Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

69804615 .. 69811522

Gene Structure 6908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21827

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGATTAAGAACTTTGAAGAAACTCTAGCAACTAATAGGTTGGCTACAGAGAGTCTGAACACTAAATTGGGTGAGGTGCATCTTGAGTTAAAGTTGAAAGAGGACGAAATCAGACGTTTGATAACTGGTCAGGAGAACTTGGAAACAGAAAAGTATGATCTTCATATGAGCAACAATGACCTTGTTAAGAGATTAGATATGTCAGTCCTTGAGATAAAGAATCTTGAAGGTTTTGTTCATGTGTTGGCTGCACATTTGGCTGAATTGGACAGAGTTAGTTTGAACTTTCTAGAAAAGTTTGATAAGCTAAACTCTGTCTACGAGGCTTGCTTCCGGTTGGTCAATCAGGAGAGAGACCTTTCTGCCAAGCTTGCTAAGAGACAGTATGATCAACTGCACGGCAGGTTCTTGAACTTGACATCAGAAAAAGATGCTATACAATTGGTAAATCAGGAGTTGAACAATAAGGTCATGGAACTTCAGAAAGTTCAGGAGTCTATTATGGCACAACTTTCAGAGGAATGCCGTATAGCCAGGGAGAGGATACAGAAGTTGGAGTTTGAAGCTGAAGCTCTGGTCTCAAAGAAGATTGAAACAGAGAAGTTGGTGTCTGAATTAGAACTGCAAATTGATTCTCTGTCAGAAAGTTCAAGATCATCTGAGAATAAAAGGCAAATTCTGTTGCTGAAAATCTCAGCACTAGAAACTGAGAATAAAGATAATACAGAGAAACTACAAGCAGAGATACAGAAGAAAGCGGAACAAATAGATGGTTTACTGAAGCAAGGTGAAACACATGAGCAGCATGTAGATTTGATGGATAAACAAGTCAGCCAGCTTCATAGCACACTAGAGGAAAAGGAGCAACTTATTGTGCAATATAAGGAACGAGAGAAGAATCTGGAAGAACAGATCACAGAGAAGTATGAGGTGGAGAAGCTGGAGATAGTTAACATGGAAAAGCAAAAGGCAGAAAAACTTGTTCGAGAAAGGGCGATAGAATGTGAGAAAAAACTTGAAGAATGCAGAGAAGAATCTAGGCAGCACTTAATGCATGTTCAGGAGGAACATACTGGCGCTGGTATGTGTGGGAAAGTGGAGCATGATAAAAAGGAACGAAGTATAAAAGCTAAACACAGTGAAGAGCTAAAGCAGATCCAACTTCAAGCTGAAAACGAGTTGAGAGAGAAAATTACATCAATGAGGAATGAACATGAAGCCCAACTGAAAGCTTTGAGGCTTCAGCATGAAGATGAGATTAAGAAGCTTCAGGAGGACTTGGATGTTCAAAAGTCCAAAGAGGAGAAGCAGAGGGCATTACTGCAATTGCAGTGGAAAGTTATGAGTGATAAGCCAGAAGAGGAGCAAGAAGTGAATTCAAAGAAGGATTCACCTCTAGTGGGAGCAAAACAAACACCTGTGTCAACACTGTTGAAGAAAGCTTCAGAGAATATCAATTCACCAACTGTAATGAATATTTCAAAGCACCACAAAAAGGTAATTCGTGACGAATATGAAGTTGAAACTGGTAATGGAAGAACTATTAAACGGAAATTAAGAAGCACAGTCATGTTTGAGGGATCTAAGGGAGAGGGTCAACCACGTCCTTCAAACATCGTTGACCTGTTTTCTAAAGGGTCTCTGAATCCATATGCTGATGATCCATATGCATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

559

Amino Acids

65.02

Weight (kDa)

5.62

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	393
AccI	GTMKAC	1 cut(s)	318
AciI	CCGC	1 cut(s)	758
AclWI	GGATC	3 cut(s)	1150, 1588, 1655
AcsI	RAATTY	2 cut(s)	675, 1375
AcuI	CTGAAG	6 cut(s)	464, 588, 800, 1226, 1253, 1428
AfiI	CCNNNNNNNGG	3 cut(s)	540, 1400, 1495
AjiI	CACGTC	1 cut(s)	1604
AjnI	CCWGG	1 cut(s)	533
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
Alw26I	GTCTC	4 cut(s)	348, 373, 583, 1644
AlwI	GGATC	3 cut(s)	1150, 1588, 1655
ApeKI	GCWGC	3 cut(s)	248, 802, 1042
ApoI	RAATTY	2 cut(s)	675, 1375
AspLEI	GCGC	1 cut(s)	1079
AsuHPI	GGTGA	4 cut(s)	83, 800, 1383, 1452
BaeI	ACNNNNGTAYC	2 cut(s)	536, 569
BbvI	GCAGC	3 cut(s)	235, 814, 1054
BccI	CCATC	2 cut(s)	764, 811
BceAI	ACGGC	2 cut(s)	415, 510
BciT130I	CCWGG	1 cut(s)	535
BciVI	GTATCC	1 cut(s)	537
BclI	TGATCA	1 cut(s)	388
BcoDI	GTCTC	4 cut(s)	348, 373, 583, 1644
BfaI	CTAG	6 cut(s)	26, 290, 701, 851, 1038, 1397
BfmI	CTRYAG	1 cut(s)	45
BfoI	RGCGCY	1 cut(s)	1080
BfuAI	ACCTGC	1 cut(s)	393
BfuI	GTATCC	1 cut(s)	537
BisI	GCNGC	3 cut(s)	249, 803, 1043
BlsI	GCNGC	3 cut(s)	250, 804, 1044
Bme1390I	CCNGG	1 cut(s)	535
BmgBI	CACGTC	1 cut(s)	1604
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	2 cut(s)	88, 421
BpmI	CTGGAG	1 cut(s)	962
BpuEI	CTTGAG	2 cut(s)	104, 230
BsaI	GGTCTC	3 cut(s)	348, 583, 1644
BsaJI	CCNNGG	1 cut(s)	534
BsaWI	WCCGGW	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	3 cut(s)	540, 1400, 1495
Bse1I	ACTGG	3 cut(s)	130, 1078, 1531
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	1 cut(s)	534
BseGI	GGATG	1 cut(s)	1288
BseLI	CCNNNNNNNGG	3 cut(s)	540, 1400, 1495
BseMII	CTCAG	3 cut(s)	651, 699, 708
BseNI	ACTGG	3 cut(s)	130, 1078, 1531
BseRI	GAGGAG	2 cut(s)	1316, 1376
BseXI	GCAGC	3 cut(s)	235, 814, 1054
BsgI	GTGCAG	2 cut(s)	234, 380
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	3 cut(s)	540, 1400, 1495
BsmAI	GTCTC	4 cut(s)	348, 373, 583, 1644
BsmI	GAATGC	2 cut(s)	527, 1028
Bso31I	GGTCTC	3 cut(s)	348, 583, 1644
Bsp143I	GATC	7 cut(s)	157, 388, 653, 912, 1155, 1580, 1660
BspACI	CCGC	1 cut(s)	758
BspCNI	CTCAG	3 cut(s)	652, 700, 707
BspMI	ACCTGC	1 cut(s)	393
BspPI	GGATC	3 cut(s)	1150, 1588, 1655
BspQI	GCTCTTC	1 cut(s)	1137
BspTNI	GGTCTC	3 cut(s)	348, 583, 1644
BsrI	ACTGG	3 cut(s)	130, 1078, 1531
BssECI	CCNNGG	1 cut(s)	534
BssMI	GATC	7 cut(s)	157, 388, 653, 912, 1155, 1580, 1660
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	5 cut(s)	384, 1139, 1431, 1468, 1567
Bst6I	CTCTTC	2 cut(s)	1137, 1353
BstAPI	GCANNNNNTGC	1 cut(s)	1051
BstC8I	GCNNGC	3 cut(s)	328, 372, 836
BstDEI	CTNAG	5 cut(s)	375, 660, 694, 708, 1584
BstF5I	GGATG	1 cut(s)	1288
BstH2I	RGCGCY	1 cut(s)	1080
BstHHI	GCGC	1 cut(s)	1079
BstKTI	GATC	7 cut(s)	160, 391, 656, 915, 1158, 1583, 1663
BstMAI	GTCTC	4 cut(s)	348, 373, 583, 1644
BstMBI	GATC	7 cut(s)	157, 388, 653, 912, 1155, 1580, 1660
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 371, 1051
BstNI	CCWGG	1 cut(s)	535
BstNSI	RCATGY	2 cut(s)	809, 1058
BstSCI	CCNGG	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	235, 814, 1054
BstX2I	RGATCY	2 cut(s)	1155, 1580
BstYI	RGATCY	2 cut(s)	1155, 1580
BsuI	GTATCC	1 cut(s)	537
BtrI	CACGTC	1 cut(s)	1604
BtsCI	GGATG	1 cut(s)	1288
BtsI	GCAGTG	1 cut(s)	1337
BtsIMutI	CAGTG	3 cut(s)	1144, 1337, 1427
BveI	ACCTGC	1 cut(s)	393
Cac8I	GCNNGC	3 cut(s)	328, 372, 836
CfoI	GCGC	1 cut(s)	1079
CspCI	CAANNNNNGTGG	2 cut(s)	1313, 1348
DdeI	CTNAG	5 cut(s)	375, 660, 694, 708, 1584
DpnI	GATC	7 cut(s)	159, 390, 655, 914, 1157, 1582, 1662
DpnII	GATC	7 cut(s)	157, 388, 653, 912, 1155, 1580, 1660
Eam1104I	CTCTTC	2 cut(s)	1137, 1353
EarI	CTCTTC	2 cut(s)	1137, 1353
Eco31I	GGTCTC	3 cut(s)	348, 583, 1644
Eco57I	CTGAAG	6 cut(s)	464, 588, 800, 1226, 1253, 1428
EcoRI	GAATTC	1 cut(s)	1375
EcoRII	CCWGG	1 cut(s)	533
EcoT22I	ATGCAT	2 cut(s)	1056, 1672
FauNDI	CATATG	3 cut(s)	165, 1651, 1666
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	249, 803, 1043
FokI	GGATG	1 cut(s)	1295
Fsp4HI	GCNGC	3 cut(s)	249, 803, 1043
FspBI	CTAG	6 cut(s)	26, 290, 701, 851, 1038, 1397
GlaI	GCGC	1 cut(s)	1078
GluI	GCNGC	3 cut(s)	249, 803, 1043
GsuI	CTGGAG	1 cut(s)	962
HaeII	RGCGCY	1 cut(s)	1080
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	1 cut(s)	1079
Hin6I	GCGC	1 cut(s)	1077
HinP1I	GCGC	1 cut(s)	1077
HincII	GTYRAC	4 cut(s)	952, 1425, 1598, 1621
HindII	GTYRAC	4 cut(s)	952, 1425, 1598, 1621
HindIII	AAGCTT	4 cut(s)	368, 1230, 1265, 1440
HinfI	GANTC	8 cut(s)	52, 220, 494, 632, 898, 1034, 1388, 1645
HpaI	GTTAAC	1 cut(s)	952
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	4 cut(s)	83, 800, 1383, 1452
Hpy166II	GTNNAC	6 cut(s)	319, 776, 952, 1425, 1598, 1621
Hpy8I	GTNNAC	6 cut(s)	319, 776, 952, 1425, 1598, 1621
HpyAV	CCTTC	3 cut(s)	221, 1378, 1617
HpyCH4III	ACNGT	5 cut(s)	384, 1139, 1431, 1468, 1567
HpyCH4IV	ACGT	2 cut(s)	115, 1603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 371, 1051
HpyF3I	CTNAG	5 cut(s)	375, 660, 694, 708, 1584
HpySE526I	ACGT	2 cut(s)	115, 1603
HspAI	GCGC	1 cut(s)	1077
Ksp22I	TGATCA	1 cut(s)	388
KspAI	GTTAAC	1 cut(s)	952
Kzo9I	GATC	7 cut(s)	157, 388, 653, 912, 1155, 1580, 1660
LguI	GCTCTTC	1 cut(s)	1137
LmnI	GCTCC	4 cut(s)	862, 1099, 1363, 1403
Lsp1109I	GCAGC	3 cut(s)	235, 814, 1054
LweI	GCATC	2 cut(s)	88, 421
MaeI	CTAG	6 cut(s)	26, 290, 701, 851, 1038, 1397
MaeII	ACGT	2 cut(s)	115, 1603
MaeIII	GTNAC	1 cut(s)	1505
MalI	GATC	7 cut(s)	159, 390, 655, 914, 1157, 1582, 1662
MboI	GATC	7 cut(s)	157, 388, 653, 912, 1155, 1580, 1660
MfeI	CAATTG	2 cut(s)	440, 1325
MflI	RGATCY	2 cut(s)	1155, 1580
MlyI	GAGTC	2 cut(s)	61, 503
MmeI	TCCRAC	2 cut(s)	534, 1183
Mph1103I	ATGCAT	2 cut(s)	1056, 1672
MseI	TTAA	9 cut(s)	6, 89, 186, 951, 1049, 1260, 1545, 1556, 1678
MslI	CAYNNNNRTG	2 cut(s)	1251, 1568
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	535
MunI	CAATTG	2 cut(s)	440, 1325
Mva1269I	GAATGC	2 cut(s)	527, 1028
MvaI	CCWGG	1 cut(s)	535
MwoI	GCNNNNNNNGC	3 cut(s)	257, 371, 1051
NdeI	CATATG	3 cut(s)	165, 1651, 1666
NdeII	GATC	7 cut(s)	157, 388, 653, 912, 1155, 1580, 1660
NmuCI	GTSAC	1 cut(s)	1505
NsiI	ATGCAT	2 cut(s)	1056, 1672
NspI	RCATGY	2 cut(s)	809, 1058
PciSI	GCTCTTC	1 cut(s)	1137
PctI	GAATGC	2 cut(s)	527, 1028
PfeI	GAWTC	6 cut(s)	220, 632, 898, 1034, 1388, 1645
PkrI	GCNGC	3 cut(s)	250, 804, 1044
PleI	GAGTC	2 cut(s)	60, 502
PpsI	GAGTC	2 cut(s)	60, 502
Psp6I	CCWGG	1 cut(s)	533
PspGI	CCWGG	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	1155, 1580
RseI	CAYNNNNRTG	2 cut(s)	1251, 1568
SapI	GCTCTTC	1 cut(s)	1137
SaqAI	TTAA	9 cut(s)	6, 89, 186, 951, 1049, 1260, 1545, 1556, 1678
SatI	GCNGC	3 cut(s)	249, 803, 1043
Sau3AI	GATC	7 cut(s)	157, 388, 653, 912, 1155, 1580, 1660
SchI	GAGTC	2 cut(s)	61, 503
ScrFI	CCNGG	1 cut(s)	535
SfaNI	GCATC	2 cut(s)	88, 421
SfcI	CTRYAG	1 cut(s)	45
SmiMI	CAYNNNNRTG	2 cut(s)	1251, 1568
SmlI	CTYRAG	2 cut(s)	83, 209
SmoI	CTYRAG	2 cut(s)	83, 209
SsiI	CCGC	1 cut(s)	758
SspI	AATATT	1 cut(s)	1477
SspMI	CTAG	6 cut(s)	26, 290, 701, 851, 1038, 1397
StyD4I	CCNGG	1 cut(s)	533
TaaI	ACNGT	5 cut(s)	384, 1139, 1431, 1468, 1567
TaiI	ACGT	2 cut(s)	118, 1606
TaqI	TCGA	1 cut(s)	985
TfiI	GAWTC	6 cut(s)	220, 632, 898, 1034, 1388, 1645
Tru1I	TTAA	9 cut(s)	6, 89, 186, 951, 1049, 1260, 1545, 1556, 1678
Tru9I	TTAA	9 cut(s)	6, 89, 186, 951, 1049, 1260, 1545, 1556, 1678
TscAI	CASTG	3 cut(s)	1144, 1337, 1434
TseFI	GTSAC	1 cut(s)	1505
TseI	GCWGC	3 cut(s)	248, 802, 1042
Tsp45I	GTSAC	1 cut(s)	1505
TspDTI	ATGAA	8 cut(s)	152, 227, 830, 1224, 1230, 1263, 1487, 1530
TspGWI	ACGGA	1 cut(s)	1564
TspRI	CASTG	3 cut(s)	1144, 1337, 1434
XapI	RAATTY	2 cut(s)	675, 1375
XbaI	TCTAGA	1 cut(s)	289
XceI	RCATGY	2 cut(s)	809, 1058
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	6 cut(s)	26, 290, 701, 851, 1038, 1397
Zsp2I	ATGCAT	2 cut(s)	1056, 1672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.