Rorug05G0218800

No description available

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
22506255 .. 22506653
399 bp
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UTR
Exon/CDS
Intron
Rorug05G0218800.1

Sequence Viewer

Length: 399 bp
ATGCATTCAGCAAAGCTTGCTCAAAACTCATTACCTGTCAAACCGTCAGATGGTCAGAGTGATTCAGTTGTTAATGTTGGAGAATCTACATCTTCAACCAATGTTCCTTCGCATGCCACGGATATGGATGTGAGTGTACCATTTGCATTGGTTGATGAGATAGCTGATGCATCACCAGCAACGGAGGGTGGCATACAACTTGGAGATCAGATTGTGAAATTTGGCAATGTGGAAAATGGTGACAATTTGTTGCGGAAACTTGCTTCCGAGGCTCAAACAAATCTGGGTTGTGCTGTGCCTGTTATGGTCTTAAGGCAAGGTGCCCAATTCAACTTAATGGTGACACCTAGAACATGGCAAGGCAGAGGTCTATTGGGGTGTCATTTCCAAATTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.92

Weight (kDa)

4.92

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000636)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AciI CCGC 1 cut(s) 253
AcsI RAATTY 2 cut(s) 218, 390
AfaI GTAC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 50
AflII CTTAAG 1 cut(s) 310
AgsI TTSAA 2 cut(s) 96, 331
AluBI AGCT 2 cut(s) 16, 164
AluI AGCT 2 cut(s) 16, 164
ApoI RAATTY 2 cut(s) 218, 390
AsuHPI GGTGA 3 cut(s) 165, 251, 352
BaeGI GKGCMC 1 cut(s) 325
BanI GGYRCC 1 cut(s) 320
BccI CCATC 1 cut(s) 44
BfaI CTAG 1 cut(s) 348
BfrI CTTAAG 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 322
BmsI GCATC 2 cut(s) 157, 179
BsaJI CCNNGG 2 cut(s) 117, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 117, 267
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 50
BseMI GCAATG 1 cut(s) 232
BseSI GKGCMC 1 cut(s) 325
BshNI GGYRCC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 50
BsmI GAATGC 1 cut(s) 4
Bsp1286I GDGCHC 1 cut(s) 325
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 322
BspT107I GGYRCC 1 cut(s) 320
BspTI CTTAAG 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 117, 267
BssMI GATC 1 cut(s) 205
Bst4CI ACNGT 1 cut(s) 45
BstAFI CTTAAG 1 cut(s) 310
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 2 cut(s) 18, 114
BstDSI CCRYGG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 3 cut(s) 17, 176, 269
BstNSI RCATGY 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 325
BstXI CCANNNNNNTGG 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 117
BtsCI GGATG 1 cut(s) 133
Cac8I GCNNGC 2 cut(s) 18, 114
Csp6I GTAC 1 cut(s) 137
CviAII CATG 2 cut(s) 113, 354
CviJI RGCY 3 cut(s) 16, 164, 272
CviKI_1 RGCY 3 cut(s) 16, 164, 272
CviQI GTAC 1 cut(s) 137
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
EcoT22I ATGCAT 2 cut(s) 6, 172
FaeI CATG 2 cut(s) 116, 357
FaiI YATR 5 cut(s) 114, 125, 194, 305, 355
FatI CATG 2 cut(s) 112, 353
FokI GGATG 1 cut(s) 140
FspBI CTAG 1 cut(s) 348
Hin1II CATG 2 cut(s) 116, 357
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 2 cut(s) 62, 83
HphI GGTGA 3 cut(s) 165, 251, 352
Hpy166II GTNNAC 1 cut(s) 137
Hpy188I TCNGA 4 cut(s) 49, 57, 210, 268
Hpy8I GTNNAC 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 3 cut(s) 4, 146, 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 176, 269
Hsp92II CATG 2 cut(s) 116, 357
Kzo9I GATC 1 cut(s) 205
LpnPI CCDG 4 cut(s) 48, 189, 269, 312
LweI GCATC 2 cut(s) 157, 179
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 239, 340
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 84
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 4 cut(s) 218, 244, 326, 390
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 3 cut(s) 178, 262, 359
Mph1103I ATGCAT 2 cut(s) 6, 172
MseI TTAA 3 cut(s) 72, 311, 335
MslI CAYNNNNRTG 1 cut(s) 122
MspCI CTTAAG 1 cut(s) 310
Mva1269I GAATGC 1 cut(s) 4
MwoI GCNNNNNNNGC 3 cut(s) 17, 176, 269
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 116, 357
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 2 cut(s) 239, 340
NsiI ATGCAT 2 cut(s) 6, 172
NspI RCATGY 1 cut(s) 116
PaeI GCATGC 1 cut(s) 116
PctI GAATGC 1 cut(s) 4
PfeI GAWTC 2 cut(s) 62, 83
PspN4I GGNNCC 1 cut(s) 322
RsaI GTAC 1 cut(s) 138
RsaNI GTAC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 3 cut(s) 72, 311, 335
Sau3AI GATC 1 cut(s) 205
SduI GDGCHC 1 cut(s) 325
SetI ASST 6 cut(s) 18, 37, 166, 322, 349, 370
SfaNI GCATC 2 cut(s) 157, 179
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 310
SmoI CTYRAG 1 cut(s) 310
SphI GCATGC 1 cut(s) 116
Sse9I AATT 4 cut(s) 218, 244, 326, 390
SsiI CCGC 1 cut(s) 253
SspMI CTAG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 45
TasI AATT 4 cut(s) 218, 244, 326, 390
TfiI GAWTC 2 cut(s) 62, 83
Tru1I TTAA 3 cut(s) 72, 311, 335
Tru9I TTAA 3 cut(s) 72, 311, 335
TseFI GTSAC 2 cut(s) 239, 340
Tsp45I GTSAC 2 cut(s) 239, 340
TspGWI ACGGA 2 cut(s) 134, 197
Vha464I CTTAAG 1 cut(s) 310
XapI RAATTY 2 cut(s) 218, 390
XceI RCATGY 1 cut(s) 116
XspI CTAG 1 cut(s) 348
Zsp2I ATGCAT 2 cut(s) 6, 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.