Rh7BG452200
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000636
Physical Location & Seq
Reverse (-)
53129807 .. 53131037
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG452200.1

Sequence Viewer

Length: 1212 bp
ATGGCTTCTTCTTCTTGTTCAATTTCTTGTTTCATGAGCCTAGAAGACCTTGATGTCGGTGTTGTGAAAACATTCCACCCCACTGATTCTGATTTAGTGGGAAGCTATCTCTACAACAAAATCAAATCCCCAACCCCAATTGGAGGAAAACAAACATTCCCTGAGATTGAAATATATGGCACAACAGGTTTACCACCATGGGATATATGGAGAATTTATGAGCCTTCCAAATTTCCACATCAAGATTATATCTATTTCTTCTCTCGGGTCAAGAAGTTGGGTTCCCGCTGTTCTCGCAGAATTGGCTGCGATGGGGGCACATGGAGCGAGACTGAAGCTGCTAAACCTGTCTATGTCAGTGGAATTGAAGAGCCTTATGGGAAACTAAGGAAGTTTCGATACGAGAACAACAAACACAAAGGCTTTGAACACCATGCTGCTTGGTTGATGGATGAGTTCACCATCAACCAAGCACCAGATCTGGCTTTGTGCCGACTCAAAGTCAATGATAAAGGAGGAGGAAGAAAAAAGAGGAAGAAGAGTTCTGATGAGACTAATGAGGATGAGAATGTGAGAAGCAAAAAGTGTTTGAAAAACCGAAAAGTTGAACCGAGAAGAGATCAAACTAGTTTCATGTGTGAGCAGCAACAAGAAGGCAGTGCCTCCTTTGCTAGTACTACTTCACAGCTAATTCTCTCTCCCTATCATCATGAAGATGATCAAGTGGTTCAGGTGGTTCCGGAGAACAGTGACGATTATGATGAGCTACAGCAGATCCTCTTTAGTGATGATGATTGTATGGATGAGAATCTAATGTTCTCTCCCACTATCTTGTTTGATGATGCTCAGCTTATGGCTTCTGTTGATCAATCAATAGCTATTGAGCAACAACAACAACAAGATTCGGATTATTCACTTGCGCCGCAACAGCAATTGGAACCTGACAATAGGTGTCAAGAGGAGGACCAAATACAACAACAACAACAACAACAACAACAAGATCAGCCCTCTTCCTCTCATTCTCATGAGCAGCAGCAGCTCATCGGTGATGACGATCTGATGATTTATGGCCAACATGACTATAATATTCCACTCGATAACGACTTCTTATGGTCAGATGAATTTAATGGACTCTTTACTCATGAAGATCAGCTGGGAGCTGTGCCATGGCGGGATAGTGATGATCAGTTTCAGTATTCTGACATCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

403

Amino Acids

46.43

Weight (kDa)

4.58

Isoelectric Point (pI)

61.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 24 - 154 1.9e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AccIII TCCGGA 1 cut(s) 739
AciI CCGC 3 cut(s) 286, 923, 1171
AclWI GGATC 1 cut(s) 769
AcoI YGGCCR 1 cut(s) 1069
AcsI RAATTY 3 cut(s) 213, 230, 1121
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 6 cut(s) 21, 170, 368, 428, 592, 608
AhdI GACNNNNNGTC 1 cut(s) 500
AhlI ACTAGT 1 cut(s) 626
AloI GAACNNNNNNTCC 2 cut(s) 526, 558
AluBI AGCT 9 cut(s) 105, 338, 688, 766, 850, 878, 1039, 1153, 1160
AluI AGCT 9 cut(s) 105, 338, 688, 766, 850, 878, 1039, 1153, 1160
Alw26I GTCTC 2 cut(s) 323, 545
AlwI GGATC 1 cut(s) 769
Ama87I CYCGRG 1 cut(s) 264
Aor13HI TCCGGA 1 cut(s) 739
AoxI GGCC 1 cut(s) 1069
ApeKI GCWGC 7 cut(s) 306, 338, 437, 643, 1030, 1033, 1036
ApoI RAATTY 3 cut(s) 213, 230, 1121
Asp700I GAANNNNTTC 1 cut(s) 71
AspLEI GCGC 1 cut(s) 922
AspS9I GGNCC 1 cut(s) 964
AsuHPI GGTGA 2 cut(s) 451, 1058
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 1 cut(s) 964
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 1071
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 7 cut(s) 293, 325, 424, 655, 1042, 1045, 1048
BccI CCATC 3 cut(s) 305, 442, 470
BclI TGATCA 3 cut(s) 718, 865, 1183
BcoDI GTCTC 2 cut(s) 323, 545
BcuI ACTAGT 1 cut(s) 626
BfaI CTAG 3 cut(s) 41, 627, 672
BfmI CTRYAG 1 cut(s) 767
BglII AGATCT 1 cut(s) 478
BisI GCNGC 8 cut(s) 307, 339, 438, 644, 923, 1031, 1034, 1037
BlpI GCTNAGC 1 cut(s) 846
BlsI GCNGC 8 cut(s) 308, 340, 439, 645, 924, 1032, 1035, 1038
BmcAI AGTACT 1 cut(s) 676
Bme18I GGWCC 1 cut(s) 964
BmeRI GACNNNNNGTC 1 cut(s) 500
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 964
BmiI GGNNCC 3 cut(s) 283, 738, 939
BmsI GCATC 1 cut(s) 832
BpiI GAAGAC 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 846
BsaBI GATNNNNATC 2 cut(s) 807, 1053
BsaJI CCNNGG 2 cut(s) 197, 1166
BsaWI WCCGGW 1 cut(s) 739
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse8I GATNNNNATC 2 cut(s) 807, 1053
BseAI TCCGGA 1 cut(s) 739
BseDI CCNNGG 2 cut(s) 197, 1166
BseGI GGATG 3 cut(s) 457, 568, 808
BseJI GATNNNNATC 2 cut(s) 807, 1053
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 2 cut(s) 153, 860
BseRI GAGGAG 2 cut(s) 531, 974
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 7 cut(s) 293, 325, 424, 655, 1042, 1045, 1048
BseYI CCCAGC 1 cut(s) 1153
BshFI GGCC 1 cut(s) 1071
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 740
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 323, 545
BsnI GGCC 1 cut(s) 1071
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 320
Bsp13I TCCGGA 1 cut(s) 739
Bsp143I GATC 9 cut(s) 478, 619, 718, 774, 865, 1000, 1054, 1147, 1183
Bsp1720I GCTNAGC 1 cut(s) 846
Bsp19I CCATGG 2 cut(s) 197, 1166
BspACI CCGC 3 cut(s) 286, 923, 1171
BspANI GGCC 1 cut(s) 1071
BspCNI CTCAG 2 cut(s) 154, 859
BspEI TCCGGA 1 cut(s) 739
BspHI TCATGA 4 cut(s) 33, 709, 1024, 1141
BspLI GGNNCC 3 cut(s) 283, 738, 939
BspPI GGATC 1 cut(s) 769
BspQI GCTCTTC 1 cut(s) 363
BssECI CCNNGG 2 cut(s) 197, 1166
BssMI GATC 9 cut(s) 478, 619, 718, 774, 865, 1000, 1054, 1147, 1183
BssT1I CCWWGG 2 cut(s) 197, 1166
Bst4CI ACNGT 1 cut(s) 749
Bst6I CTCTTC 4 cut(s) 363, 533, 610, 1015
BstDEI CTNAG 3 cut(s) 162, 386, 846
BstDSI CCRYGG 2 cut(s) 197, 1166
BstF5I GGATG 3 cut(s) 457, 568, 808
BstHHI GCGC 1 cut(s) 922
BstKTI GATC 9 cut(s) 481, 622, 721, 777, 868, 1003, 1057, 1150, 1186
BstMAI GTCTC 2 cut(s) 323, 545
BstMBI GATC 9 cut(s) 478, 619, 718, 774, 865, 1000, 1054, 1147, 1183
BstMWI GCNNNNNNNGC 7 cut(s) 294, 303, 315, 324, 668, 928, 1036
BstSFI CTRYAG 1 cut(s) 767
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 7 cut(s) 293, 325, 424, 655, 1042, 1045, 1048
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 478, 774
BstYI RGATCY 2 cut(s) 478, 774
BsuRI GGCC 1 cut(s) 1071
BtgI CCRYGG 2 cut(s) 197, 1166
BtgZI GCGATG 1 cut(s) 324
BtsCI GGATG 3 cut(s) 457, 568, 808
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 4 cut(s) 81, 364, 664, 754
CciI TCATGA 4 cut(s) 33, 709, 1024, 1141
CfoI GCGC 1 cut(s) 922
Cfr13I GGNCC 1 cut(s) 964
Csp6I GTAC 1 cut(s) 675
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 3 cut(s) 162, 386, 846
DpnI GATC 9 cut(s) 480, 621, 720, 776, 867, 1002, 1056, 1149, 1185
DpnII GATC 9 cut(s) 478, 619, 718, 774, 865, 1000, 1054, 1147, 1183
DrdI GACNNNNNNGTC 1 cut(s) 53
DriI GACNNNNNGTC 1 cut(s) 500
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 1069
Eam1104I CTCTTC 4 cut(s) 363, 533, 610, 1015
Eam1105I GACNNNNNGTC 1 cut(s) 500
EarI CTCTTC 4 cut(s) 363, 533, 610, 1015
Eco130I CCWWGG 2 cut(s) 197, 1166
Eco47I GGWCC 1 cut(s) 964
Eco57I CTGAAG 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 264
EcoT14I CCWWGG 2 cut(s) 197, 1166
ErhI CCWWGG 2 cut(s) 197, 1166
FauI CCCGC 2 cut(s) 293, 1164
FbaI TGATCA 3 cut(s) 718, 865, 1183
Fnu4HI GCNGC 8 cut(s) 307, 339, 438, 644, 923, 1031, 1034, 1037
FokI GGATG 3 cut(s) 464, 575, 815
Fsp4HI GCNGC 8 cut(s) 307, 339, 438, 644, 923, 1031, 1034, 1037
FspBI CTAG 3 cut(s) 41, 627, 672
GlaI GCGC 1 cut(s) 921
GluI GCNGC 8 cut(s) 307, 339, 438, 644, 923, 1031, 1034, 1037
GsaI CCCAGC 1 cut(s) 1157
HaeIII GGCC 1 cut(s) 1071
HapII CCGG 1 cut(s) 740
HhaI GCGC 1 cut(s) 922
Hin6I GCGC 1 cut(s) 920
HinP1I GCGC 1 cut(s) 920
HinfI GANTC 5 cut(s) 86, 495, 808, 902, 1131
HpaII CCGG 1 cut(s) 740
HphI GGTGA 2 cut(s) 451, 1058
Hpy166II GTNNAC 2 cut(s) 191, 459
Hpy188I TCNGA 6 cut(s) 91, 547, 907, 1059, 1117, 1201
Hpy188III TCNNGA 8 cut(s) 34, 242, 271, 710, 740, 956, 1025, 1142
Hpy8I GTNNAC 2 cut(s) 191, 459
HpyAV CCTTC 2 cut(s) 234, 647
HpyCH4III ACNGT 1 cut(s) 749
HpyF10VI GCNNNNNNNGC 7 cut(s) 294, 303, 315, 324, 668, 928, 1036
HpyF3I CTNAG 3 cut(s) 162, 386, 846
HspAI GCGC 1 cut(s) 920
Kpn2I TCCGGA 1 cut(s) 739
Ksp22I TGATCA 3 cut(s) 718, 865, 1183
Kzo9I GATC 9 cut(s) 478, 619, 718, 774, 865, 1000, 1054, 1147, 1183
LguI GCTCTTC 1 cut(s) 363
LmnI GCTCC 2 cut(s) 324, 1157
LpnPI CCDG 9 cut(s) 171, 174, 360, 467, 489, 716, 753, 954, 1139
Lsp1109I GCAGC 7 cut(s) 293, 325, 424, 655, 1042, 1045, 1048
LweI GCATC 1 cut(s) 832
MaeI CTAG 3 cut(s) 41, 627, 672
MaeIII GTNAC 1 cut(s) 749
MalI GATC 9 cut(s) 480, 621, 720, 776, 867, 1002, 1056, 1149, 1185
MboI GATC 9 cut(s) 478, 619, 718, 774, 865, 1000, 1054, 1147, 1183
MfeI CAATTG 2 cut(s) 138, 932
MflI RGATCY 2 cut(s) 478, 774
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 1071
MluCI AATT 9 cut(s) 21, 138, 213, 230, 300, 363, 690, 932, 1121
MluNI TGGCCA 1 cut(s) 1071
MlyI GAGTC 2 cut(s) 489, 1125
Mox20I TGGCCA 1 cut(s) 1071
MroI TCCGGA 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 71
MscI TGGCCA 1 cut(s) 1071
MseI TTAA 1 cut(s) 1125
MslI CAYNNNNRTG 2 cut(s) 714, 1023
Msp20I TGGCCA 1 cut(s) 1071
MspA1I CMGCKG 2 cut(s) 288, 1153
MspI CCGG 1 cut(s) 740
MunI CAATTG 2 cut(s) 138, 932
MwoI GCNNNNNNNGC 7 cut(s) 294, 303, 315, 324, 668, 928, 1036
NcoI CCATGG 2 cut(s) 197, 1166
NdeII GATC 9 cut(s) 478, 619, 718, 774, 865, 1000, 1054, 1147, 1183
NlaIV GGNNCC 3 cut(s) 283, 738, 939
NmuCI GTSAC 1 cut(s) 749
PagI TCATGA 4 cut(s) 33, 709, 1024, 1141
PciSI GCTCTTC 1 cut(s) 363
PcsI WCGNNNNNNNCGW 1 cut(s) 1050
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 3 cut(s) 86, 808, 902
PkrI GCNGC 8 cut(s) 308, 340, 439, 645, 924, 1032, 1035, 1038
PleI GAGTC 2 cut(s) 489, 1125
PpsI GAGTC 2 cut(s) 489, 1125
PspFI CCCAGC 1 cut(s) 1153
PspN4I GGNNCC 3 cut(s) 283, 738, 939
PspPI GGNCC 1 cut(s) 964
PsuI RGATCY 2 cut(s) 478, 774
PvuII CAGCTG 1 cut(s) 1153
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
RseI CAYNNNNRTG 2 cut(s) 714, 1023
SapI GCTCTTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 1125
SatI GCNGC 8 cut(s) 307, 339, 438, 644, 923, 1031, 1034, 1037
Sau3AI GATC 9 cut(s) 478, 619, 718, 774, 865, 1000, 1054, 1147, 1183
Sau96I GGNCC 1 cut(s) 964
ScaI AGTACT 1 cut(s) 676
SchI GAGTC 2 cut(s) 489, 1125
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 1 cut(s) 832
SfcI CTRYAG 1 cut(s) 767
SinI GGWCC 1 cut(s) 964
SmiMI CAYNNNNRTG 2 cut(s) 714, 1023
SpeI ACTAGT 1 cut(s) 626
Sse9I AATT 9 cut(s) 21, 138, 213, 230, 300, 363, 690, 932, 1121
SsiI CCGC 3 cut(s) 286, 923, 1171
SspI AATATT 1 cut(s) 1087
SspMI CTAG 3 cut(s) 41, 627, 672
StyI CCWWGG 2 cut(s) 197, 1166
TaaI ACNGT 1 cut(s) 749
TaqI TCGA 2 cut(s) 397, 1095
TasI AATT 9 cut(s) 21, 138, 213, 230, 300, 363, 690, 932, 1121
TatI WGTACW 1 cut(s) 674
TauI GCSGC 1 cut(s) 925
TfiI GAWTC 3 cut(s) 86, 808, 902
Tru1I TTAA 1 cut(s) 1125
Tru9I TTAA 1 cut(s) 1125
TscAI CASTG 4 cut(s) 88, 364, 664, 754
TseFI GTSAC 1 cut(s) 749
TseI GCWGC 7 cut(s) 306, 338, 437, 643, 1030, 1033, 1036
Tsp45I GTSAC 1 cut(s) 749
TspDTI ATGAA 5 cut(s) 22, 622, 726, 1134, 1158
TspRI CASTG 4 cut(s) 88, 364, 664, 754
VpaK11BI GGWCC 1 cut(s) 964
XapI RAATTY 3 cut(s) 213, 230, 1121
XcmI CCANNNNNNNNNTGG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 3 cut(s) 41, 627, 672
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.