Rorug05G0574900
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000636
Physical Location & Seq
Reverse (-)
77052753 .. 77053561
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0574900.1

Sequence Viewer

Length: 597 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTACGTCAAGGGATTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGCCTCCAGCTGAACCAGTATGGACATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAAACAGGCTGCTCCAGTGCCCATGGAAACTAGTTCTCTTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTAAATCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

198

Amino Acids

21.56

Weight (kDa)

5.67

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 1.6e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 465
AccIII TCCGGA 1 cut(s) 581
AciI CCGC 1 cut(s) 531
AclI AACGTT 1 cut(s) 552
AclWI GGATC 3 cut(s) 141, 330, 343
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 2 cut(s) 91, 328
AfeI AGCGCT 1 cut(s) 502
AfiI CCNNNNNNNGG 1 cut(s) 452
AflIII ACRYGT 1 cut(s) 214
AgsI TTSAA 1 cut(s) 428
AhlI ACTAGT 1 cut(s) 314
AjnI CCWGG 2 cut(s) 92, 417
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 565, 587
AluI AGCT 4 cut(s) 53, 199, 565, 587
Alw21I GWGCWC 3 cut(s) 177, 453, 567
Alw44I GTGCAC 1 cut(s) 449
AlwI GGATC 3 cut(s) 141, 330, 343
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 581
Aor51HI AGCGCT 1 cut(s) 502
ApaLI GTGCAC 1 cut(s) 449
ApeKI GCWGC 3 cut(s) 50, 293, 587
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 1 cut(s) 357
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 357
BaeGI GKGCMC 3 cut(s) 164, 306, 453
BamHI GGATCC 1 cut(s) 335
BanII GRGCYC 2 cut(s) 262, 567
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 3 cut(s) 177, 453, 567
BbvI GCAGC 3 cut(s) 62, 280, 574
BccI CCATC 1 cut(s) 586
BceAI ACGGC 2 cut(s) 72, 469
BciT130I CCWGG 2 cut(s) 94, 419
BcuI ACTAGT 1 cut(s) 314
BfaI CTAG 2 cut(s) 315, 595
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 504
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 588
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 3 cut(s) 52, 295, 589
Bme1390I CCNGG 2 cut(s) 94, 419
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 357
BmiI GGNNCC 4 cut(s) 6, 245, 337, 358
BmrFI CCNGG 2 cut(s) 94, 419
BpmI CTGGAG 4 cut(s) 93, 179, 282, 399
Bpu10I CCTNAGC 1 cut(s) 526
Bpu1102I GCTNAGC 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 113, 581
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 306, 489
BsaWI WCCGGW 1 cut(s) 581
Bsc4I CCNNNNNNNGG 1 cut(s) 452
Bse1I ACTGG 5 cut(s) 205, 299, 334, 367, 376
BseAI TCCGGA 1 cut(s) 581
BseBI CCWGG 2 cut(s) 94, 419
BseDI CCNNGG 2 cut(s) 306, 489
BseGI GGATG 2 cut(s) 389, 578
BseLI CCNNNNNNNGG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 540, 580
BseNI ACTGG 5 cut(s) 205, 299, 334, 367, 376
BseRI GAGGAG 3 cut(s) 44, 420, 423
BseSI GKGCMC 3 cut(s) 164, 306, 453
BseXI GCAGC 3 cut(s) 62, 280, 574
BsiHKAI GWGCWC 3 cut(s) 177, 453, 567
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 582
BslI CCNNNNNNNGG 1 cut(s) 452
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
Bsp13I TCCGGA 1 cut(s) 581
Bsp143I GATC 5 cut(s) 133, 186, 335, 343, 412
Bsp1720I GCTNAGC 1 cut(s) 566
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 1 cut(s) 531
BspCNI CTCAG 2 cut(s) 539, 579
BspEI TCCGGA 1 cut(s) 581
BspLI GGNNCC 4 cut(s) 6, 245, 337, 358
BspPI GGATC 3 cut(s) 141, 330, 343
BsrI ACTGG 5 cut(s) 205, 299, 334, 367, 376
BssECI CCNNGG 2 cut(s) 306, 489
BssMI GATC 5 cut(s) 133, 186, 335, 343, 412
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 419
Bst4CI ACNGT 1 cut(s) 542
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 462
BstDEI CTNAG 2 cut(s) 526, 566
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 2 cut(s) 470, 533
BstF5I GGATG 2 cut(s) 389, 578
BstH2I RGCGCY 1 cut(s) 504
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 5 cut(s) 136, 189, 338, 346, 415
BstMBI GATC 5 cut(s) 133, 186, 335, 343, 412
BstNI CCWGG 2 cut(s) 94, 419
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 2 cut(s) 470, 533
BstSCI CCNGG 2 cut(s) 92, 417
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 453
BstV1I GCAGC 3 cut(s) 62, 280, 574
BstX2I RGATCY 3 cut(s) 133, 186, 335
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 3 cut(s) 133, 186, 335
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 389, 578
BtsIMutI CAGTG 3 cut(s) 306, 360, 547
CfoI GCGC 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 357
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 2 cut(s) 90, 327
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 2 cut(s) 90, 327
DdeI CTNAG 2 cut(s) 526, 566
DpnI GATC 5 cut(s) 135, 188, 337, 345, 414
DpnII GATC 5 cut(s) 133, 186, 335, 343, 412
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Ecl136II GAGCTC 1 cut(s) 565
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 2 cut(s) 262, 567
Eco47I GGWCC 1 cut(s) 357
Eco47III AGCGCT 1 cut(s) 502
Eco53kI GAGCTC 1 cut(s) 565
Eco57I CTGAAG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 470, 533
EcoICRI GAGCTC 1 cut(s) 565
EcoO65I GGTNACC 2 cut(s) 470, 533
EcoRII CCWGG 2 cut(s) 92, 417
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 2 cut(s) 262, 567
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 4 cut(s) 71, 210, 216, 308
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 588
FokI GGATG 2 cut(s) 376, 565
FriOI GRGCYC 2 cut(s) 262, 567
Fsp4HI GCNGC 3 cut(s) 51, 294, 588
FspBI CTAG 2 cut(s) 315, 595
GlaI GCGC 1 cut(s) 502
GluI GCNGC 3 cut(s) 51, 294, 588
GsuI CTGGAG 4 cut(s) 93, 179, 282, 399
HaeII RGCGCY 1 cut(s) 504
HapII CCGG 1 cut(s) 582
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 3 cut(s) 73, 218, 310
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HinfI GANTC 2 cut(s) 100, 123
HpaII CCGG 1 cut(s) 582
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 3 cut(s) 287, 360, 451
Hpy188I TCNGA 1 cut(s) 490
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 560, 582
Hpy8I GTNNAC 3 cut(s) 287, 360, 451
HpyAV CCTTC 2 cut(s) 472, 488
HpyCH4III ACNGT 1 cut(s) 542
HpyCH4IV ACGT 4 cut(s) 144, 252, 462, 552
HpyCH4V TGCA 2 cut(s) 397, 451
HpyF3I CTNAG 2 cut(s) 526, 566
HpySE526I ACGT 4 cut(s) 144, 252, 462, 552
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 3 cut(s) 73, 218, 310
HspAI GCGC 1 cut(s) 501
Kpn2I TCCGGA 1 cut(s) 581
Kzo9I GATC 5 cut(s) 133, 186, 335, 343, 412
LmnI GCTCC 2 cut(s) 301, 584
Lsp1109I GCAGC 3 cut(s) 62, 280, 574
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 2 cut(s) 315, 595
MaeII ACGT 4 cut(s) 144, 252, 462, 552
MaeIII GTNAC 3 cut(s) 470, 509, 533
MalI GATC 5 cut(s) 135, 188, 337, 345, 414
MboI GATC 5 cut(s) 133, 186, 335, 343, 412
MboII GAAGA 1 cut(s) 425
MflI RGATCY 3 cut(s) 133, 186, 335
MhlI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
MluCI AATT 1 cut(s) 349
MroI TCCGGA 1 cut(s) 581
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 2 cut(s) 94, 419
MvaI CCWGG 2 cut(s) 94, 419
NcoI CCATGG 1 cut(s) 306
NdeII GATC 5 cut(s) 133, 186, 335, 343, 412
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 4 cut(s) 6, 245, 337, 358
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PciI ACATGT 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 459
PfeI GAWTC 2 cut(s) 100, 123
PkrI GCNGC 3 cut(s) 52, 295, 589
PscI ACATGT 1 cut(s) 214
Psp124BI GAGCTC 1 cut(s) 567
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 92, 417
PspEI GGTNACC 2 cut(s) 470, 533
PspGI CCWGG 2 cut(s) 92, 417
PspN4I GGNNCC 4 cut(s) 6, 245, 337, 358
PspPI GGNCC 1 cut(s) 357
PsuI RGATCY 3 cut(s) 133, 186, 335
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 2 cut(s) 91, 328
RsaNI GTAC 2 cut(s) 90, 327
SacI GAGCTC 1 cut(s) 567
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 588
Sau3AI GATC 5 cut(s) 133, 186, 335, 343, 412
Sau96I GGNCC 1 cut(s) 357
ScrFI CCNGG 2 cut(s) 94, 419
SduI GDGCHC 6 cut(s) 164, 177, 262, 306, 453, 567
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 357
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 560
SmoI CTYRAG 3 cut(s) 128, 261, 560
SpeI ACTAGT 1 cut(s) 314
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 531
SspMI CTAG 2 cut(s) 315, 595
SstI GAGCTC 1 cut(s) 567
StyD4I CCNGG 2 cut(s) 92, 417
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 542
TaiI ACGT 4 cut(s) 147, 255, 465, 555
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 349
TfiI GAWTC 2 cut(s) 100, 123
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 3 cut(s) 306, 367, 547
TseI GCWGC 3 cut(s) 50, 293, 587
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 3 cut(s) 306, 367, 547
VneI GTGCAC 1 cut(s) 449
VpaK11BI GGWCC 1 cut(s) 357
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XspI CTAG 2 cut(s) 315, 595
ZraI GACGTC 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.