Rmu_sc0021209.1_g000001
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021209.1
OG0000636
Physical Location & Seq
Forward (+)
1440 .. 1883
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021209.1_g000001.1.cds

Sequence Viewer

Length: 444 bp
atgagcctagaagaccttgacgtgggtgttgtgaaaacattccaccgcactgattctgatttagtgggaagctatctctacaacagaatcaaatccccaaccccaattggaaaacaaacattccctgagattgaaatatatggcaccacaggtttaccaccatgggatatatggagaatttatgagccttccaaatttccacatcaagattatatctatttcttctcccgggtcaaaaagttgggttcccgctgttctcgcagaattggctgcgatgggggcacatggagaaagaccgaagctgctaaacctatctatgtcagtggaattgaagagccttatgggaaactaaggaagtttcgatacgagaacaacaaagacaaagcctttgagcatcatgctacttggttgatggatgatgatacgctcaaagcaagcgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

147

Amino Acids

17.09

Weight (kDa)

8.78

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000636)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g36290 FvH4_5g27770 FvH4_5g29860 FvH4_5g37342 FvH4_5g37877 FvH4_5g37880 FvH4_5g37900 FvH4_6g40020
rosa_chinensis RchiOBHm_Chr7g0227221 RchiOBHm_Chr7g0239011
rosa_multiflora Rmu_co8202712.1_g000001 Rmu_sc0000477.1_g000006 Rmu_sc0001047.1_g000050 Rmu_sc0001371.1_g000021 Rmu_sc0002449.1_g000018 Rmu_sc0002988.1_g000003 Rmu_sc0003089.1_g000031 Rmu_sc0004062.1_g000013 Rmu_sc0004132.1_g000001 Rmu_sc0004277.1_g000045 Rmu_sc0004567.1_g000017 Rmu_sc0005327.1_g000024 Rmu_sc0005651.1_g000005 Rmu_sc0006669.1_g000014 Rmu_sc0018004.1_g000002 Rmu_sc0018978.1_g000001 Rmu_sc0021209.1_g000001 Rmu_sc0034369.1_g000001 Rmu_ssc0000398.1_g000019
rosa_roxburghii Rroxscaffold_1G00004410 Rroxscaffold_3G00220090 Rroxscaffold_3G00221380 Rroxscaffold_3G00222090 Rroxscaffold_3G00223100 Rroxscaffold_6G00400160 Rroxscaffold_7G00204490 Rroxscaffold_7G00204500
rosa_rugosa Rorug02G0147900 Rorug03G0117000 Rorug03G0194000 Rorug04G0112500 Rorug05G0218600 Rorug05G0218700 Rorug05G0218800 Rorug05G0218900 Rorug05G0219000 Rorug05G0219000 Rorug05G0219000 Rorug05G0219100 Rorug05G0220000 Rorug05G0574900 Rorug07G0311900 Rorug07G0312000 Rorug07G0324500 Rorug07G0324600
rosa_samantha Rh3BG280100 Rh4BG071800 Rh5BG306100 Rh5BG308200 Rh5BG313000 Rh5BG335200 Rh5BG532100 Rh5BG532200 Rh5CG556100 Rh5DG315400 Rh5DG318300 Rh5DG318400 Rh5DG347500 Rh6CG116800 Rh7BG420800 Rh7BG437600 Rh7BG452200 Rh7CG484800 Rh7CG496900 Rh7DG453200 Rh7DG464300
rosa_wichuraiana Rw7G039600 Rw7G041070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 2 cut(s) 46, 250
AcsI RAATTY 2 cut(s) 177, 194
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 2 cut(s) 134, 332
AjiI CACGTC 1 cut(s) 22
AluBI AGCT 2 cut(s) 72, 302
AluI AGCT 2 cut(s) 72, 302
Ama87I CYCGRG 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 270, 302
ApoI RAATTY 2 cut(s) 177, 194
ArsI GACNNNNNNTTYG 2 cut(s) 371, 403
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 440
AsuC2I CCSGG 2 cut(s) 229, 230
AvaI CYCGRG 1 cut(s) 228
BaeGI GKGCMC 1 cut(s) 284
BanI GGYRCC 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 347, 379
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 257, 289
BccI CCATC 2 cut(s) 269, 406
BcnI CCSGG 2 cut(s) 229, 230
BfaI CTAG 1 cut(s) 8
BisI GCNGC 2 cut(s) 271, 303
BlsI GCNGC 2 cut(s) 272, 304
Bme1390I CCNGG 2 cut(s) 229, 230
BmeT110I CYCGRG 1 cut(s) 228
BmgBI CACGTC 1 cut(s) 22
BmiI GGNNCC 2 cut(s) 145, 247
BmrFI CCNGG 2 cut(s) 229, 230
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 18
BpuMI CCSGG 2 cut(s) 229, 230
BsaJI CCNNGG 2 cut(s) 161, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 161, 228
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 117
BseSI GKGCMC 1 cut(s) 284
BseXI GCAGC 2 cut(s) 257, 289
BshNI GGYRCC 1 cut(s) 143
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 1 cut(s) 229
BslI CCNNNNNNNGG 1 cut(s) 22
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 284
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 2 cut(s) 46, 250
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 145, 247
BspQI GCTCTTC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 161, 228
BssT1I CCWWGG 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 126, 350
BstDSI CCRYGG 1 cut(s) 161
BstF5I GGATG 1 cut(s) 421
BstHHI GCGC 1 cut(s) 440
BstMWI GCNNNNNNNGC 3 cut(s) 258, 267, 279
BstSCI CCNGG 2 cut(s) 227, 228
BstSLI GKGCMC 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 257, 289
BstV2I GAAGAC 1 cut(s) 18
BtgI CCRYGG 1 cut(s) 161
BtgZI GCGATG 1 cut(s) 288
BtrI CACGTC 1 cut(s) 22
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 2 cut(s) 48, 328
Cac8I GCNNGC 1 cut(s) 436
CfoI GCGC 1 cut(s) 440
Cfr9I CCCGGG 1 cut(s) 228
CviAII CATG 3 cut(s) 162, 285, 398
CviJI RGCY 7 cut(s) 6, 72, 187, 270, 302, 337, 386
CviKI_1 RGCY 7 cut(s) 6, 72, 187, 270, 302, 337, 386
DdeI CTNAG 2 cut(s) 126, 350
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 228
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
FaeI CATG 3 cut(s) 165, 288, 401
FatI CATG 3 cut(s) 161, 284, 397
FauI CCCGC 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 271, 303
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 2 cut(s) 271, 303
FspBI CTAG 1 cut(s) 8
GlaI GCGC 1 cut(s) 439
GluI GCNGC 2 cut(s) 271, 303
HapII CCGG 1 cut(s) 229
HhaI GCGC 1 cut(s) 440
Hin1II CATG 3 cut(s) 165, 288, 401
Hin6I GCGC 1 cut(s) 438
HinP1I GCGC 1 cut(s) 438
HinfI GANTC 2 cut(s) 53, 87
HpaII CCGG 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 267, 279
HpyF3I CTNAG 2 cut(s) 126, 350
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 3 cut(s) 165, 288, 401
HspAI GCGC 1 cut(s) 438
LguI GCTCTTC 1 cut(s) 327
LpnPI CCDG 3 cut(s) 135, 138, 242
Lsp1109I GCAGC 2 cut(s) 257, 289
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 8
MaeII ACGT 1 cut(s) 21
MboII GAAGA 3 cut(s) 23, 214, 344
MfeI CAATTG 1 cut(s) 105
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 5 cut(s) 105, 177, 194, 264, 327
MroXI GAANNNNTTC 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 1 cut(s) 229
MspR9I CCNGG 2 cut(s) 229, 230
MunI CAATTG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 258, 267, 279
NciI CCSGG 2 cut(s) 229, 230
NcoI CCATGG 1 cut(s) 161
NlaIII CATG 3 cut(s) 165, 288, 401
NlaIV GGNNCC 2 cut(s) 145, 247
PciSI GCTCTTC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 53, 87
PkrI GCNGC 2 cut(s) 272, 304
PspN4I GGNNCC 2 cut(s) 145, 247
SapI GCTCTTC 1 cut(s) 327
SatI GCNGC 2 cut(s) 271, 303
ScrFI CCNGG 2 cut(s) 229, 230
SduI GDGCHC 1 cut(s) 284
SetI ASST 6 cut(s) 18, 24, 74, 154, 304, 313
SfaNI GCATC 1 cut(s) 403
SmaI CCCGGG 1 cut(s) 230
Sse9I AATT 5 cut(s) 105, 177, 194, 264, 327
SsiI CCGC 2 cut(s) 46, 250
SspMI CTAG 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 227, 228
StyI CCWWGG 1 cut(s) 161
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 361
TaqII GACCGA 1 cut(s) 311
TasI AATT 5 cut(s) 105, 177, 194, 264, 327
TfiI GAWTC 2 cut(s) 53, 87
TscAI CASTG 2 cut(s) 55, 328
TseI GCWGC 2 cut(s) 270, 302
TspMI CCCGGG 1 cut(s) 228
TspRI CASTG 2 cut(s) 55, 328
XapI RAATTY 2 cut(s) 177, 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XmaI CCCGGG 1 cut(s) 228
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.