908, 1085
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 1 cut(s) 899
SspI AATATT 1 cut(s) 1051
SspMI CTAG 1 cut(s) 627
SstI GAGCTC 1 cut(s) 1126
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 127, 254
StyI CCWWGG 3 cut(s) 114, 188, 1130
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 4 cut(s) 62, 323, 425, 1042
TaqI TCGA 1 cut(s) 1059
TasI AATT 8 cut(s) 17, 156, 215, 500, 663, 721, 908, 1085
TatI WGTACW 1 cut(s) 456
TauI GCSGC 1 cut(s) 901
TfiI GAWTC 1 cut(s) 878
Tru1I TTAA 1 cut(s) 1089
Tru9I TTAA 1 cut(s) 1089
TscAI CASTG 3 cut(s) 364, 637, 859
TseFI GTSAC 1 cut(s) 1040
TseI GCWGC 6 cut(s) 437, 739, 742, 994, 997, 1000
Tsp45I GTSAC 1 cut(s) 1040
TspDTI ATGAA 5 cut(s) 10, 417, 699, 1098, 1122
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 3 cut(s) 364, 637, 859
VpaK11BI GGWCC 1 cut(s) 940
XapI RAATTY 3 cut(s) 156, 500, 1085
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.