Rmu_sc0001371.1_g000021
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001371.1
OG0000636
Physical Location & Seq
Reverse (-)
114848 .. 115918
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001371.1_g000021.1.cds

Sequence Viewer

Length: 1071 bp
atggcttcttcttcaatttcttttctcatgcgccttgaagaccttgatgtcggtgttgtgaagacgttccaccccactaattctgatttagtgggaagctatctctacaacagaatcaaatccccaaccccaattggaggaaaacaaacattccctgagattaaaatatatggcaccacaggtttacccccgtgggatatctggagaatttatgagccttgcaaatttccacatcaagattatatctatttcttctccccggtcaagaagttgggttcccgctgttgtcgcagaattggctccgatggaggcacctggagcgagactgaatctgctaaacctgtctatgtcagtggaattgaagagccttatgggaaactaaggaaatttagatacgaaaacaacagagacaaaggctgtgaacaccatgctgcttggttgatggatgaattcaccatcaaccaagcacccgatttggctttgtgccggctcaaagtcaatgacaaaggaggaggaagaaaaaagaggaagaagagttctgatgagactaatgaggatgagaatcacagaaagacaatgtctttcaaaaaccgaaaacttgaaccgaaaagagtacttcaagttcaaaacaacatgtgtgagcaacaaaagggaagtgcctcatttagtactactagcactacacagcaactgcccccacaatgtgatgatcatggttactgtatggatgagaacctacttttctctccaaccggcttggttgatgattatgatgacattttgaatagtgatcagtttatggcttctcttgatcaatggtatgaggaacaacaacagttttcggattcttcactactagtgccgcagcaagaagtagaacctaacaacagttgtgtggaacaacaacagcaacaagatgagcagcagctctgtggtggttttgatctgatggttcatggttatcaggaccttgatattgcattcgatactccctacttacagtctgaggaatttaatggatttgatcaagatcagcctaaagcactgtatcagtattctgacgttttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

356

Amino Acids

40.92

Weight (kDa)

4.93

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
AccB1I GGYRCC 2 cut(s) 173, 311
AciI CCGC 2 cut(s) 280, 863
AcsI RAATTY 5 cut(s) 207, 224, 386, 449, 1010
AdeI CACNNNGTG 1 cut(s) 704
AfaI GTAC 2 cut(s) 615, 670
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 8 cut(s) 15, 38, 362, 586, 602, 620, 626, 784
AhlI ACTAGT 1 cut(s) 856
AjnI CCWGG 1 cut(s) 314
AloI GAACNNNNNNTCC 2 cut(s) 520, 552
AluBI AGCT 2 cut(s) 99, 928
AluI AGCT 2 cut(s) 99, 928
Alw26I GTCTC 3 cut(s) 317, 402, 539
AlwNI CAGNNNCTG 1 cut(s) 691
ApeKI GCWGC 4 cut(s) 431, 865, 922, 925
ApoI RAATTY 5 cut(s) 207, 224, 386, 449, 1010
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 1 cut(s) 967
AsuC2I CCSGG 1 cut(s) 260
AsuHPI GGTGA 1 cut(s) 445
AvaII GGWCC 1 cut(s) 967
BanI GGYRCC 2 cut(s) 173, 311
BbsI GAAGAC 2 cut(s) 45, 68
BbvI GCAGC 4 cut(s) 418, 877, 934, 937
BccI CCATC 4 cut(s) 299, 436, 464, 943
BciT130I CCWGG 1 cut(s) 316
BclI TGATCA 4 cut(s) 709, 790, 811, 1024
BcnI CCSGG 1 cut(s) 260
BcoDI GTCTC 3 cut(s) 317, 402, 539
BcuI ACTAGT 1 cut(s) 856
BfaI CTAG 2 cut(s) 675, 857
BisI GCNGC 5 cut(s) 432, 863, 866, 923, 926
BlsI GCNGC 5 cut(s) 433, 864, 867, 924, 927
BmcAI AGTACT 2 cut(s) 615, 670
Bme1390I CCNGG 2 cut(s) 260, 316
Bme18I GGWCC 1 cut(s) 967
BmgT120I GGNCC 1 cut(s) 967
BmiI GGNNCC 4 cut(s) 175, 277, 301, 313
BmrFI CCNGG 2 cut(s) 260, 316
BpiI GAAGAC 2 cut(s) 45, 68
BpmI CTGGAG 2 cut(s) 223, 337
BpuMI CCSGG 1 cut(s) 260
BsaBI GATNNNNATC 2 cut(s) 561, 1029
BsaJI CCNNGG 2 cut(s) 191, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse118I RCCGGY 2 cut(s) 486, 752
Bse8I GATNNNNATC 2 cut(s) 561, 1029
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 2 cut(s) 191, 258
BseGI GGATG 3 cut(s) 451, 562, 733
BseJI GATNNNNATC 2 cut(s) 561, 1029
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 2 cut(s) 147, 996
BseRI GAGGAG 1 cut(s) 525
BseXI GCAGC 4 cut(s) 418, 877, 934, 937
BshNI GGYRCC 2 cut(s) 173, 311
BsiSI CCGG 3 cut(s) 260, 487, 753
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 3 cut(s) 317, 402, 539
BsmI GAATGC 1 cut(s) 980
Bsp143I GATC 6 cut(s) 709, 790, 811, 943, 1024, 1030
BspACI CCGC 2 cut(s) 280, 863
BspCNI CTCAG 2 cut(s) 148, 997
BspLI GGNNCC 4 cut(s) 175, 277, 301, 313
BspQI GCTCTTC 1 cut(s) 357
BspT107I GGYRCC 2 cut(s) 173, 311
BsrFI RCCGGY 2 cut(s) 486, 752
BssAI RCCGGY 2 cut(s) 486, 752
BssECI CCNNGG 2 cut(s) 191, 258
BssMI GATC 6 cut(s) 709, 790, 811, 943, 1024, 1030
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 5 cut(s) 722, 837, 890, 1002, 1047
Bst6I CTCTTC 2 cut(s) 357, 527
BstC8I GCNNGC 1 cut(s) 488
BstDEI CTNAG 3 cut(s) 156, 380, 1005
BstDSI CCRYGG 1 cut(s) 191
BstF5I GGATG 3 cut(s) 451, 562, 733
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 6 cut(s) 712, 793, 814, 946, 1027, 1033
BstMAI GTCTC 3 cut(s) 317, 402, 539
BstMBI GATC 6 cut(s) 709, 790, 811, 943, 1024, 1030
BstMWI GCNNNNNNNGC 3 cut(s) 288, 297, 318
BstNI CCWGG 1 cut(s) 316
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 2 cut(s) 258, 314
BstV1I GCAGC 4 cut(s) 418, 877, 934, 937
BstV2I GAAGAC 2 cut(s) 45, 68
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 3 cut(s) 451, 562, 733
BtsIMutI CAGTG 2 cut(s) 358, 1043
Cac8I GCNNGC 1 cut(s) 488
CaiI CAGNNNCTG 1 cut(s) 691
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 2 cut(s) 486, 752
Cfr13I GGNCC 1 cut(s) 967
Csp6I GTAC 2 cut(s) 614, 669
CviAII CATG 5 cut(s) 28, 428, 634, 713, 956
CviQI GTAC 2 cut(s) 614, 669
DdeI CTNAG 3 cut(s) 156, 380, 1005
DpnI GATC 6 cut(s) 711, 792, 813, 945, 1026, 1032
DpnII GATC 6 cut(s) 709, 790, 811, 943, 1024, 1030
DraIII CACNNNGTG 1 cut(s) 704
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
Eam1104I CTCTTC 2 cut(s) 357, 527
EarI CTCTTC 2 cut(s) 357, 527
Eco32I GATATC 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 967
EcoO109I RGGNCCY 1 cut(s) 967
EcoRI GAATTC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 314
EcoRV GATATC 1 cut(s) 199
FaeI CATG 5 cut(s) 31, 431, 637, 716, 959
FatI CATG 5 cut(s) 27, 427, 633, 712, 955
FauI CCCGC 1 cut(s) 287
FbaI TGATCA 4 cut(s) 709, 790, 811, 1024
Fnu4HI GCNGC 5 cut(s) 432, 863, 866, 923, 926
FokI GGATG 3 cut(s) 458, 569, 740
Fsp4HI GCNGC 5 cut(s) 432, 863, 866, 923, 926
FspBI CTAG 2 cut(s) 675, 857
GlaI GCGC 1 cut(s) 32
GluI GCNGC 5 cut(s) 432, 863, 866, 923, 926
GsuI CTGGAG 2 cut(s) 223, 337
HapII CCGG 3 cut(s) 260, 487, 753
HhaI GCGC 1 cut(s) 33
Hin1II CATG 5 cut(s) 31, 431, 637, 716, 959
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 4 cut(s) 114, 329, 562, 845
HpaII CCGG 3 cut(s) 260, 487, 753
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 185, 422
Hpy188I TCNGA 7 cut(s) 85, 304, 541, 844, 948, 1006, 1060
Hpy188III TCNNGA 6 cut(s) 202, 236, 265, 809, 965, 1028
Hpy8I GTNNAC 2 cut(s) 185, 422
HpyCH4III ACNGT 5 cut(s) 722, 837, 890, 1002, 1047
HpyCH4IV ACGT 2 cut(s) 65, 1062
HpyCH4V TGCA 2 cut(s) 222, 980
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 297, 318
HpyF3I CTNAG 3 cut(s) 156, 380, 1005
HpySE526I ACGT 2 cut(s) 65, 1062
Hsp92II CATG 5 cut(s) 31, 431, 637, 716, 959
HspAI GCGC 1 cut(s) 31
KroI GCCGGC 1 cut(s) 486
KroNI GCCGGC 1 cut(s) 488
Ksp22I TGATCA 4 cut(s) 709, 790, 811, 1024
Kzo9I GATC 6 cut(s) 709, 790, 811, 943, 1024, 1030
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 2 cut(s) 305, 318
Lsp1109I GCAGC 4 cut(s) 418, 877, 934, 937
MaeI CTAG 2 cut(s) 675, 857
MaeII ACGT 2 cut(s) 65, 1062
MaeIII GTNAC 1 cut(s) 716
MalI GATC 6 cut(s) 711, 792, 813, 945, 1026, 1032
MboI GATC 6 cut(s) 709, 790, 811, 943, 1024, 1030
MboII GAAGA 9 cut(s) 3, 50, 73, 244, 374, 528, 541, 544, 840
MfeI CAATTG 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 773
MnlI CCTC 9 cut(s) 131, 302, 503, 506, 519, 547, 670, 817, 1000
MroNI GCCGGC 1 cut(s) 486
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 2 cut(s) 162, 1014
MspA1I CMGCKG 1 cut(s) 282
MspI CCGG 3 cut(s) 260, 487, 753
MspR9I CCNGG 2 cut(s) 260, 316
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 980
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 288, 297, 318
NaeI GCCGGC 1 cut(s) 488
NciI CCSGG 1 cut(s) 260
NdeII GATC 6 cut(s) 709, 790, 811, 943, 1024, 1030
NgoMIV GCCGGC 1 cut(s) 486
NlaIII CATG 5 cut(s) 31, 431, 637, 716, 959
NlaIV GGNNCC 4 cut(s) 175, 277, 301, 313
NspI RCATGY 1 cut(s) 637
PciI ACATGT 1 cut(s) 633
PciSI GCTCTTC 1 cut(s) 357
PctI GAATGC 1 cut(s) 980
PdiI GCCGGC 1 cut(s) 488
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 4 cut(s) 114, 329, 562, 845
PflFI GACNNNGTC 1 cut(s) 577
PkrI GCNGC 5 cut(s) 433, 864, 867, 924, 927
PpuMI RGGWCCY 1 cut(s) 967
PscI ACATGT 1 cut(s) 633
Psp5II RGGWCCY 1 cut(s) 967
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspN4I GGNNCC 4 cut(s) 175, 277, 301, 313
PspPI GGNCC 1 cut(s) 967
PspPPI RGGWCCY 1 cut(s) 967
PsrI GAACNNNNNNTAC 2 cut(s) 606, 638
PstNI CAGNNNCTG 1 cut(s) 691
PsyI GACNNNGTC 1 cut(s) 577
RsaI GTAC 2 cut(s) 615, 670
RsaNI GTAC 2 cut(s) 614, 669
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 2 cut(s) 162, 1014
SatI GCNGC 5 cut(s) 432, 863, 866, 923, 926
Sau3AI GATC 6 cut(s) 709, 790, 811, 943, 1024, 1030
Sau96I GGNCC 1 cut(s) 967
ScaI AGTACT 2 cut(s) 615, 670
ScrFI CCNGG 2 cut(s) 260, 316
SinI GGWCC 1 cut(s) 967
SpeI ACTAGT 1 cut(s) 856
SsiI CCGC 2 cut(s) 280, 863
SspMI CTAG 2 cut(s) 675, 857
StyD4I CCNGG 2 cut(s) 258, 314
TaaI ACNGT 5 cut(s) 722, 837, 890, 1002, 1047
TaiI ACGT 2 cut(s) 68, 1065
TaqI TCGA 1 cut(s) 984
TatI WGTACW 2 cut(s) 613, 668
TauI GCSGC 1 cut(s) 865
TfiI GAWTC 4 cut(s) 114, 329, 562, 845
Tru1I TTAA 2 cut(s) 162, 1014
Tru9I TTAA 2 cut(s) 162, 1014
TscAI CASTG 2 cut(s) 358, 1050
TseI GCWGC 4 cut(s) 431, 865, 922, 925
TspDTI ATGAA 2 cut(s) 462, 944
TspRI CASTG 2 cut(s) 358, 1050
Tth111I GACNNNGTC 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 967
XapI RAATTY 5 cut(s) 207, 224, 386, 449, 1010
XceI RCATGY 1 cut(s) 637
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 2 cut(s) 675, 857
ZrmI AGTACT 2 cut(s) 615, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.