Rmu_sc0004062.1_g000012

Synaptonemal complex protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004062.1
Physical Location & Seq
Forward (+)
54251 .. 60590
6340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004062.1_g000012.1.cds

Sequence Viewer

Length: 1686 bp
atgtgggttcttcttcttctcgaagacctgatatgggttcctcttcttctccaagacctgaagtggattcagtctcaacgtgaggatgatgaagttccccccgagcacgagttcaatttcaaatgtctcaacgtgaggatgggcaccacacaatcaattacaccagtcttcagctgcagaatcgaccctacagctcgtgtgcccaagaaggacgatgaagttccccccgagcacgagttcaatttcaaatgggatctaaggaagagggtcaaccacgtccttcaaacattggtgaccggttttcagaaggatgctatgattaagaactttgaagaaactctagcaactaataggttggctacagagagtctgaacactaaattgggtgaggtgcatcttgagttaaagttgaaactggacgaaatcagacgtttgataactggtcaggagaacttggaaacagaaaagtatgatcttcatatgagcaacaacgaccttgttaagagattagatatggcagtccttgagataaagaatcttgaaggttttgttcatgtgttggctgcacatttggctgaattggacagacagagtttgaactttctagaaaagtttgataagctaaactcgctctacgaggcttgcttccagttggtcaatcaggagagagtcctttctgccaagcttgctaagagacagtatgatcaactgcacgacaggttcttgaacttgacatcagaaaaagatgctatacaattggtaaatcaggagttgaacaataaggtcatggaacttcagaaagttcaggagtctattatggcacaactttcagaggaatgccgtatagccagggagaggatacagaagttggagtttgaagctgaagctctggtctcaaagaagattgaaacagagaagttggtgtctgaattagaactgcaaattgattctctgtcagaaagttcaagatcatctgagaataaaaggcaaattctgttgctgaaaatctcagcactagaaactgagaataaagataatacagagaaactacaagcagagatacagaagaaagcggaacaaatagatggtttactgaagcaaggtgaaacacatgagcagcatgtagatttgatggataaacaagtcagccagcttcatagcacactagaggaaaaggagcaacttattgtgcaatataaggaacgagagaagaatctggaagaacagatcacagaggcagaaaaacttgttctagaaagggcgatagaatgtgagaaaaaacttgaagaatgcagagaagaatctaggcagcacttaatgcatgttcaggaggaacatactgcgctggtcagtagtcttcagcaggagcatgataaaaaggaacgaagtataaaagctaaacacagtgaagagctaaagcagatccaacttcaagctgaaaacgagttgagagagaaaattacatcaatgaggaatgaacatgaagcccaactgaaagctttgaggcttcagcatgaagatgagattaagaagcttcaggaggacttggatctccaaaagtccaaagtacttatcttcctatgttctttcggaatttatttttttgtacatcttttacatattcttattatcacaggaggagaagcagagggcattactgcaattgctgtggaaagttatgagtga

Protein Analysis

561

Amino Acids

65.65

Weight (kDa)

5.24

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 1 cut(s) 1073
AclWI GGATC 3 cut(s) 261, 1417, 1557
AcsI RAATTY 2 cut(s) 990, 1593
AcuI CTGAAG 8 cut(s) 80, 154, 779, 903, 1115, 1343, 1493, 1520
AfaI GTAC 2 cut(s) 1569, 1608
AfiI CCNNNNNNNGG 2 cut(s) 34, 855
AgeI ACCGGT 1 cut(s) 296
AjiI CACGTC 1 cut(s) 277
AjnI CCWGG 1 cut(s) 848
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
Alw21I GWGCWC 2 cut(s) 108, 234
Alw26I GTCTC 4 cut(s) 78, 131, 688, 898
AlwI GGATC 3 cut(s) 261, 1417, 1557
Ama87I CYCGRG 2 cut(s) 101, 227
ApeKI GCWGC 4 cut(s) 174, 563, 1117, 1309
ApoI RAATTY 2 cut(s) 990, 1593
AsiGI ACCGGT 1 cut(s) 296
AspLEI GCGC 1 cut(s) 1345
AsuHPI GGTGA 3 cut(s) 304, 398, 1115
AvaI CYCGRG 2 cut(s) 101, 227
BaeGI GKGCMC 2 cut(s) 146, 204
BaeI ACNNNNGTAYC 2 cut(s) 851, 884
BanI GGYRCC 1 cut(s) 143
BauI CACGAG 3 cut(s) 107, 195, 233
BbsI GAAGAC 3 cut(s) 30, 160, 1349
Bbv12I GWGCWC 2 cut(s) 108, 234
BbvI GCAGC 4 cut(s) 161, 550, 1129, 1321
BccI CCATC 3 cut(s) 133, 1079, 1126
BceAI ACGGC 1 cut(s) 825
BciT130I CCWGG 1 cut(s) 850
BciVI GTATCC 1 cut(s) 852
BclI TGATCA 1 cut(s) 703
BcoDI GTCTC 4 cut(s) 78, 131, 688, 898
BfaI CTAG 6 cut(s) 341, 605, 1016, 1166, 1253, 1305
BfmI CTRYAG 3 cut(s) 175, 189, 360
BfuI GTATCC 1 cut(s) 852
BisI GCNGC 4 cut(s) 175, 564, 1118, 1310
BlsI GCNGC 4 cut(s) 176, 565, 1119, 1311
BmcAI AGTACT 1 cut(s) 1569
Bme1390I CCNGG 1 cut(s) 850
BmeT110I CYCGRG 2 cut(s) 101, 227
BmgBI CACGTC 1 cut(s) 277
BmiI GGNNCC 2 cut(s) 39, 145
BmrFI CCNGG 1 cut(s) 850
BmsI GCATC 3 cut(s) 301, 403, 736
BpiI GAAGAC 3 cut(s) 30, 160, 1349
BpuEI CTTGAG 2 cut(s) 419, 545
BsaI GGTCTC 1 cut(s) 898
BsaJI CCNNGG 1 cut(s) 849
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 855
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 4 cut(s) 164, 420, 445, 649
BseBI CCWGG 1 cut(s) 850
BseDI CCNNGG 1 cut(s) 849
BseGI GGATG 3 cut(s) 91, 144, 316
BseLI CCNNNNNNNGG 2 cut(s) 34, 855
BseMII CTCAG 3 cut(s) 966, 1014, 1023
BseNI ACTGG 4 cut(s) 164, 420, 445, 649
BseRI GAGGAG 1 cut(s) 1653
BseSI GKGCMC 2 cut(s) 146, 204
BseXI GCAGC 4 cut(s) 161, 550, 1129, 1321
BsgI GTGCAG 2 cut(s) 549, 695
BshNI GGYRCC 1 cut(s) 143
BshTI ACCGGT 1 cut(s) 296
BsiHKAI GWGCWC 2 cut(s) 108, 234
BsiHKCI CYCGRG 2 cut(s) 101, 227
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 34, 855
BsmAI GTCTC 4 cut(s) 78, 131, 688, 898
BsmI GAATGC 2 cut(s) 842, 1295
Bso31I GGTCTC 1 cut(s) 898
BsoBI CYCGRG 2 cut(s) 101, 227
Bsp1286I GDGCHC 4 cut(s) 108, 146, 204, 234
Bsp1407I TGTACA 1 cut(s) 1606
Bsp143I GATC 7 cut(s) 253, 472, 703, 968, 1227, 1422, 1549
BspACI CCGC 1 cut(s) 1073
BspCNI CTCAG 3 cut(s) 967, 1015, 1022
BspLI GGNNCC 2 cut(s) 39, 145
BspMAI CTGCAG 1 cut(s) 179
BspPI GGATC 3 cut(s) 261, 1417, 1557
BspQI GCTCTTC 1 cut(s) 1404
BspT107I GGYRCC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 898
BsrFI RCCGGY 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 1606
BsrI ACTGG 4 cut(s) 164, 420, 445, 649
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 849
BssMI GATC 7 cut(s) 253, 472, 703, 968, 1227, 1422, 1549
BssSI CACGAG 3 cut(s) 107, 195, 233
Bst2BI CACGAG 3 cut(s) 107, 195, 233
Bst2UI CCWGG 1 cut(s) 850
Bst4CI ACNGT 2 cut(s) 699, 1406
Bst6I CTCTTC 3 cut(s) 48, 257, 1404
BstAPI GCANNNNNTGC 1 cut(s) 1318
BstAUI TGTACA 1 cut(s) 1606
BstC8I GCNNGC 3 cut(s) 643, 687, 1151
BstDEI CTNAG 5 cut(s) 257, 690, 975, 1009, 1023
BstEII GGTNACC 1 cut(s) 292
BstF5I GGATG 3 cut(s) 91, 144, 316
BstHHI GCGC 1 cut(s) 1345
BstKTI GATC 7 cut(s) 256, 475, 706, 971, 1230, 1425, 1552
BstMAI GTCTC 4 cut(s) 78, 131, 688, 898
BstMBI GATC 7 cut(s) 253, 472, 703, 968, 1227, 1422, 1549
BstMWI GCNNNNNNNGC 4 cut(s) 572, 628, 686, 1318
BstNI CCWGG 1 cut(s) 850
BstNSI RCATGY 2 cut(s) 1124, 1325
BstPI GGTNACC 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 848
BstSFI CTRYAG 3 cut(s) 175, 189, 360
BstSLI GKGCMC 2 cut(s) 146, 204
BstV1I GCAGC 4 cut(s) 161, 550, 1129, 1321
BstV2I GAAGAC 3 cut(s) 30, 160, 1349
BstX2I RGATCY 3 cut(s) 253, 1422, 1549
BstYI RGATCY 3 cut(s) 253, 1422, 1549
BsuI GTATCC 1 cut(s) 852
BtrI CACGTC 1 cut(s) 277
BtsCI GGATG 3 cut(s) 91, 144, 316
BtsIMutI CAGTG 1 cut(s) 1411
Cac8I GCNNGC 3 cut(s) 643, 687, 1151
CfoI GCGC 1 cut(s) 1345
Cfr10I RCCGGY 1 cut(s) 296
Csp6I GTAC 2 cut(s) 1568, 1607
CspAI ACCGGT 1 cut(s) 296
CspCI CAANNNNNGTGG 2 cut(s) 1650, 1685
CviAII CATG 8 cut(s) 554, 787, 1112, 1121, 1322, 1370, 1481, 1514
CviQI GTAC 2 cut(s) 1568, 1607
DdeI CTNAG 5 cut(s) 257, 690, 975, 1009, 1023
DpnI GATC 7 cut(s) 255, 474, 705, 970, 1229, 1424, 1551
DpnII GATC 7 cut(s) 253, 472, 703, 968, 1227, 1422, 1549
Eam1104I CTCTTC 3 cut(s) 48, 257, 1404
EarI CTCTTC 3 cut(s) 48, 257, 1404
Eco31I GGTCTC 1 cut(s) 898
Eco57I CTGAAG 8 cut(s) 80, 154, 779, 903, 1115, 1343, 1493, 1520
Eco88I CYCGRG 2 cut(s) 101, 227
Eco91I GGTNACC 1 cut(s) 292
EcoO65I GGTNACC 1 cut(s) 292
EcoRII CCWGG 1 cut(s) 848
EcoT22I ATGCAT 1 cut(s) 1323
FaeI CATG 8 cut(s) 557, 790, 1115, 1124, 1325, 1373, 1484, 1517
FatI CATG 8 cut(s) 553, 786, 1111, 1120, 1321, 1369, 1480, 1513
FauNDI CATATG 1 cut(s) 480
FbaI TGATCA 1 cut(s) 703
Fnu4HI GCNGC 4 cut(s) 175, 564, 1118, 1310
FokI GGATG 3 cut(s) 98, 151, 323
Fsp4HI GCNGC 4 cut(s) 175, 564, 1118, 1310
FspBI CTAG 6 cut(s) 341, 605, 1016, 1166, 1253, 1305
GlaI GCGC 1 cut(s) 1344
GluI GCNGC 4 cut(s) 175, 564, 1118, 1310
HapII CCGG 1 cut(s) 297
HhaI GCGC 1 cut(s) 1345
Hin1II CATG 8 cut(s) 557, 790, 1115, 1124, 1325, 1373, 1484, 1517
Hin6I GCGC 1 cut(s) 1343
HinP1I GCGC 1 cut(s) 1343
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 3 cut(s) 683, 1497, 1532
HinfI GANTC 9 cut(s) 67, 180, 367, 535, 669, 809, 947, 1213, 1301
HpaII CCGG 1 cut(s) 297
HphI GGTGA 3 cut(s) 304, 398, 1115
Hpy166II GTNNAC 2 cut(s) 271, 1091
Hpy8I GTNNAC 2 cut(s) 271, 1091
HpyAV CCTTC 4 cut(s) 202, 290, 301, 536
HpyCH4III ACNGT 2 cut(s) 699, 1406
HpyCH4IV ACGT 4 cut(s) 79, 132, 276, 430
HpyCH4V TGCA 9 cut(s) 177, 394, 566, 712, 940, 1192, 1293, 1321, 1661
HpyF10VI GCNNNNNNNGC 4 cut(s) 572, 628, 686, 1318
HpyF3I CTNAG 5 cut(s) 257, 690, 975, 1009, 1023
HpySE526I ACGT 4 cut(s) 79, 132, 276, 430
Hsp92II CATG 8 cut(s) 557, 790, 1115, 1124, 1325, 1373, 1484, 1517
HspAI GCGC 1 cut(s) 1343
Ksp22I TGATCA 1 cut(s) 703
Kzo9I GATC 7 cut(s) 253, 472, 703, 968, 1227, 1422, 1549
LguI GCTCTTC 1 cut(s) 1404
LmnI GCTCC 2 cut(s) 1177, 1366
Lsp1109I GCAGC 4 cut(s) 161, 550, 1129, 1321
LweI GCATC 3 cut(s) 301, 403, 736
MaeI CTAG 6 cut(s) 341, 605, 1016, 1166, 1253, 1305
MaeII ACGT 4 cut(s) 79, 132, 276, 430
MaeIII GTNAC 1 cut(s) 292
MalI GATC 7 cut(s) 255, 474, 705, 970, 1229, 1424, 1551
MboI GATC 7 cut(s) 253, 472, 703, 968, 1227, 1422, 1549
MfeI CAATTG 2 cut(s) 755, 1662
MflI RGATCY 3 cut(s) 253, 1422, 1549
MhlI GDGCHC 4 cut(s) 108, 146, 204, 234
MlyI GAGTC 3 cut(s) 376, 678, 818
MmeI TCCRAC 2 cut(s) 849, 1450
Mph1103I ATGCAT 1 cut(s) 1323
MseI TTAA 5 cut(s) 321, 404, 501, 1316, 1527
MslI CAYNNNNRTG 1 cut(s) 1518
MspA1I CMGCKG 1 cut(s) 174
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 1 cut(s) 850
MunI CAATTG 2 cut(s) 755, 1662
Mva1269I GAATGC 2 cut(s) 842, 1295
MvaI CCWGG 1 cut(s) 850
MwoI GCNNNNNNNGC 4 cut(s) 572, 628, 686, 1318
NdeI CATATG 1 cut(s) 480
NdeII GATC 7 cut(s) 253, 472, 703, 968, 1227, 1422, 1549
NlaIII CATG 8 cut(s) 557, 790, 1115, 1124, 1325, 1373, 1484, 1517
NlaIV GGNNCC 2 cut(s) 39, 145
NmuCI GTSAC 1 cut(s) 292
NsiI ATGCAT 1 cut(s) 1323
NspI RCATGY 2 cut(s) 1124, 1325
PciSI GCTCTTC 1 cut(s) 1404
PctI GAATGC 2 cut(s) 842, 1295
PfeI GAWTC 6 cut(s) 67, 180, 535, 947, 1213, 1301
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 4 cut(s) 176, 565, 1119, 1311
PleI GAGTC 3 cut(s) 375, 677, 817
PpsI GAGTC 3 cut(s) 375, 677, 817
Psp6I CCWGG 1 cut(s) 848
PspEI GGTNACC 1 cut(s) 292
PspGI CCWGG 1 cut(s) 848
PspN4I GGNNCC 2 cut(s) 39, 145
PstI CTGCAG 1 cut(s) 179
PsuI RGATCY 3 cut(s) 253, 1422, 1549
PvuII CAGCTG 1 cut(s) 174
RsaI GTAC 2 cut(s) 1569, 1608
RsaNI GTAC 2 cut(s) 1568, 1607
RseI CAYNNNNRTG 1 cut(s) 1518
SapI GCTCTTC 1 cut(s) 1404
SaqAI TTAA 5 cut(s) 321, 404, 501, 1316, 1527
SatI GCNGC 4 cut(s) 175, 564, 1118, 1310
Sau3AI GATC 7 cut(s) 253, 472, 703, 968, 1227, 1422, 1549
ScaI AGTACT 1 cut(s) 1569
SchI GAGTC 3 cut(s) 376, 678, 818
ScrFI CCNGG 1 cut(s) 850
SduI GDGCHC 4 cut(s) 108, 146, 204, 234
SfaNI GCATC 3 cut(s) 301, 403, 736
SfcI CTRYAG 3 cut(s) 175, 189, 360
SmiMI CAYNNNNRTG 1 cut(s) 1518
SmlI CTYRAG 2 cut(s) 398, 524
SmoI CTYRAG 2 cut(s) 398, 524
SsiI CCGC 1 cut(s) 1073
SspMI CTAG 6 cut(s) 341, 605, 1016, 1166, 1253, 1305
StyD4I CCNGG 1 cut(s) 848
TaaI ACNGT 2 cut(s) 699, 1406
TaiI ACGT 4 cut(s) 82, 135, 279, 433
TaqI TCGA 2 cut(s) 21, 183
TatI WGTACW 2 cut(s) 1567, 1606
TfiI GAWTC 6 cut(s) 67, 180, 535, 947, 1213, 1301
Tru1I TTAA 5 cut(s) 321, 404, 501, 1316, 1527
Tru9I TTAA 5 cut(s) 321, 404, 501, 1316, 1527
TscAI CASTG 1 cut(s) 1411
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 4 cut(s) 174, 563, 1117, 1309
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 8 cut(s) 105, 231, 467, 542, 1145, 1491, 1497, 1530
TspRI CASTG 1 cut(s) 1411
XapI RAATTY 2 cut(s) 990, 1593
XbaI TCTAGA 2 cut(s) 604, 1252
XceI RCATGY 2 cut(s) 1124, 1325
XspI CTAG 6 cut(s) 341, 605, 1016, 1166, 1253, 1305
ZrmI AGTACT 1 cut(s) 1569
Zsp2I ATGCAT 1 cut(s) 1323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.