Rh5DG315400
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000636
Physical Location & Seq
Forward (+)
40456545 .. 40458011
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG315400.1

Sequence Viewer

Length: 993 bp
ATGGCCTCTTCTTTCATGCGCCTAGAAGAGCTTGATGTGGGGGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACAGAATCAAATCCCCAACCCCAATTGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACCACAGGTTTACCCCCGTGGGATATATGGAGAACTTATGAGGCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCCCCGGTCAAGAAGTTAGGTTCCCGCTGTTTTCGCAGAATTGGCTGCGATGGGGGCACCTGGAGCGAGACTGAATCTGCTAAACCTGTCCATGTCAGTGGAATTGAAGAGCCTTATGGGAAGCTAAGGAAATTTAGATACGAAAACAACAGAGACAAAGGCTGTCAACACCATGCTGCTTGGTTGATGGATGAATTCACCATCAACCAAGCACCCGATTTGGCTTTGTGCCGGCTCAAACTCAATGACAAAGGAGGAGCAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGATGAGAATCACAGAAAGACAATGTCTTTCAAAAACCGAAAACTTGAACCGAAAAGAGTTCAAGTTCAAAACAACATGTGTGAGCAACAAAAGGGAAGTGCCTCATTTAGTAGTACTAGCACCACACAGCAACTGCCCCCACAATGTGATGATCATGCTTACTGTATGGATGAGAACCTACTTTTCTCTCCAACCGGCTTGGTTGATGATTATGATGACATTTTGAATAATGATCAGTTTCTGGCTTCTCTTGATCAATGGTATGAGGAACAACAACCACAGTTTTCAGATTCTTCACTACTAGTGCCGCAACAACAAGTAGAACCTAACAACAGTTGTGAGGAACAACAACAGCAACAAGGTGAGCAGCAGCTCTGTGGTGGTTTTGATATGACGGTTTATGGTTATCATGACCTTGATATTGATCTCGATACTCTACTTACAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

330

Amino Acids

37.89

Weight (kDa)

5.07

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 18 - 148 1.1e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 161, 299
AciI CCGC 2 cut(s) 268, 851
AcsI RAATTY 3 cut(s) 212, 374, 437
AdeI CACNNNGTG 1 cut(s) 689
AfaI GTAC 1 cut(s) 658
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 7 cut(s) 152, 350, 574, 590, 605, 611, 769
AhlI ACTAGT 1 cut(s) 844
AjnI CCWGG 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 508, 540
AluBI AGCT 4 cut(s) 31, 87, 367, 916
AluI AGCT 4 cut(s) 31, 87, 367, 916
Alw26I GTCTC 3 cut(s) 305, 390, 527
AlwNI CAGNNNCTG 2 cut(s) 676, 784
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 288, 419, 910, 913
ApoI RAATTY 3 cut(s) 212, 374, 437
Asp700I GAANNNNTTC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 21
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 2 cut(s) 433, 917
BaeGI GKGCMC 1 cut(s) 302
BanI GGYRCC 2 cut(s) 161, 299
BbvI GCAGC 4 cut(s) 275, 406, 922, 925
BccI CCATC 3 cut(s) 287, 424, 452
BciT130I CCWGG 1 cut(s) 304
BclI TGATCA 3 cut(s) 694, 775, 796
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 3 cut(s) 305, 390, 527
BcuI ACTAGT 1 cut(s) 844
BfaI CTAG 3 cut(s) 23, 660, 845
BisI GCNGC 5 cut(s) 289, 420, 851, 911, 914
BlsI GCNGC 5 cut(s) 290, 421, 852, 912, 915
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 2 cut(s) 248, 304
BmiI GGNNCC 3 cut(s) 163, 265, 301
BmrFI CCNGG 2 cut(s) 248, 304
BpmI CTGGAG 1 cut(s) 325
Bpu10I CCTNAGC 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 248
BsaBI GATNNNNATC 2 cut(s) 549, 966
BsaJI CCNNGG 2 cut(s) 179, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 2 cut(s) 474, 737
Bse8I GATNNNNATC 2 cut(s) 549, 966
BseBI CCWGG 1 cut(s) 304
BseDI CCNNGG 2 cut(s) 179, 246
BseGI GGATG 3 cut(s) 439, 550, 718
BseJI GATNNNNATC 2 cut(s) 549, 966
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 513
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 4 cut(s) 275, 406, 922, 925
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 161, 299
BsiSI CCGG 3 cut(s) 248, 475, 738
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 3 cut(s) 305, 390, 527
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 4 cut(s) 694, 775, 796, 967
BspACI CCGC 2 cut(s) 268, 851
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 136
BspHI TCATGA 1 cut(s) 952
BspLI GGNNCC 3 cut(s) 163, 265, 301
BspQI GCTCTTC 2 cut(s) 21, 345
BspT107I GGYRCC 2 cut(s) 161, 299
BsrFI RCCGGY 2 cut(s) 474, 737
BssAI RCCGGY 2 cut(s) 474, 737
BssECI CCNNGG 2 cut(s) 179, 246
BssMI GATC 4 cut(s) 694, 775, 796, 967
Bst2UI CCWGG 1 cut(s) 304
Bst4CI ACNGT 5 cut(s) 707, 825, 878, 940, 988
Bst6I CTCTTC 4 cut(s) 13, 21, 345, 515
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 144, 368
BstDSI CCRYGG 1 cut(s) 179
BstF5I GGATG 3 cut(s) 439, 550, 718
BstHHI GCGC 1 cut(s) 21
BstKTI GATC 4 cut(s) 697, 778, 799, 970
BstMAI GTCTC 3 cut(s) 305, 390, 527
BstMBI GATC 4 cut(s) 694, 775, 796, 967
BstMWI GCNNNNNNNGC 4 cut(s) 276, 285, 297, 306
BstNI CCWGG 1 cut(s) 304
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 2 cut(s) 246, 302
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 4 cut(s) 275, 406, 922, 925
BstXI CCANNNNNNTGG 1 cut(s) 341
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 3 cut(s) 439, 550, 718
BtsIMutI CAGTG 2 cut(s) 63, 346
Cac8I GCNNGC 1 cut(s) 476
CaiI CAGNNNCTG 2 cut(s) 676, 784
CciI TCATGA 1 cut(s) 952
CfoI GCGC 1 cut(s) 21
Cfr10I RCCGGY 2 cut(s) 474, 737
Csp6I GTAC 1 cut(s) 657
CviAII CATG 6 cut(s) 16, 335, 416, 619, 698, 953
CviQI GTAC 1 cut(s) 657
DdeI CTNAG 2 cut(s) 144, 368
DpnI GATC 4 cut(s) 696, 777, 798, 969
DpnII GATC 4 cut(s) 694, 775, 796, 967
DraIII CACNNNGTG 1 cut(s) 689
Eam1104I CTCTTC 4 cut(s) 13, 21, 345, 515
EarI CTCTTC 4 cut(s) 13, 21, 345, 515
EcoRI GAATTC 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 302
FaeI CATG 6 cut(s) 19, 338, 419, 622, 701, 956
FatI CATG 6 cut(s) 15, 334, 415, 618, 697, 952
FauI CCCGC 1 cut(s) 275
FbaI TGATCA 3 cut(s) 694, 775, 796
Fnu4HI GCNGC 5 cut(s) 289, 420, 851, 911, 914
FokI GGATG 3 cut(s) 446, 557, 725
Fsp4HI GCNGC 5 cut(s) 289, 420, 851, 911, 914
FspBI CTAG 3 cut(s) 23, 660, 845
GlaI GCGC 1 cut(s) 20
GluI GCNGC 5 cut(s) 289, 420, 851, 911, 914
GsuI CTGGAG 1 cut(s) 325
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 248, 475, 738
HhaI GCGC 1 cut(s) 21
Hin1II CATG 6 cut(s) 19, 338, 419, 622, 701, 956
Hin6I GCGC 1 cut(s) 19
HinP1I GCGC 1 cut(s) 19
HincII GTYRAC 1 cut(s) 410
HindII GTYRAC 1 cut(s) 410
HinfI GANTC 5 cut(s) 68, 102, 317, 550, 833
HpaII CCGG 3 cut(s) 248, 475, 738
HphI GGTGA 2 cut(s) 433, 917
Hpy166II GTNNAC 2 cut(s) 173, 410
Hpy188I TCNGA 4 cut(s) 73, 529, 832, 992
Hpy188III TCNNGA 5 cut(s) 224, 253, 794, 953, 971
Hpy8I GTNNAC 2 cut(s) 173, 410
HpyCH4III ACNGT 5 cut(s) 707, 825, 878, 940, 988
HpyF10VI GCNNNNNNNGC 4 cut(s) 276, 285, 297, 306
HpyF3I CTNAG 2 cut(s) 144, 368
Hsp92II CATG 6 cut(s) 19, 338, 419, 622, 701, 956
HspAI GCGC 1 cut(s) 19
KroI GCCGGC 1 cut(s) 474
KroNI GCCGGC 1 cut(s) 476
Ksp22I TGATCA 3 cut(s) 694, 775, 796
Kzo9I GATC 4 cut(s) 694, 775, 796, 967
LguI GCTCTTC 2 cut(s) 21, 345
LmnI GCTCC 2 cut(s) 306, 500
LpnPI CCDG 9 cut(s) 153, 156, 261, 289, 316, 342, 488, 751, 770
Lsp1109I GCAGC 4 cut(s) 275, 406, 922, 925
MaeI CTAG 3 cut(s) 23, 660, 845
MalI GATC 4 cut(s) 696, 777, 798, 969
MboI GATC 4 cut(s) 694, 775, 796, 967
MboII GAAGA 6 cut(s) 38, 232, 362, 529, 532, 828
MfeI CAATTG 1 cut(s) 120
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 6 cut(s) 120, 212, 282, 345, 374, 437
MmeI TCCRAC 1 cut(s) 758
MnlI CCTC 9 cut(s) 16, 119, 196, 491, 507, 535, 655, 802, 877
MroNI GCCGGC 1 cut(s) 474
MroXI GAANNNNTTC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 339
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 3 cut(s) 248, 475, 738
MspR9I CCNGG 2 cut(s) 248, 304
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 304
MwoI GCNNNNNNNGC 4 cut(s) 276, 285, 297, 306
NaeI GCCGGC 1 cut(s) 476
NciI CCSGG 1 cut(s) 248
NdeII GATC 4 cut(s) 694, 775, 796, 967
NgoMIV GCCGGC 1 cut(s) 474
NlaIII CATG 6 cut(s) 19, 338, 419, 622, 701, 956
NlaIV GGNNCC 3 cut(s) 163, 265, 301
NspI RCATGY 1 cut(s) 622
PagI TCATGA 1 cut(s) 952
PciI ACATGT 1 cut(s) 618
PciSI GCTCTTC 2 cut(s) 21, 345
PdiI GCCGGC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 53
PfeI GAWTC 5 cut(s) 68, 102, 317, 550, 833
PflFI GACNNNGTC 1 cut(s) 565
PkrI GCNGC 5 cut(s) 290, 421, 852, 912, 915
PscI ACATGT 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 302
PspGI CCWGG 1 cut(s) 302
PspN4I GGNNCC 3 cut(s) 163, 265, 301
PstNI CAGNNNCTG 2 cut(s) 676, 784
PsyI GACNNNGTC 1 cut(s) 565
RsaI GTAC 1 cut(s) 658
RsaNI GTAC 1 cut(s) 657
RseI CAYNNNNRTG 1 cut(s) 339
SapI GCTCTTC 2 cut(s) 21, 345
SatI GCNGC 5 cut(s) 289, 420, 851, 911, 914
Sau3AI GATC 4 cut(s) 694, 775, 796, 967
ScaI AGTACT 1 cut(s) 658
ScrFI CCNGG 2 cut(s) 248, 304
SduI GDGCHC 1 cut(s) 302
SmiMI CAYNNNNRTG 1 cut(s) 339
SpeI ACTAGT 1 cut(s) 844
Sse9I AATT 6 cut(s) 120, 212, 282, 345, 374, 437
SsiI CCGC 2 cut(s) 268, 851
SspMI CTAG 3 cut(s) 23, 660, 845
StyD4I CCNGG 2 cut(s) 246, 302
TaaI ACNGT 5 cut(s) 707, 825, 878, 940, 988
TaqI TCGA 1 cut(s) 972
TasI AATT 6 cut(s) 120, 212, 282, 345, 374, 437
TatI WGTACW 1 cut(s) 656
TauI GCSGC 1 cut(s) 853
TfiI GAWTC 5 cut(s) 68, 102, 317, 550, 833
TscAI CASTG 2 cut(s) 70, 346
TseI GCWGC 4 cut(s) 288, 419, 910, 913
TspDTI ATGAA 2 cut(s) 4, 450
TspRI CASTG 2 cut(s) 70, 346
Tth111I GACNNNGTC 1 cut(s) 565
XapI RAATTY 3 cut(s) 212, 374, 437
XceI RCATGY 1 cut(s) 622
XmnI GAANNNNTTC 1 cut(s) 53
XspI CTAG 3 cut(s) 23, 660, 845
ZrmI AGTACT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.