Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

28962660 .. 28965363

Gene Structure 2704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g39260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGCAGAAGCTAGGGTTTCCGAGCATGGGGAGCTTGGATCAGTTCAAGTCCCTCTCGAAATCGGCCTCCGGAGGACCTCCGAAGACCTTCGCCTACTCTTCGCGCCCGCCGGAGTCGATCTCGTCGGGAAGCTTCGCGAACCTGAAGCTCACCGCAGAGAAGTTAGTGACAGAGCAAGCTTCTGTGAAAACAGATCTGGAAATTGCGAACACTAAGCTGAAAAAATCGGTGGAGCACATCCGTGCATTAGAGGAAAAATTGCAGAACGCTTTTAATGAAAATGCTAAGTTTAAAGTGAAGCAGAAGGAAGATGAAAAGCTGTGGAAGGGATTAGAGTCTAAGTTTTCTTCAACTAAAACACTGTGTGATCAGCTCACCGAAACTTTACAGCTCTTAGCTGGTCAAGTTCAGGATGCGGAGAGAGATAAAGAGGAATTTGAAGGCAAACTCTCTGCGAGTGCAGAAGCTCTTGATGGTTTGAGTCATCAAATGAATGATCTGTCTATAAAGCTAGAGTCAGCTGAGGAAACTATTAGGACTCGTGAAAAGGAGCTGGAGGGACGCAGACTCGAGAAAGAGGATACAGATAAACTTCACAGAAATGAACAAAGCAGAACTGCAAATCTCATAGAGGAAAAAGATGCTATGATTAAGAACATTGAAGAAAGTCTAGCAACTAATAGGTTGGCTACGGAGAGTTTGAACACTAAATTGGGTGAGGTGCATCTTGAGTTAAAGTTAAAAGAGGATGAAATCAGACGTTTGATAACTGAACAGGAGAACTTGGAAACAGAAAAGCATGATCTCCATTTGAACAACGATGACCTAGTTAAGAGATTAGATATGTCAGTCCTCGAGATAAAGAACCTTGATGGTTTGGTTCATGTGTTCACTTCACATTTGGCTGAATTGGATAGACAAAGTTTGAACTTCCTGGAAAAGTTTGATAAGCTGAACTCACTCTATGAGGCGTGCTTCCAGTTAGTCAATCAGGAGAGAGACCTTTCTGCCAAGTTTGCTGAGAGACAGTATGATCAACTACACGACAGGTTCTTGAACTTGACATCAGAAAAAGATGCTATACTACTGGCAAATCAGGAGTGGAACAATAGGGTCATGGAACTTCAGAAGGTTCAGGAGTCCATTATGACACAACTTTCAGAGGAAAGACGTACAGCCAGAGAAACGATACAGAAGCTGGAGTTTGAAACTGAAGCTCTGGTCTCCAAGAAGATTGAAACCGAAAAGTTGGTGTCTGAGTTAGAACTGCAGATTGATTCTCTGTCAGAAATTTCAAGATCATCTGAGAATAAAATGCAAGACCTCCTGATCAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

447

Amino Acids

51.2

Weight (kDa)

5.14

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	103, 137
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	3 cut(s)	107, 153, 416
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	434, 1290
AcuI	CTGAAG	3 cut(s)	164, 1109, 1233
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	1174
AfiI	CCNNNNNNNGG	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	933
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AleI	CACNNNNGTG	1 cut(s)	240
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	3 cut(s)	993, 1018, 1228
AlwI	GGATC	1 cut(s)	45
AlwNI	CAGNNNCTG	1 cut(s)	1198
Ama87I	CYCGRG	2 cut(s)	569, 854
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	1 cut(s)	63
ApoI	RAATTY	2 cut(s)	434, 1290
Asp700I	GAANNNNTTC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	142, 367, 728
AvaI	CYCGRG	2 cut(s)	569, 854
AvaII	GGWCC	1 cut(s)	74
BauI	CACGAG	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	237
BbvCI	CCTCAGC	1 cut(s)	522
BccI	CCATC	2 cut(s)	467, 866
BciT130I	CCWGG	1 cut(s)	935
BciVI	GTATCC	1 cut(s)	574
BclI	TGATCA	3 cut(s)	367, 1033, 1329
BcoDI	GTCTC	3 cut(s)	993, 1018, 1228
BfaI	CTAG	4 cut(s)	11, 512, 671, 827
BfmI	CTRYAG	1 cut(s)	1268
BfuI	GTATCC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	935
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	2 cut(s)	569, 854
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	935
BmsI	GCATC	4 cut(s)	403, 631, 733, 1066
BpiI	GAAGAC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	2 cut(s)	575, 1220
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	749
BsaBI	GATNNNNATC	1 cut(s)	1334
BsaI	GGTCTC	2 cut(s)	993, 1228
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	979, 1092
Bse8I	GATNNNNATC	1 cut(s)	1334
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	935
BseGI	GGATG	3 cut(s)	237, 418, 754
BseJI	GATNNNNATC	1 cut(s)	1334
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	4 cut(s)	513, 1011, 1248, 1296
BseNI	ACTGG	2 cut(s)	979, 1092
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	2 cut(s)	103, 137
BshFI	GGCC	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	2 cut(s)	569, 854
BsiSI	CCGG	2 cut(s)	69, 110
BslFI	GGGAC	2 cut(s)	34, 573
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	3 cut(s)	993, 1018, 1228
BsmFI	GGGAC	2 cut(s)	34, 573
BsnI	GGCC	1 cut(s)	65
Bso31I	GGTCTC	2 cut(s)	993, 1228
BsoBI	CYCGRG	2 cut(s)	569, 854
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	9 cut(s)	37, 117, 193, 367, 496, 802, 1033, 1298, 1329
Bsp68I	TCGCGA	1 cut(s)	137
BspACI	CCGC	3 cut(s)	107, 153, 416
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	4 cut(s)	514, 1012, 1249, 1297
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	2 cut(s)	103, 137
BspMAI	CTGCAG	1 cut(s)	1272
BspPI	GGATC	1 cut(s)	45
BspTNI	GGTCTC	2 cut(s)	993, 1228
BsrI	ACTGG	2 cut(s)	979, 1092
BssMI	GATC	9 cut(s)	37, 117, 193, 367, 496, 802, 1033, 1298, 1329
BssSI	CACGAG	1 cut(s)	540
Bst2BI	CACGAG	1 cut(s)	540
Bst2UI	CCWGG	1 cut(s)	935
Bst4CI	ACNGT	2 cut(s)	363, 1029
Bst6I	CTCTTC	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	107, 177, 973
BstDEI	CTNAG	8 cut(s)	213, 285, 339, 394, 522, 1020, 1257, 1305
BstF5I	GGATG	3 cut(s)	237, 418, 754
BstFNI	CGCG	2 cut(s)	103, 137
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	9 cut(s)	40, 120, 196, 370, 499, 805, 1036, 1301, 1332
BstMAI	GTCTC	3 cut(s)	993, 1018, 1228
BstMBI	GATC	9 cut(s)	37, 117, 193, 367, 496, 802, 1033, 1298, 1329
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 1016
BstNI	CCWGG	1 cut(s)	935
BstSCI	CCNGG	1 cut(s)	933
BstSFI	CTRYAG	1 cut(s)	1268
BstUI	CGCG	2 cut(s)	103, 137
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	237, 418, 754
BtsIMutI	CAGTG	1 cut(s)	359
BtuMI	TCGCGA	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	107, 177, 973
CaiI	CAGNNNCTG	1 cut(s)	1198
CfoI	GCGC	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	1 cut(s)	570
Csp6I	GTAC	1 cut(s)	1173
CviAII	CATG	4 cut(s)	25, 800, 884, 1117
CviQI	GTAC	1 cut(s)	1173
DdeI	CTNAG	8 cut(s)	213, 285, 339, 394, 522, 1020, 1257, 1305
DpnI	GATC	9 cut(s)	39, 119, 195, 369, 498, 804, 1035, 1300, 1331
DpnII	GATC	9 cut(s)	37, 117, 193, 367, 496, 802, 1033, 1298, 1329
DraI	TTTAAA	1 cut(s)	292
DraIII	CACNNNGTG	1 cut(s)	365
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
Eco31I	GGTCTC	2 cut(s)	993, 1228
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	3 cut(s)	164, 1109, 1233
Eco88I	CYCGRG	2 cut(s)	569, 854
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	933
FaeI	CATG	4 cut(s)	28, 803, 887, 1120
FaqI	GGGAC	2 cut(s)	34, 573
FatI	CATG	4 cut(s)	24, 799, 883, 1116
FauI	CCCGC	1 cut(s)	114
FbaI	TGATCA	3 cut(s)	367, 1033, 1329
FokI	GGATG	3 cut(s)	224, 425, 761
FspBI	CTAG	4 cut(s)	11, 512, 671, 827
GlaI	GCGC	1 cut(s)	104
GsuI	CTGGAG	2 cut(s)	575, 1220
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	2 cut(s)	69, 110
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	28, 803, 887, 1120
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HindIII	AAGCTT	2 cut(s)	130, 177
HinfI	GANTC	8 cut(s)	113, 335, 481, 515, 538, 567, 1139, 1277
HpaII	CCGG	2 cut(s)	69, 110
HphI	GGTGA	3 cut(s)	142, 367, 728
Hpy166II	GTNNAC	1 cut(s)	891
Hpy188I	TCNGA	9 cut(s)	21, 81, 758, 1069, 1128, 1162, 1258, 1288, 1306
Hpy8I	GTNNAC	1 cut(s)	891
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	5 cut(s)	97, 298, 319, 434, 1123
HpyCH4III	ACNGT	2 cut(s)	363, 1029
HpyCH4IV	ACGT	2 cut(s)	760, 1171
HpyCH4V	TGCA	8 cut(s)	4, 245, 262, 461, 620, 724, 1270, 1318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 1016
HpyF3I	CTNAG	8 cut(s)	213, 285, 339, 394, 522, 1020, 1257, 1305
HpySE526I	ACGT	2 cut(s)	760, 1171
Hsp92II	CATG	4 cut(s)	28, 803, 887, 1120
HspAI	GCGC	1 cut(s)	103
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	3 cut(s)	367, 1033, 1329
Kzo9I	GATC	9 cut(s)	37, 117, 193, 367, 496, 802, 1033, 1298, 1329
LmnI	GCTCC	3 cut(s)	30, 232, 550
LweI	GCATC	4 cut(s)	403, 631, 733, 1066
MaeI	CTAG	4 cut(s)	11, 512, 671, 827
MaeII	ACGT	2 cut(s)	760, 1171
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	9 cut(s)	39, 119, 195, 369, 498, 804, 1035, 1300, 1331
MboI	GATC	9 cut(s)	37, 117, 193, 367, 496, 802, 1033, 1298, 1329
MboII	GAAGA	6 cut(s)	90, 94, 320, 339, 674, 1243
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	6 cut(s)	201, 257, 434, 710, 908, 1290
MlyI	GAGTC	7 cut(s)	122, 344, 490, 524, 532, 561, 1148
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	6 cut(s)	273, 291, 651, 734, 740, 831
MslI	CAYNNNNRTG	2 cut(s)	240, 600
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	2 cut(s)	69, 110
MspR9I	CCNGG	1 cut(s)	935
MvaI	CCWGG	1 cut(s)	935
MvnI	CGCG	2 cut(s)	103, 137
MwoI	GCNNNNNNNGC	2 cut(s)	30, 1016
NdeII	GATC	9 cut(s)	37, 117, 193, 367, 496, 802, 1033, 1298, 1329
NlaIII	CATG	4 cut(s)	28, 803, 887, 1120
NmuCI	GTSAC	1 cut(s)	166
NruI	TCGCGA	1 cut(s)	137
OliI	CACNNNNGTG	1 cut(s)	240
PaeR7I	CTCGAG	2 cut(s)	569, 854
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	1277
PfoI	TCCNGGA	1 cut(s)	933
PleI	GAGTC	7 cut(s)	121, 343, 489, 523, 532, 561, 1147
PpsI	GAGTC	7 cut(s)	121, 343, 489, 523, 532, 561, 1147
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	933
PspGI	CCWGG	1 cut(s)	933
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
PstI	CTGCAG	1 cut(s)	1272
PstNI	CAGNNNCTG	1 cut(s)	1198
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	521
RruI	TCGCGA	1 cut(s)	137
RsaI	GTAC	1 cut(s)	1174
RsaNI	GTAC	1 cut(s)	1173
RseI	CAYNNNNRTG	2 cut(s)	240, 600
SaqAI	TTAA	6 cut(s)	273, 291, 651, 734, 740, 831
Sau3AI	GATC	9 cut(s)	37, 117, 193, 367, 496, 802, 1033, 1298, 1329
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	7 cut(s)	122, 344, 490, 524, 532, 561, 1148
ScrFI	CCNGG	1 cut(s)	935
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	4 cut(s)	403, 631, 733, 1066
SfcI	CTRYAG	1 cut(s)	1268
Sfr274I	CTCGAG	2 cut(s)	569, 854
SinI	GGWCC	1 cut(s)	74
SlaI	CTCGAG	2 cut(s)	569, 854
SmiMI	CAYNNNNRTG	2 cut(s)	240, 600
SmlI	CTYRAG	3 cut(s)	569, 728, 854
SmoI	CTYRAG	3 cut(s)	569, 728, 854
Sse9I	AATT	6 cut(s)	201, 257, 434, 710, 908, 1290
SsiI	CCGC	3 cut(s)	107, 153, 416
SspMI	CTAG	4 cut(s)	11, 512, 671, 827
StyD4I	CCNGG	1 cut(s)	933
TaaI	ACNGT	2 cut(s)	363, 1029
TaiI	ACGT	2 cut(s)	763, 1174
TaqI	TCGA	4 cut(s)	56, 116, 570, 855
TasI	AATT	6 cut(s)	201, 257, 434, 710, 908, 1290
TfiI	GAWTC	1 cut(s)	1277
Tru1I	TTAA	6 cut(s)	273, 291, 651, 734, 740, 831
Tru9I	TTAA	6 cut(s)	273, 291, 651, 734, 740, 831
TscAI	CASTG	1 cut(s)	366
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	6 cut(s)	291, 327, 506, 618, 765, 872
TspGWI	ACGGA	2 cut(s)	230, 707
TspRI	CASTG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	2 cut(s)	434, 1290
XhoI	CTCGAG	2 cut(s)	569, 854
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	4 cut(s)	11, 512, 671, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.