Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

66389236 .. 66400089

Gene Structure 10854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21549

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGAAGTTCCCCCGAGCACGAGTTCAGTTTCAAATGGAATACTCTATTTCGTCAAGGAGAAACCCTATTGTGAGAAGGAGAGGTCAGCGCTCTCTAAGAAGACCAAAGCATGATGAGAAGGTGGGACGATATTCTGAAAATCATTTTAATTCTTTCAGGTTTGATCTTTTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

58

Amino Acids

7.23

Weight (kDa)

11.71

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	32
Alw21I	GWGCWC	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	90
AvaI	CYCGRG	1 cut(s)	12
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	19
BfoI	RGCGCY	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	19
BsiHKCI	CYCGRG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	163
BssMI	GATC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	163
BstV2I	GAAGAC	1 cut(s)	106
CfoI	GCGC	1 cut(s)	90
CviAII	CATG	1 cut(s)	110
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eco47III	AGCGCT	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	12
FaeI	CATG	1 cut(s)	113
FaiI	YATR	3 cut(s)	111, 173, 175
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	1 cut(s)	109
FauNDI	CATATG	1 cut(s)	173
GlaI	GCGC	1 cut(s)	89
HaeII	RGCGCY	1 cut(s)	91
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
Hpy188I	TCNGA	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	69, 112
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	1 cut(s)	163
LpnPI	CCDG	1 cut(s)	142
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	111
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	1 cut(s)	74
MseI	TTAA	1 cut(s)	147
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	163
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	3 cut(s)	85, 123, 161
SgeI	CNNG	7 cut(s)	24, 26, 30, 32, 66, 122, 169
Sse9I	AATT	1 cut(s)	148
TasI	AATT	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TspDTI	ATGAA	2 cut(s)	17, 160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.