Rh5BG532200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000636
Physical Location & Seq
Forward (+)
83791420 .. 83791827
408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG532200.1

Sequence Viewer

Length: 408 bp
ATGGATGAGAATCTAAAGTTCTCTCCCACTATCTTGTTTGATGATAATGACGACATGTTGAATGATGCTCAGATTATGGCTTCTGTTGATCAATCAATAGCTAGTGAGCAACAACGACAACAATATTCGGATTATTCACTTGTGCCGCAACAGCAATTGGAACCTGACAGTAGGTGTCAAGTGGAGGACCAAACACAACTACAACAACAAGATCAACCCTCTTCCTCTCATTCTCATGAGCAGCAGCAGCTCATTGGTGATGACGATCTGATGATTTCTGGCCAACATGATTATAATATTCCACTCGATAACGACTTCTTATGGTCAGATGAATTTAATGGACTCTTTACTCATGAAGATCAGCTGGGAGCTCTGCCATGGCGGGATAGTGATGATCTGTTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.65

Weight (kDa)

4.05

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
AciI CCGC 2 cut(s) 146, 382
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 332
AflIII ACRYGT 1 cut(s) 54
AgsI TTSAA 1 cut(s) 61
AluBI AGCT 4 cut(s) 101, 250, 364, 371
AluI AGCT 4 cut(s) 101, 250, 364, 371
Alw21I GWGCWC 1 cut(s) 373
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 241, 244, 247
ApoI RAATTY 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 282
BanII GRGCYC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 3 cut(s) 253, 256, 259
BclI TGATCA 1 cut(s) 88
BfaI CTAG 1 cut(s) 102
BisI GCNGC 4 cut(s) 146, 242, 245, 248
BlsI GCNGC 4 cut(s) 147, 243, 246, 249
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 162
BmsI GCATC 1 cut(s) 55
BsaBI GATNNNNATC 2 cut(s) 9, 264
BsaJI CCNNGG 1 cut(s) 377
Bse8I GATNNNNATC 2 cut(s) 9, 264
BseDI CCNNGG 1 cut(s) 377
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 2 cut(s) 9, 264
BseMII CTCAG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 253, 256, 259
BseYI CCCAGC 1 cut(s) 364
BshFI GGCC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 373
BsnI GGCC 1 cut(s) 282
Bsp1286I GDGCHC 1 cut(s) 373
Bsp143I GATC 5 cut(s) 88, 211, 265, 358, 394
Bsp19I CCATGG 1 cut(s) 377
BspACI CCGC 2 cut(s) 146, 382
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 82
BspHI TCATGA 2 cut(s) 235, 352
BspLI GGNNCC 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 377
BssMI GATC 5 cut(s) 88, 211, 265, 358, 394
BssT1I CCWWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 226
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 5 cut(s) 91, 214, 268, 361, 397
BstMBI GATC 5 cut(s) 88, 211, 265, 358, 394
BstMWI GCNNNNNNNGC 2 cut(s) 151, 247
BstNSI RCATGY 1 cut(s) 58
BstV1I GCAGC 3 cut(s) 253, 256, 259
BsuRI GGCC 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 1 cut(s) 10
CciI TCATGA 2 cut(s) 235, 352
Cfr13I GGNCC 1 cut(s) 187
CviAII CATG 5 cut(s) 55, 236, 287, 353, 378
CviJI RGCY 6 cut(s) 80, 101, 250, 282, 364, 371
CviKI_1 RGCY 6 cut(s) 80, 101, 250, 282, 364, 371
DdeI CTNAG 1 cut(s) 69
DpnI GATC 5 cut(s) 90, 213, 267, 360, 396
DpnII GATC 5 cut(s) 88, 211, 265, 358, 394
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Ecl136II GAGCTC 1 cut(s) 371
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 371
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 373
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 5 cut(s) 58, 239, 290, 356, 381
FaiI YATR 8 cut(s) 56, 77, 237, 288, 294, 322, 354, 379
FatI CATG 5 cut(s) 54, 235, 286, 352, 377
FauI CCCGC 1 cut(s) 375
FbaI TGATCA 1 cut(s) 88
Fnu4HI GCNGC 4 cut(s) 146, 242, 245, 248
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 373
Fsp4HI GCNGC 4 cut(s) 146, 242, 245, 248
FspBI CTAG 1 cut(s) 102
GluI GCNGC 4 cut(s) 146, 242, 245, 248
GsaI CCCAGC 1 cut(s) 368
HaeIII GGCC 1 cut(s) 282
Hin1II CATG 5 cut(s) 58, 239, 290, 356, 381
HinfI GANTC 2 cut(s) 10, 342
HphI GGTGA 1 cut(s) 269
Hpy188I TCNGA 4 cut(s) 72, 130, 270, 328
Hpy188III TCNNGA 2 cut(s) 236, 353
HpyCH4III ACNGT 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 247
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 5 cut(s) 58, 239, 290, 356, 381
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 5 cut(s) 88, 211, 265, 358, 394
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 3 cut(s) 177, 264, 350
Lsp1109I GCAGC 3 cut(s) 253, 256, 259
LweI GCATC 1 cut(s) 55
MaeI CTAG 1 cut(s) 102
MalI GATC 5 cut(s) 90, 213, 267, 360, 396
MboI GATC 5 cut(s) 88, 211, 265, 358, 394
MboII GAAGA 2 cut(s) 213, 368
MfeI CAATTG 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 373
MlsI TGGCCA 1 cut(s) 282
MluCI AATT 2 cut(s) 155, 332
MluNI TGGCCA 1 cut(s) 282
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 3 cut(s) 178, 229, 235
Mox20I TGGCCA 1 cut(s) 282
MscI TGGCCA 1 cut(s) 282
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 234
Msp20I TGGCCA 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 364
MunI CAATTG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 151, 247
NcoI CCATGG 1 cut(s) 377
NdeII GATC 5 cut(s) 88, 211, 265, 358, 394
NlaIII CATG 5 cut(s) 58, 239, 290, 356, 381
NlaIV GGNNCC 1 cut(s) 162
NspI RCATGY 1 cut(s) 58
PagI TCATGA 2 cut(s) 235, 352
PciI ACATGT 1 cut(s) 54
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 4 cut(s) 147, 243, 246, 249
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PscI ACATGT 1 cut(s) 54
PsiI TTATAA 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 162
PspPI GGNCC 1 cut(s) 187
PvuII CAGCTG 1 cut(s) 364
RseI CAYNNNNRTG 1 cut(s) 234
SacI GAGCTC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 4 cut(s) 146, 242, 245, 248
Sau3AI GATC 5 cut(s) 88, 211, 265, 358, 394
Sau96I GGNCC 1 cut(s) 187
SchI GAGTC 1 cut(s) 336
SduI GDGCHC 1 cut(s) 373
SetI ASST 6 cut(s) 103, 166, 176, 252, 366, 373
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 234
Sse9I AATT 2 cut(s) 155, 332
SsiI CCGC 2 cut(s) 146, 382
SspI AATATT 2 cut(s) 125, 298
SspMI CTAG 1 cut(s) 102
SstI GAGCTC 1 cut(s) 373
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 306
TasI AATT 2 cut(s) 155, 332
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TseI GCWGC 3 cut(s) 241, 244, 247
TspDTI ATGAA 2 cut(s) 345, 369
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 332
XceI RCATGY 1 cut(s) 58
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.