Rh5CG556100
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000636
Physical Location & Seq
Forward (+)
77497475 .. 77497846
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG556100.1

Sequence Viewer

Length: 372 bp
ATGGCTCTCGTAGATCAATTCATGACTCTGGATCAGCTTGATGTGGGTGTGGTGAAGACATTTCACCCTACTGAAGCCGAGTTGGTGGGTTTCTTTCTATACAACAAGATCTCCATGGCCTCAAGCTCAGGCAATCAGATTCAGACATTCCCTAAAATTTGTATATATGGTGAGACAGGCTTACCACCTTGGGAGATATGGAGGATATATCAGCAATTCAAGTTTCCCCACCAGGATTTTCTCTACTTCTTCTCCTGGACCAAGAAGGTTAGCCCCAACAAATCTCGCAACTCTGGCACAGTTAGCTCTGATGGGGGAACATGGAGAGAGACGGAAGCCGCTAGGCCTGTGTATATTAGAGGAAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

123

Amino Acids

14.13

Weight (kDa)

6.73

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 20 - 117 1.2e-11 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 339
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 2 cut(s) 231, 254
AluBI AGCT 3 cut(s) 37, 126, 306
AluI AGCT 3 cut(s) 37, 126, 306
Alw26I GTCTC 2 cut(s) 167, 323
AlwI GGATC 1 cut(s) 39
AoxI GGCC 2 cut(s) 117, 344
ApoI RAATTY 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 3 cut(s) 56, 64, 182
AvaII GGWCC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 62
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 233, 256
BcoDI GTCTC 2 cut(s) 167, 323
BfaI CTAG 1 cut(s) 342
BglII AGATCT 1 cut(s) 108
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 233, 256
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmrFI CCNGG 2 cut(s) 233, 256
BpiI GAAGAC 1 cut(s) 62
Bpu10I CCTNAGC 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 114, 188
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 236, 266
BseBI CCWGG 2 cut(s) 233, 256
BseDI CCNNGG 2 cut(s) 114, 188
BseMII CTCAG 1 cut(s) 141
BshFI GGCC 2 cut(s) 119, 346
BsmAI GTCTC 2 cut(s) 167, 323
BsmBI CGTCTC 1 cut(s) 323
BsnI GGCC 2 cut(s) 119, 346
Bsp143I GATC 3 cut(s) 13, 31, 108
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 1 cut(s) 339
BspANI GGCC 2 cut(s) 119, 346
BspCNI CTCAG 1 cut(s) 140
BspHI TCATGA 1 cut(s) 21
BspPI GGATC 1 cut(s) 39
BssECI CCNNGG 2 cut(s) 114, 188
BssMI GATC 3 cut(s) 13, 31, 108
BssT1I CCWWGG 2 cut(s) 114, 188
Bst2UI CCWGG 2 cut(s) 233, 256
Bst4CI ACNGT 1 cut(s) 301
BstDEI CTNAG 1 cut(s) 127
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 3 cut(s) 16, 34, 111
BstMAI GTCTC 2 cut(s) 167, 323
BstMBI GATC 3 cut(s) 13, 31, 108
BstMWI GCNNNNNNNGC 2 cut(s) 294, 303
BstNI CCWGG 2 cut(s) 233, 256
BstSCI CCNGG 2 cut(s) 231, 254
BstV2I GAAGAC 1 cut(s) 62
BstX2I RGATCY 1 cut(s) 108
BstYI RGATCY 1 cut(s) 108
BsuRI GGCC 2 cut(s) 119, 346
BtgI CCRYGG 1 cut(s) 114
CciI TCATGA 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 258
CviAII CATG 3 cut(s) 22, 115, 321
DdeI CTNAG 1 cut(s) 127
DpnI GATC 3 cut(s) 15, 33, 110
DpnII GATC 3 cut(s) 13, 31, 108
Eco130I CCWWGG 2 cut(s) 114, 188
Eco147I AGGCCT 1 cut(s) 346
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 231, 254
EcoT14I CCWWGG 2 cut(s) 114, 188
ErhI CCWWGG 2 cut(s) 114, 188
Esp3I CGTCTC 1 cut(s) 323
FaeI CATG 3 cut(s) 25, 118, 324
FatI CATG 3 cut(s) 21, 114, 320
Fnu4HI GCNGC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 2 cut(s) 119, 346
Hin1II CATG 3 cut(s) 25, 118, 324
HinfI GANTC 2 cut(s) 25, 139
HphI GGTGA 3 cut(s) 56, 64, 182
Hpy188I TCNGA 3 cut(s) 138, 144, 310
Hpy188III TCNNGA 2 cut(s) 22, 29
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 303
HpyF3I CTNAG 1 cut(s) 127
Hsp92II CATG 3 cut(s) 25, 118, 324
Kzo9I GATC 3 cut(s) 13, 31, 108
LpnPI CCDG 9 cut(s) 14, 114, 162, 218, 241, 245, 268, 279, 360
MaeI CTAG 1 cut(s) 342
MalI GATC 3 cut(s) 15, 33, 110
MboI GATC 3 cut(s) 13, 31, 108
MboII GAAGA 2 cut(s) 67, 241
MflI RGATCY 1 cut(s) 108
MluCI AATT 3 cut(s) 17, 156, 215
MlyI GAGTC 1 cut(s) 19
MnlI CCTC 3 cut(s) 130, 195, 353
MspR9I CCNGG 2 cut(s) 233, 256
MvaI CCWGG 2 cut(s) 233, 256
MwoI GCNNNNNNNGC 2 cut(s) 294, 303
NcoI CCATGG 1 cut(s) 114
NdeII GATC 3 cut(s) 13, 31, 108
NlaIII CATG 3 cut(s) 25, 118, 324
NmeAIII GCCGAG 1 cut(s) 103
PagI TCATGA 1 cut(s) 21
PceI AGGCCT 1 cut(s) 346
PfeI GAWTC 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 254
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Psp6I CCWGG 2 cut(s) 231, 254
PspGI CCWGG 2 cut(s) 231, 254
PspPI GGNCC 1 cut(s) 258
PsuI RGATCY 1 cut(s) 108
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 3 cut(s) 13, 31, 108
Sau96I GGNCC 1 cut(s) 258
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 2 cut(s) 233, 256
SetI ASST 5 cut(s) 39, 128, 190, 270, 308
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 3 cut(s) 17, 156, 215
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 1 cut(s) 339
SspMI CTAG 1 cut(s) 342
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 2 cut(s) 231, 254
StyI CCWWGG 2 cut(s) 114, 188
TaaI ACNGT 1 cut(s) 301
TasI AATT 3 cut(s) 17, 156, 215
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 1 cut(s) 139
TspDTI ATGAA 1 cut(s) 10
TspGWI ACGGA 1 cut(s) 347
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 1 cut(s) 156
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.