Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

69841385 .. 69844819

Gene Structure 3435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21831

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGAAAAGCAAAAGGCAGAAAAACTTGTTCGAGAAAGGGCGATAGAATGTGAGAAAAAACTTGAAGAATGCAGAGAAGAATCTAGGCAGCACTTAATGCATGTTCAGGAGGAACATACTGCGCTGGTCAGTAGTCTTCAGCAGGAGCATGATAAAAAGGAACGAAGTATAAAAGCTAAACACAGTGAAGAGCTAAAGCAGATCCAACTTCAAGCTGAAAACGAGTTGAGAGAGAAAATTTCATCAATGAGGAATGAACATGAAGCCCAACTGAAAGCTTTGAGGCTTCAGCATGAAGATGAGATTAAGAAGCTTCAGGAGGACTTGGATCTTCAAAAGTCCAAAGAGGAGAAGCAGAGGGCATTACTGCAATTGCAGTGGAAAGTTATGAGTGATAAGCCAGAAGAGGAGCAAGAAGTGAATTCAAAGAAGGAATACTCAATTTCGTCAAGGAGAAACCCTGTTGTGAGAAGGAGAGGTCAGCGTTCTCTGAGAAGACCAGAGCATGAGAAAGATTCACCTCTAGTGGGAGCAAAACAAACACCTGTGTCAACACTGTTGAAGAAAGCTTCAGAGAATATCAATTCACCAACTGTAATGAATATTTCAAAGCACCACAAAAAGGTAATTCGTGACGAATATGAAGTTGAAACTGGTAATGGAAGAACTATTAAACGGAAATTAAGAAGCACAGTCATGTTTGAGGATCCAAGAAAACATAAGAGGACAAGTACACCAAAAGTCAAAAGCCCCAGGAGTGTGGTCAAGGGATCTAAGGGAGAGGGTCAACCACGTCCTTCAAACATCGTTGACCTGTTTTCTAAAGGGTCTCTGAATCCATATGCTGATGATCCATATGCATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

33.79

Weight (kDa)

9.48

Isoelectric Point (pI)

76.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	6 cut(s)	196, 336, 701, 714, 778, 845
AcsI	RAATTY	2 cut(s)	237, 421
AcuI	CTGAAG	4 cut(s)	122, 272, 299, 555
AfaI	GTAC	1 cut(s)	733
AfiI	CCNNNNNNNGG	2 cut(s)	527, 622
AgsI	TTSAA	8 cut(s)	65, 212, 335, 426, 562, 609, 650, 801
AjiI	CACGTC	1 cut(s)	794
AjnI	CCWGG	1 cut(s)	752
AluBI	AGCT	6 cut(s)	176, 193, 215, 278, 313, 569
AluI	AGCT	6 cut(s)	176, 193, 215, 278, 313, 569
Alw26I	GTCTC	1 cut(s)	834
AlwI	GGATC	6 cut(s)	196, 336, 701, 714, 778, 845
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	2 cut(s)	237, 421
AspLEI	GCGC	1 cut(s)	124
AsuHPI	GGTGA	2 cut(s)	510, 579
BamHI	GGATCC	1 cut(s)	706
BbsI	GAAGAC	2 cut(s)	128, 502
BbvI	GCAGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	834
BfaI	CTAG	2 cut(s)	84, 524
BisI	GCNGC	1 cut(s)	89
BlsI	GCNGC	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	754
BmgBI	CACGTC	1 cut(s)	794
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	1 cut(s)	754
BpiI	GAAGAC	2 cut(s)	128, 502
BsaI	GGTCTC	1 cut(s)	834
BsaJI	CCNNGG	1 cut(s)	752
Bsc4I	CCNNNNNNNGG	2 cut(s)	527, 622
Bse1I	ACTGG	1 cut(s)	658
BseBI	CCWGG	1 cut(s)	754
BseDI	CCNNGG	1 cut(s)	752
BseLI	CCNNNNNNNGG	2 cut(s)	527, 622
BseMII	CTCAG	1 cut(s)	482
BseNI	ACTGG	1 cut(s)	658
BseRI	GAGGAG	2 cut(s)	362, 422
BseXI	GCAGC	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	527, 622
BsmAI	GTCTC	1 cut(s)	834
BsmI	GAATGC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	834
Bsp143I	GATC	5 cut(s)	201, 328, 706, 770, 850
BspCNI	CTCAG	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	708
BspPI	GGATC	6 cut(s)	196, 336, 701, 714, 778, 845
BspQI	GCTCTTC	1 cut(s)	183
BspTNI	GGTCTC	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	752
BssMI	GATC	5 cut(s)	201, 328, 706, 770, 850
Bst2UI	CCWGG	1 cut(s)	754
Bst4CI	ACNGT	4 cut(s)	185, 558, 595, 694
Bst6I	CTCTTC	2 cut(s)	183, 399
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstDEI	CTNAG	2 cut(s)	491, 774
BstHHI	GCGC	1 cut(s)	124
BstKTI	GATC	5 cut(s)	204, 331, 709, 773, 853
BstMAI	GTCTC	1 cut(s)	834
BstMBI	GATC	5 cut(s)	201, 328, 706, 770, 850
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	1 cut(s)	754
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	752
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	2 cut(s)	128, 502
BstX2I	RGATCY	4 cut(s)	201, 328, 706, 770
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstYI	RGATCY	4 cut(s)	201, 328, 706, 770
BtrI	CACGTC	1 cut(s)	794
BtsI	GCAGTG	1 cut(s)	383
BtsIMutI	CAGTG	3 cut(s)	190, 383, 554
CfoI	GCGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	732
CspCI	CAANNNNNGTGG	2 cut(s)	359, 394
CviAII	CATG	6 cut(s)	101, 149, 260, 293, 506, 697
CviQI	GTAC	1 cut(s)	732
DdeI	CTNAG	2 cut(s)	491, 774
DpnI	GATC	5 cut(s)	203, 330, 708, 772, 852
DpnII	GATC	5 cut(s)	201, 328, 706, 770, 850
Eam1104I	CTCTTC	2 cut(s)	183, 399
EarI	CTCTTC	2 cut(s)	183, 399
Eco31I	GGTCTC	1 cut(s)	834
Eco57I	CTGAAG	4 cut(s)	122, 272, 299, 555
EcoRI	GAATTC	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	752
EcoT22I	ATGCAT	2 cut(s)	102, 862
FaeI	CATG	6 cut(s)	104, 152, 263, 296, 509, 700
FatI	CATG	6 cut(s)	100, 148, 259, 292, 505, 696
FauNDI	CATATG	2 cut(s)	841, 856
Fnu4HI	GCNGC	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	89
FspBI	CTAG	2 cut(s)	84, 524
GlaI	GCGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	124
Hin1II	CATG	6 cut(s)	104, 152, 263, 296, 509, 700
Hin6I	GCGC	1 cut(s)	122
HinP1I	GCGC	1 cut(s)	122
HincII	GTYRAC	3 cut(s)	552, 788, 811
HindII	GTYRAC	3 cut(s)	552, 788, 811
HindIII	AAGCTT	3 cut(s)	276, 311, 567
HinfI	GANTC	3 cut(s)	80, 515, 835
HphI	GGTGA	2 cut(s)	510, 579
Hpy166II	GTNNAC	4 cut(s)	552, 734, 788, 811
Hpy188I	TCNGA	3 cut(s)	492, 574, 834
Hpy188III	TCNNGA	4 cut(s)	32, 107, 317, 632
Hpy8I	GTNNAC	4 cut(s)	552, 734, 788, 811
HpyAV	CCTTC	3 cut(s)	424, 465, 807
HpyCH4III	ACNGT	4 cut(s)	185, 558, 595, 694
HpyCH4IV	ACGT	1 cut(s)	793
HpyCH4V	TGCA	5 cut(s)	72, 100, 370, 376, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	2 cut(s)	491, 774
HpySE526I	ACGT	1 cut(s)	793
Hsp92II	CATG	6 cut(s)	104, 152, 263, 296, 509, 700
HspAI	GCGC	1 cut(s)	122
Kzo9I	GATC	5 cut(s)	201, 328, 706, 770, 850
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	3 cut(s)	145, 409, 530
Lsp1109I	GCAGC	1 cut(s)	100
MaeI	CTAG	2 cut(s)	84, 524
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	5 cut(s)	203, 330, 708, 772, 852
MboI	GATC	5 cut(s)	201, 328, 706, 770, 850
MfeI	CAATTG	1 cut(s)	371
MflI	RGATCY	4 cut(s)	201, 328, 706, 770
MluCI	AATT	7 cut(s)	237, 371, 421, 441, 583, 627, 680
MmeI	TCCRAC	1 cut(s)	229
Mph1103I	ATGCAT	2 cut(s)	102, 862
MseI	TTAA	5 cut(s)	95, 306, 672, 683, 868
MslI	CAYNNNNRTG	2 cut(s)	297, 695
MspR9I	CCNGG	1 cut(s)	754
MunI	CAATTG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	754
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeI	CATATG	2 cut(s)	841, 856
NdeII	GATC	5 cut(s)	201, 328, 706, 770, 850
NlaIII	CATG	6 cut(s)	104, 152, 263, 296, 509, 700
NlaIV	GGNNCC	1 cut(s)	708
NmuCI	GTSAC	1 cut(s)	632
NsiI	ATGCAT	2 cut(s)	102, 862
NspI	RCATGY	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	3 cut(s)	80, 515, 835
PkrI	GCNGC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	752
PspGI	CCWGG	1 cut(s)	752
PspN4I	GGNNCC	1 cut(s)	708
PsuI	RGATCY	4 cut(s)	201, 328, 706, 770
RsaI	GTAC	1 cut(s)	733
RsaNI	GTAC	1 cut(s)	732
RseI	CAYNNNNRTG	2 cut(s)	297, 695
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	5 cut(s)	95, 306, 672, 683, 868
SatI	GCNGC	1 cut(s)	89
Sau3AI	GATC	5 cut(s)	201, 328, 706, 770, 850
ScrFI	CCNGG	1 cut(s)	754
SmiMI	CAYNNNNRTG	2 cut(s)	297, 695
Sse9I	AATT	7 cut(s)	237, 371, 421, 441, 583, 627, 680
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	2 cut(s)	84, 524
StyD4I	CCNGG	1 cut(s)	752
TaaI	ACNGT	4 cut(s)	185, 558, 595, 694
TaiI	ACGT	1 cut(s)	796
TaqI	TCGA	1 cut(s)	31
TasI	AATT	7 cut(s)	237, 371, 421, 441, 583, 627, 680
TatI	WGTACW	1 cut(s)	731
TfiI	GAWTC	3 cut(s)	80, 515, 835
Tru1I	TTAA	5 cut(s)	95, 306, 672, 683, 868
Tru9I	TTAA	5 cut(s)	95, 306, 672, 683, 868
TscAI	CASTG	3 cut(s)	190, 383, 561
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	6 cut(s)	231, 270, 276, 309, 614, 657
TspGWI	ACGGA	1 cut(s)	691
TspRI	CASTG	3 cut(s)	190, 383, 561
XapI	RAATTY	2 cut(s)	237, 421
XceI	RCATGY	1 cut(s)	104
XspI	CTAG	2 cut(s)	84, 524
Zsp2I	ATGCAT	2 cut(s)	102, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.