Rmu_sc0004062.1_g000013
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004062.1
OG0000636
Physical Location & Seq
Reverse (-)
63259 .. 64458
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004062.1_g000013.1.cds

Sequence Viewer

Length: 1200 bp
atggctctggtagatcaattcatgactctggatcaacttgatgtgggtgtggtgaagacgtttcaccctactgaagctgagttggtgggtttctttctatacaacaagatttccatggcctcaaacccaggcaatcatattcagaccttccctgaaatttgtatatacggcgagacaggcttaccaccttgggagatatggagggtatatcagcaattcaagtttccccaccaagattttctctacttctactcctgggccaagaaagtgagccccaacaaatctcgcaactctcgcacggttggctctgatggaggaacgtggagcgagacggaagccggtaggtctgtgtatatcagtggaagtgaagaggcgtttgggaaagtcaggaagtttcggtatgaaaagaacaaggacaaaacgtttgtgcatcacgctgcttggttgatggaggagtacaccatcaaccaagcaccagatctggctttgtgccgactcaaagtcaatgataaaggaggaggaagaaaaaagaggaagaagagttttgatgagacgaatgaggatcagaatgtgagaagcaaaaagtgtttgaaaaaccgaaaagttgaaccgagaagagatcaaactagtttcttggatcctgaggagcaacaagaaggcagtgcttcctttgctactactacttcacagctaattctctctccctatcatcatgaagatgatcaagcggttcaggtggttccggagaacaattacgattatgacgagctgcagcagatcctctttagtgatgatgattgtatggatgagaatctaatgttctctcccactatcttgtttgatgatgctcagcttatggcttctgttgaccaatcaatagctagtgagcaacaacaacaagaagattcggattattcacttgcgccgcaacagcaattggaacctgacaataggtgtcaagaggaggaccaagtacaacaacaagaagatcagccctcttcctctcattctcatgagcagcagcagctcatcggtgatggcgatctgatgatttatggccaacatgactataatattccactcgataacgacttcttatggtcagatgaatttaatggactcttgactcatgaagatcagctgggagctgtgccatggcgggatagtgatgatcagtttcagtattctgacatcttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

399

Amino Acids

46.13

Weight (kDa)

4.54

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 742
AciI CCGC 3 cut(s) 728, 926, 1159
AclI AACGTT 1 cut(s) 422
AclWI GGATC 5 cut(s) 39, 570, 632, 645, 772
AcoI YGGCCR 1 cut(s) 1057
AcsI RAATTY 2 cut(s) 156, 1109
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 458, 975
AgsI TTSAA 3 cut(s) 220, 592, 608
AhdI GACNNNNNGTC 1 cut(s) 500
AhlI ACTAGT 1 cut(s) 626
AjnI CCWGG 2 cut(s) 127, 254
AjuI GAANNNNNNNTTGG 2 cut(s) 360, 392
AluBI AGCT 8 cut(s) 77, 691, 769, 853, 881, 1027, 1141, 1148
AluI AGCT 8 cut(s) 77, 691, 769, 853, 881, 1027, 1141, 1148
Alw26I GTCTC 3 cut(s) 167, 323, 545
AlwI GGATC 5 cut(s) 39, 570, 632, 645, 772
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 3 cut(s) 117, 258, 1057
ApeKI GCWGC 6 cut(s) 437, 769, 772, 1018, 1021, 1024
ApoI RAATTY 2 cut(s) 156, 1109
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
AspLEI GCGC 1 cut(s) 925
AspS9I GGNCC 2 cut(s) 258, 967
AsuHPI GGTGA 3 cut(s) 56, 64, 1046
AvaII GGWCC 1 cut(s) 967
AxyI CCTNAGG 1 cut(s) 642
BalI TGGCCA 1 cut(s) 1059
BamHI GGATCC 1 cut(s) 637
BanII GRGCYC 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 62
BbvI GCAGC 6 cut(s) 424, 756, 784, 1030, 1033, 1036
BccI CCATC 4 cut(s) 305, 442, 470, 1031
BceAI ACGGC 1 cut(s) 184
BciT130I CCWGG 2 cut(s) 129, 256
BclI TGATCA 2 cut(s) 721, 1171
BcoDI GTCTC 3 cut(s) 167, 323, 545
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 2 cut(s) 627, 882
BfmI CTRYAG 1 cut(s) 770
BglII AGATCT 1 cut(s) 478
BisI GCNGC 7 cut(s) 438, 770, 773, 926, 1019, 1022, 1025
BlpI GCTNAGC 1 cut(s) 849
BlsI GCNGC 7 cut(s) 439, 771, 774, 927, 1020, 1023, 1026
Bme1390I CCNGG 2 cut(s) 129, 256
Bme18I GGWCC 1 cut(s) 967
BmeRI GACNNNNNGTC 1 cut(s) 500
BmgT120I GGNCC 2 cut(s) 258, 967
BmiI GGNNCC 3 cut(s) 639, 741, 942
BmrFI CCNGG 2 cut(s) 129, 256
BmsI GCATC 2 cut(s) 439, 835
BpiI GAAGAC 1 cut(s) 62
Bpu1102I GCTNAGC 1 cut(s) 849
BsaBI GATNNNNATC 2 cut(s) 810, 1041
BsaJI CCNNGG 5 cut(s) 114, 127, 188, 255, 1154
BsaWI WCCGGW 1 cut(s) 742
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse118I RCCGGY 1 cut(s) 338
Bse21I CCTNAGG 1 cut(s) 642
Bse8I GATNNNNATC 2 cut(s) 810, 1041
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 2 cut(s) 129, 256
BseDI CCNNGG 5 cut(s) 114, 127, 188, 255, 1154
BseGI GGATG 1 cut(s) 811
BseJI GATNNNNATC 2 cut(s) 810, 1041
BseMII CTCAG 3 cut(s) 69, 633, 863
BseRI GAGGAG 4 cut(s) 467, 531, 659, 977
BseXI GCAGC 6 cut(s) 424, 756, 784, 1030, 1033, 1036
BseYI CCCAGC 1 cut(s) 1141
BshFI GGCC 3 cut(s) 119, 260, 1059
BsiSI CCGG 2 cut(s) 339, 743
BsmAI GTCTC 3 cut(s) 167, 323, 545
BsmBI CGTCTC 2 cut(s) 323, 545
BsnI GGCC 3 cut(s) 119, 260, 1059
Bsp1286I GDGCHC 1 cut(s) 275
Bsp13I TCCGGA 1 cut(s) 742
Bsp1720I GCTNAGC 1 cut(s) 849
Bsp19I CCATGG 2 cut(s) 114, 1154
BspACI CCGC 3 cut(s) 728, 926, 1159
BspANI GGCC 3 cut(s) 119, 260, 1059
BspCNI CTCAG 3 cut(s) 70, 634, 862
BspEI TCCGGA 1 cut(s) 742
BspHI TCATGA 4 cut(s) 21, 712, 1012, 1129
BspLI GGNNCC 3 cut(s) 639, 741, 942
BspMAI CTGCAG 1 cut(s) 774
BspPI GGATC 5 cut(s) 39, 570, 632, 645, 772
BsrFI RCCGGY 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 5 cut(s) 114, 127, 188, 255, 1154
BssT1I CCWWGG 3 cut(s) 114, 188, 1154
Bst2UI CCWGG 2 cut(s) 129, 256
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 4 cut(s) 363, 533, 610, 1003
BstDEI CTNAG 3 cut(s) 78, 642, 849
BstDSI CCRYGG 2 cut(s) 114, 1154
BstF5I GGATG 1 cut(s) 811
BstHHI GCGC 1 cut(s) 925
BstMAI GTCTC 3 cut(s) 167, 323, 545
BstMWI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 671, 931, 1024
BstNI CCWGG 2 cut(s) 129, 256
BstSCI CCNGG 2 cut(s) 127, 254
BstSFI CTRYAG 1 cut(s) 770
BstV1I GCAGC 6 cut(s) 424, 756, 784, 1030, 1033, 1036
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 3 cut(s) 478, 637, 777
BstYI RGATCY 3 cut(s) 478, 637, 777
Bsu36I CCTNAGG 1 cut(s) 642
BsuRI GGCC 3 cut(s) 119, 260, 1059
BtgI CCRYGG 2 cut(s) 114, 1154
BtsCI GGATG 1 cut(s) 811
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 2 cut(s) 364, 667
CciI TCATGA 4 cut(s) 21, 712, 1012, 1129
CfoI GCGC 1 cut(s) 925
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 2 cut(s) 258, 967
Csp6I GTAC 2 cut(s) 457, 974
CviAII CATG 7 cut(s) 22, 115, 713, 1013, 1064, 1130, 1155
CviQI GTAC 2 cut(s) 457, 974
DdeI CTNAG 3 cut(s) 78, 642, 849
DriI GACNNNNNGTC 1 cut(s) 500
EaeI YGGCCR 1 cut(s) 1057
Eam1104I CTCTTC 4 cut(s) 363, 533, 610, 1003
Eam1105I GACNNNNNGTC 1 cut(s) 500
EarI CTCTTC 4 cut(s) 363, 533, 610, 1003
Eco130I CCWWGG 3 cut(s) 114, 188, 1154
Eco24I GRGCYC 1 cut(s) 275
Eco47I GGWCC 1 cut(s) 967
Eco57I CTGAAG 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 642
EcoRII CCWGG 2 cut(s) 127, 254
EcoT14I CCWWGG 3 cut(s) 114, 188, 1154
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 3 cut(s) 114, 188, 1154
Esp3I CGTCTC 2 cut(s) 323, 545
FaeI CATG 7 cut(s) 25, 118, 716, 1016, 1067, 1133, 1158
FatI CATG 7 cut(s) 21, 114, 712, 1012, 1063, 1129, 1154
FauI CCCGC 1 cut(s) 1152
FbaI TGATCA 2 cut(s) 721, 1171
Fnu4HI GCNGC 7 cut(s) 438, 770, 773, 926, 1019, 1022, 1025
FokI GGATG 1 cut(s) 818
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 7 cut(s) 438, 770, 773, 926, 1019, 1022, 1025
FspBI CTAG 2 cut(s) 627, 882
GlaI GCGC 1 cut(s) 924
GluI GCNGC 7 cut(s) 438, 770, 773, 926, 1019, 1022, 1025
GsaI CCCAGC 1 cut(s) 1145
HaeIII GGCC 3 cut(s) 119, 260, 1059
HapII CCGG 2 cut(s) 339, 743
HhaI GCGC 1 cut(s) 925
Hin1II CATG 7 cut(s) 25, 118, 716, 1016, 1067, 1133, 1158
Hin6I GCGC 1 cut(s) 923
HinP1I GCGC 1 cut(s) 923
HincII GTYRAC 1 cut(s) 868
HindII GTYRAC 1 cut(s) 868
HinfI GANTC 6 cut(s) 25, 495, 811, 905, 1119, 1126
HpaII CCGG 2 cut(s) 339, 743
HphI GGTGA 3 cut(s) 56, 64, 1046
Hpy166II GTNNAC 2 cut(s) 459, 868
Hpy188I TCNGA 7 cut(s) 144, 310, 567, 910, 1047, 1105, 1189
Hpy8I GTNNAC 2 cut(s) 459, 868
HpyAV CCTTC 2 cut(s) 157, 650
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 3 cut(s) 59, 320, 422
HpyCH4V TGCA 2 cut(s) 430, 772
HpyF10VI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 671, 931, 1024
HpyF3I CTNAG 3 cut(s) 78, 642, 849
HpySE526I ACGT 3 cut(s) 59, 320, 422
Hsp92II CATG 7 cut(s) 25, 118, 716, 1016, 1067, 1133, 1158
HspAI GCGC 1 cut(s) 923
Kpn2I TCCGGA 1 cut(s) 742
Ksp22I TGATCA 2 cut(s) 721, 1171
LmnI GCTCC 3 cut(s) 324, 646, 1145
Lsp1109I GCAGC 6 cut(s) 424, 756, 784, 1030, 1033, 1036
LweI GCATC 2 cut(s) 439, 835
MaeI CTAG 2 cut(s) 627, 882
MaeII ACGT 3 cut(s) 59, 320, 422
MfeI CAATTG 1 cut(s) 935
MflI RGATCY 3 cut(s) 478, 637, 777
MhlI GDGCHC 1 cut(s) 275
MlsI TGGCCA 1 cut(s) 1059
MluCI AATT 7 cut(s) 17, 156, 215, 693, 751, 935, 1109
MluNI TGGCCA 1 cut(s) 1059
MlyI GAGTC 4 cut(s) 19, 489, 1113, 1120
Mox20I TGGCCA 1 cut(s) 1059
MroI TCCGGA 1 cut(s) 742
MscI TGGCCA 1 cut(s) 1059
MseI TTAA 1 cut(s) 1113
MslI CAYNNNNRTG 2 cut(s) 717, 1011
Msp20I TGGCCA 1 cut(s) 1059
MspA1I CMGCKG 1 cut(s) 1141
MspI CCGG 2 cut(s) 339, 743
MspR9I CCNGG 2 cut(s) 129, 256
MunI CAATTG 1 cut(s) 935
MvaI CCWGG 2 cut(s) 129, 256
MwoI GCNNNNNNNGC 6 cut(s) 177, 294, 303, 671, 931, 1024
NcoI CCATGG 2 cut(s) 114, 1154
NlaIII CATG 7 cut(s) 25, 118, 716, 1016, 1067, 1133, 1158
NlaIV GGNNCC 3 cut(s) 639, 741, 942
PagI TCATGA 4 cut(s) 21, 712, 1012, 1129
PcsI WCGNNNNNNNCGW 2 cut(s) 762, 1038
PfeI GAWTC 2 cut(s) 811, 905
PkrI GCNGC 7 cut(s) 439, 771, 774, 927, 1020, 1023, 1026
PleI GAGTC 4 cut(s) 19, 489, 1113, 1120
PpsI GAGTC 4 cut(s) 19, 489, 1113, 1120
Psp1406I AACGTT 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 127, 254
PspFI CCCAGC 1 cut(s) 1141
PspGI CCWGG 2 cut(s) 127, 254
PspN4I GGNNCC 3 cut(s) 639, 741, 942
PspPI GGNCC 2 cut(s) 258, 967
PstI CTGCAG 1 cut(s) 774
PsuI RGATCY 3 cut(s) 478, 637, 777
PvuII CAGCTG 1 cut(s) 1141
RsaI GTAC 2 cut(s) 458, 975
RsaNI GTAC 2 cut(s) 457, 974
RseI CAYNNNNRTG 2 cut(s) 717, 1011
SaqAI TTAA 1 cut(s) 1113
SatI GCNGC 7 cut(s) 438, 770, 773, 926, 1019, 1022, 1025
Sau96I GGNCC 2 cut(s) 258, 967
SchI GAGTC 4 cut(s) 19, 489, 1113, 1120
ScrFI CCNGG 2 cut(s) 129, 256
SduI GDGCHC 1 cut(s) 275
SfaNI GCATC 2 cut(s) 439, 835
SfcI CTRYAG 1 cut(s) 770
SinI GGWCC 1 cut(s) 967
SmiMI CAYNNNNRTG 2 cut(s) 717, 1011
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 7 cut(s) 17, 156, 215, 693, 751, 935, 1109
SsiI CCGC 3 cut(s) 728, 926, 1159
SspI AATATT 1 cut(s) 1075
SspMI CTAG 2 cut(s) 627, 882
StyD4I CCNGG 2 cut(s) 127, 254
StyI CCWWGG 3 cut(s) 114, 188, 1154
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 3 cut(s) 62, 323, 425
TaqI TCGA 1 cut(s) 1083
TasI AATT 7 cut(s) 17, 156, 215, 693, 751, 935, 1109
TatI WGTACW 2 cut(s) 456, 973
TauI GCSGC 1 cut(s) 928
TfiI GAWTC 2 cut(s) 811, 905
Tru1I TTAA 1 cut(s) 1113
Tru9I TTAA 1 cut(s) 1113
TscAI CASTG 2 cut(s) 364, 667
TseI GCWGC 6 cut(s) 437, 769, 772, 1018, 1021, 1024
TspDTI ATGAA 5 cut(s) 10, 417, 729, 1122, 1146
TspGWI ACGGA 1 cut(s) 347
TspRI CASTG 2 cut(s) 364, 667
VpaK11BI GGWCC 1 cut(s) 967
XapI RAATTY 2 cut(s) 156, 1109
XspI CTAG 2 cut(s) 627, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.