Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

28965484 .. 28967574

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39261.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGATAAACAAGTCAGCCAGCTTCATAGCACACTAGAGGAAAAGGAGCAACTTATTGCCCAATACAAGGAACGAGAGATGAATCTGGAAAAACAGATCACAGAGAATTGTGCATCTTTGACTGCTGCTGAAACTAAACTCGTGGAAGATAAGAATCAATATGATGTCATGCTTGAGAGTAAACAACTAGAACTGCCAAGGCATTTGAAAGACATATCACCGAGCAATGATCAGGCTATCAATGACATCCGGAAGAAATACAAGGTGGAGAAGCTAGAGATAGTTAACATGGAAAAGCAAAAGGCAGAAAATCTTGTTCGAGAAAGGGAGATAGAATGTGAGAAAAAACTTGAAAAATGCAAAGAAGAAACTAGGCAGCACTTGATGCGTGTTCAGGAGGAACATGCTGTTCTGGAGTACTCAATTTCATCGAGGAGAAACCCTGTTGCTAGAAGGAGAGGTCAGCGGTCTCTGAGAAGACCGGAGCATGATGAGAAGTCCAATTCCAAAGGCACGACGATTTTTGGTTTTCGGTACAATAATGGGGTAGTGCTCGGAGGAGATGGCAGGATATATGACTATGACTATTACTATGACAACAACAACAACAAAGTGTCTACCTACTTCCTTGTTCAAGACGATAAGAAGAAGACCTTCGAGTTATTAAACACCAACAACTCAAGAATTTGCTGTGCCTGTATGGGATTGGTAGATTACTGGGAAGATTTACATCGTTATCTTAAAAAACAGAACCCACAGTCAGTATCTACAGCAACAAAAGTAGCAGCCCAATATATGACAAACTTTGTCACAGAGAAGACAAAAGTTATAGAGGACTATAGAAACAAACATAACGAAGAGCTGTCCTTCGGTATCATCCTGGGGGGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

298

Amino Acids

34.94

Weight (kDa)

7.59

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	617
AccIII	TCCGGA	1 cut(s)	249
AciI	CCGC	1 cut(s)	466
AcsI	RAATTY	1 cut(s)	684
AfaI	GTAC	2 cut(s)	419, 536
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	208, 353, 635
AjnI	CCWGG	1 cut(s)	879
AluBI	AGCT	3 cut(s)	22, 274, 862
AluI	AGCT	3 cut(s)	22, 274, 862
Alw21I	GWGCWC	1 cut(s)	555
Alw26I	GTCTC	1 cut(s)	474
Aor13HI	TCCGGA	1 cut(s)	249
ApeKI	GCWGC	3 cut(s)	125, 376, 785
ApoI	RAATTY	1 cut(s)	684
Asp700I	GAANNNNTTC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	210
BauI	CACGAG	1 cut(s)	140
BbsI	GAAGAC	3 cut(s)	484, 656, 824
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	112, 388, 797
BccI	CCATC	1 cut(s)	557
BciT130I	CCWGG	1 cut(s)	881
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	474
BfaI	CTAG	5 cut(s)	35, 188, 275, 372, 450
BfmI	CTRYAG	2 cut(s)	768, 838
BisI	GCNGC	3 cut(s)	126, 377, 786
BlsI	GCNGC	3 cut(s)	127, 378, 787
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	881
BmrFI	CCNGG	1 cut(s)	881
BmrI	ACTGGG	1 cut(s)	727
BmsI	GCATC	2 cut(s)	122, 375
BmuI	ACTGGG	1 cut(s)	727
BpiI	GAAGAC	3 cut(s)	484, 656, 824
BpmI	CTGGAG	1 cut(s)	434
BpuEI	CTTGAG	2 cut(s)	194, 664
BsaBI	GATNNNNATC	2 cut(s)	153, 729
BsaI	GGTCTC	1 cut(s)	474
BsaJI	CCNNGG	2 cut(s)	197, 880
BsaWI	WCCGGW	2 cut(s)	249, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	722
Bse3DI	GCAATG	1 cut(s)	232
Bse8I	GATNNNNATC	2 cut(s)	153, 729
BseAI	TCCGGA	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	881
BseDI	CCNNGG	2 cut(s)	197, 880
BseGI	GGATG	2 cut(s)	246, 876
BseJI	GATNNNNATC	2 cut(s)	153, 729
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	2 cut(s)	448, 573
BseXI	GCAGC	3 cut(s)	112, 388, 797
BsiHKAI	GWGCWC	1 cut(s)	555
BsiSI	CCGG	2 cut(s)	250, 482
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	474
Bso31I	GGTCTC	1 cut(s)	474
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	96, 229
BspACI	CCGC	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	465
BspEI	TCCGGA	1 cut(s)	249
BspQI	GCTCTTC	1 cut(s)	852
BspTNI	GGTCTC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	722
BssECI	CCNNGG	2 cut(s)	197, 880
BssMI	GATC	2 cut(s)	96, 229
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	881
Bst4CI	ACNGT	1 cut(s)	759
Bst6I	CTCTTC	1 cut(s)	852
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstC8I	GCNNGC	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	473
BstF5I	GGATG	2 cut(s)	246, 876
BstKTI	GATC	2 cut(s)	99, 232
BstMAI	GTCTC	1 cut(s)	474
BstMBI	GATC	2 cut(s)	96, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNI	CCWGG	1 cut(s)	881
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	879
BstSFI	CTRYAG	2 cut(s)	768, 838
BstV1I	GCAGC	3 cut(s)	112, 388, 797
BstV2I	GAAGAC	3 cut(s)	484, 656, 824
BtsCI	GGATG	2 cut(s)	246, 876
Cac8I	GCNNGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	418, 535
CviAII	CATG	4 cut(s)	169, 289, 404, 488
CviJI	RGCY	7 cut(s)	18, 22, 236, 274, 788, 862, 889
CviKI_1	RGCY	7 cut(s)	18, 22, 236, 274, 788, 862, 889
CviQI	GTAC	2 cut(s)	418, 535
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	2 cut(s)	98, 231
DpnII	GATC	2 cut(s)	96, 229
Eam1104I	CTCTTC	1 cut(s)	852
EarI	CTCTTC	1 cut(s)	852
Eco130I	CCWWGG	1 cut(s)	197
Eco31I	GGTCTC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	879
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	4 cut(s)	172, 292, 407, 491
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FatI	CATG	4 cut(s)	168, 288, 403, 487
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	617
Fnu4HI	GCNGC	3 cut(s)	126, 377, 786
FokI	GGATG	2 cut(s)	233, 863
Fsp4HI	GCNGC	3 cut(s)	126, 377, 786
FspBI	CTAG	5 cut(s)	35, 188, 275, 372, 450
GluI	GCNGC	3 cut(s)	126, 377, 786
GsuI	CTGGAG	1 cut(s)	434
HapII	CCGG	2 cut(s)	250, 482
Hin1II	CATG	4 cut(s)	172, 292, 407, 491
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	82, 154
HpaI	GTTAAC	1 cut(s)	286
HpaII	CCGG	2 cut(s)	250, 482
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	3 cut(s)	182, 286, 618
Hpy188I	TCNGA	2 cut(s)	474, 557
Hpy188III	TCNNGA	7 cut(s)	86, 250, 320, 395, 413, 635, 681
Hpy8I	GTNNAC	3 cut(s)	182, 286, 618
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	3 cut(s)	447, 664, 877
HpyCH4III	ACNGT	1 cut(s)	759
HpyCH4V	TGCA	2 cut(s)	113, 360
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpyF3I	CTNAG	1 cut(s)	473
Hsp92II	CATG	4 cut(s)	172, 292, 407, 491
Kpn2I	TCCGGA	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	229
KspAI	GTTAAC	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	96, 229
LguI	GCTCTTC	1 cut(s)	852
LmnI	GCTCC	2 cut(s)	46, 484
Lsp1109I	GCAGC	3 cut(s)	112, 388, 797
LweI	GCATC	2 cut(s)	122, 375
MaeI	CTAG	5 cut(s)	35, 188, 275, 372, 450
MaeIII	GTNAC	1 cut(s)	808
MalI	GATC	2 cut(s)	98, 231
MboI	GATC	2 cut(s)	96, 229
MboII	GAAGA	9 cut(s)	158, 265, 377, 489, 658, 661, 734, 829, 869
MhlI	GDGCHC	1 cut(s)	555
MluCI	AATT	4 cut(s)	106, 423, 502, 684
MnlI	CCTC	6 cut(s)	31, 391, 426, 452, 551, 826
MroI	TCCGGA	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	653
MseI	TTAA	3 cut(s)	285, 665, 741
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	2 cut(s)	250, 482
MspR9I	CCNGG	1 cut(s)	881
MvaI	CCWGG	1 cut(s)	881
MwoI	GCNNNNNNNGC	1 cut(s)	385
NdeII	GATC	2 cut(s)	96, 229
NlaIII	CATG	4 cut(s)	172, 292, 407, 491
NmuCI	GTSAC	1 cut(s)	808
NspI	RCATGY	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	82, 154
PkrI	GCNGC	3 cut(s)	127, 378, 787
Psp6I	CCWGG	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	879
RsaI	GTAC	2 cut(s)	419, 536
RsaNI	GTAC	2 cut(s)	418, 535
SapI	GCTCTTC	1 cut(s)	852
SaqAI	TTAA	3 cut(s)	285, 665, 741
SatI	GCNGC	3 cut(s)	126, 377, 786
Sau3AI	GATC	2 cut(s)	96, 229
ScaI	AGTACT	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	881
SduI	GDGCHC	1 cut(s)	555
SetI	ASST	7 cut(s)	24, 267, 276, 463, 623, 656, 864
SfaNI	GCATC	2 cut(s)	122, 375
SfcI	CTRYAG	2 cut(s)	768, 838
SmlI	CTYRAG	2 cut(s)	173, 679
SmoI	CTYRAG	2 cut(s)	173, 679
Sse9I	AATT	4 cut(s)	106, 423, 502, 684
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	5 cut(s)	35, 188, 275, 372, 450
StyD4I	CCNGG	1 cut(s)	879
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	759
TaqI	TCGA	3 cut(s)	319, 431, 657
TasI	AATT	4 cut(s)	106, 423, 502, 684
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	2 cut(s)	82, 154
Tru1I	TTAA	3 cut(s)	285, 665, 741
Tru9I	TTAA	3 cut(s)	285, 665, 741
TseFI	GTSAC	1 cut(s)	808
TseI	GCWGC	3 cut(s)	125, 376, 785
Tsp45I	GTSAC	1 cut(s)	808
TspDTI	ATGAA	3 cut(s)	14, 95, 417
XapI	RAATTY	1 cut(s)	684
XceI	RCATGY	1 cut(s)	407
XmiI	GTMKAC	1 cut(s)	617
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	5 cut(s)	35, 188, 275, 372, 450
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.