Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004062.1

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

16625 .. 19499

Gene Structure 2875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004062.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

atgcagaagctagggtttccgagcatcaggagcttggatcagttcaagtccctctcgaaatcggtctcaggaggacctccgaagaccttcgcctactcttcgcgtccgccggagtcgacctcgtcgggaagtttcgcaaacttgaagctcaccgcagagaaattagtgaaagagcaagcttctgtgaaatcagatctggaaatggcgaacactaagctgaaaaaatcaatggagcacatcagtgcattagaggaaaagttgcagaacgctttcaatgaaaatgccaagtttaaggtgaagcagaaggaagatgagaagctgtggaagggattagagtctaagttttcttcaactaaaacattgtgtgatcaactcacagaaactttacagctcttagctggtcaagtccaggatgctgagaaagataaagagtcctttgaaggcaaactctctgcgagtgcagtagctcttgatggtttgagccaacaaatgaatgatctggctataaagctagagtcagcagaggaaactataaggaatcgtgaaaaggagctggaggaacgtagactcgagaaagaggagacagataaactttacagaaatgaacagtgcagaactgcaaatctcatagaggaaaaagatgctatgattaagaactttgaagaaactctagcaactaataggttggctacagagagtctgaacactaaattgggtggggtgcatcttgagttaaagttgaaagaggatgaaatcagacgtttgataactggtcaggagaacttggaaacagaaaagcatgatcttcatatgagcaacaatgaccttgttaagagattagatatgtcagtccttgagataaagaatcttgaaggttttgttcatgtgttggctgcacatttggctgaattggacagacagagtttgaactttctagaaaagtttgataagctaaactctctctacgaggcttgcttccggttggtcaatcaggagagagacctttctgccaagcttgctaagagacagtatgatcaactgcacgacaggttcttgaacttgacatcagaaaaagatgctatacaattggtaaatcaggagttgaacaataaggtcatggaacttcagaaagttcaggagtctattatggcacaactttcagaggaatgccgtatagccagggagaggatacagaagttggagtttgaagctgaagctctggtctcaaagaagattgaaacagagaagttggtgtctgaattagaactgcaaattgattctctgtcagaaagttcaagatcatctgagaataaaaggcaaattctgttgctgaaaatctcagcactagaaactgagaataaagataatacagagaaactacaagcagagatacagaagaaagcggggagaaacataagcaacgttgcctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

477

Amino Acids

54.5

Weight (kDa)

5.58

Isoelectric Point (pI)

47.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	116, 565
AccII	CGCG	1 cut(s)	103
AciI	CCGC	3 cut(s)	107, 153, 1403
AclI	AACGTT	1 cut(s)	1422
AclWI	GGATC	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	1320
AcuI	CTGAAG	2 cut(s)	1109, 1233
AfiI	CCNNNNNNNGG	1 cut(s)	1185
AjnI	CCWGG	2 cut(s)	408, 1178
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AleI	CACNNNNGTG	1 cut(s)	240
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	5 cut(s)	70, 575, 993, 1018, 1228
AlwI	GGATC	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	569
ApeKI	GCWGC	1 cut(s)	893
ApoI	RAATTY	1 cut(s)	1320
Asp700I	GAANNNNTTC	2 cut(s)	86, 269
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	2 cut(s)	142, 307
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	74
BaeI	ACNNNNGTAYC	2 cut(s)	1181, 1214
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	880
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	1 cut(s)	1155
BciT130I	CCWGG	2 cut(s)	410, 1180
BciVI	GTATCC	1 cut(s)	1182
BclI	TGATCA	2 cut(s)	367, 1033
BcoDI	GTCTC	5 cut(s)	70, 575, 993, 1018, 1228
BfaI	CTAG	5 cut(s)	11, 512, 671, 935, 1346
BfmI	CTRYAG	1 cut(s)	690
BfuI	GTATCC	1 cut(s)	1182
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	1 cut(s)	894
BlsI	GCNGC	1 cut(s)	895
Bme1390I	CCNGG	2 cut(s)	410, 1180
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	2 cut(s)	410, 1180
BmsI	GCATC	5 cut(s)	33, 403, 631, 733, 1066
BpiI	GAAGAC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	1 cut(s)	575
BpuEI	CTTGAG	2 cut(s)	749, 875
BsaI	GGTCTC	3 cut(s)	70, 993, 1228
BsaJI	CCNNGG	1 cut(s)	1179
BsaWI	WCCGGW	1 cut(s)	978
Bsc4I	CCNNNNNNNGG	1 cut(s)	1185
Bse1I	ACTGG	1 cut(s)	775
BseBI	CCWGG	2 cut(s)	410, 1180
BseDI	CCNNGG	1 cut(s)	1179
BseGI	GGATG	2 cut(s)	418, 754
BseLI	CCNNNNNNNGG	1 cut(s)	1185
BseMII	CTCAG	5 cut(s)	81, 408, 1296, 1344, 1353
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	880
BsgI	GTGCAG	4 cut(s)	480, 631, 879, 1025
Bsh1236I	CGCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	110, 979
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	1185
BsmAI	GTCTC	5 cut(s)	70, 575, 993, 1018, 1228
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	1172
Bso31I	GGTCTC	3 cut(s)	70, 993, 1228
BsoBI	CYCGRG	1 cut(s)	569
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp143I	GATC	7 cut(s)	37, 193, 367, 496, 802, 1033, 1298
BspACI	CCGC	3 cut(s)	107, 153, 1403
BspCNI	CTCAG	5 cut(s)	80, 409, 1297, 1345, 1352
BspFNI	CGCG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	45
BspTNI	GGTCTC	3 cut(s)	70, 993, 1228
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	1 cut(s)	1179
BssMI	GATC	7 cut(s)	37, 193, 367, 496, 802, 1033, 1298
Bst2UI	CCWGG	2 cut(s)	410, 1180
Bst4CI	ACNGT	2 cut(s)	609, 1029
Bst6I	CTCTTC	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	177, 973, 1017
BstDEI	CTNAG	9 cut(s)	67, 213, 339, 394, 417, 1020, 1305, 1339, 1353
BstF5I	GGATG	2 cut(s)	418, 754
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	7 cut(s)	40, 196, 370, 499, 805, 1036, 1301
BstMAI	GTCTC	5 cut(s)	70, 575, 993, 1018, 1228
BstMBI	GATC	7 cut(s)	37, 193, 367, 496, 802, 1033, 1298
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 902, 1016
BstNI	CCWGG	2 cut(s)	410, 1180
BstSCI	CCNGG	2 cut(s)	408, 1178
BstSFI	CTRYAG	1 cut(s)	690
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	880
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	1 cut(s)	1182
BtsCI	GGATG	2 cut(s)	418, 754
BtsIMutI	CAGTG	2 cut(s)	247, 614
Cac8I	GCNNGC	3 cut(s)	177, 973, 1017
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	1 cut(s)	92
CviAII	CATG	3 cut(s)	800, 884, 1117
DdeI	CTNAG	9 cut(s)	67, 213, 339, 394, 417, 1020, 1305, 1339, 1353
DpnI	GATC	7 cut(s)	39, 195, 369, 498, 804, 1035, 1300
DpnII	GATC	7 cut(s)	37, 193, 367, 496, 802, 1033, 1298
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	96
Eco31I	GGTCTC	3 cut(s)	70, 993, 1228
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	2 cut(s)	1109, 1233
Eco88I	CYCGRG	1 cut(s)	569
EcoO109I	RGGNCCY	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	408, 1178
FaeI	CATG	3 cut(s)	803, 887, 1120
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	3 cut(s)	799, 883, 1116
FauI	CCCGC	1 cut(s)	1396
FauNDI	CATATG	1 cut(s)	810
FbaI	TGATCA	2 cut(s)	367, 1033
FblI	GTMKAC	2 cut(s)	116, 565
Fnu4HI	GCNGC	1 cut(s)	894
FokI	GGATG	2 cut(s)	425, 761
Fsp4HI	GCNGC	1 cut(s)	894
FspBI	CTAG	5 cut(s)	11, 512, 671, 935, 1346
GluI	GCNGC	1 cut(s)	894
GsuI	CTGGAG	1 cut(s)	575
HapII	CCGG	2 cut(s)	110, 979
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	3 cut(s)	803, 887, 1120
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HindIII	AAGCTT	2 cut(s)	177, 1013
HpaII	CCGG	2 cut(s)	110, 979
HphI	GGTGA	2 cut(s)	142, 307
Hpy166II	GTNNAC	2 cut(s)	117, 566
Hpy8I	GTNNAC	2 cut(s)	117, 566
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	5 cut(s)	97, 298, 319, 434, 866
HpyCH4III	ACNGT	2 cut(s)	609, 1029
HpyCH4IV	ACGT	3 cut(s)	562, 760, 1422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 902, 1016
HpyF3I	CTNAG	9 cut(s)	67, 213, 339, 394, 417, 1020, 1305, 1339, 1353
HpySE526I	ACGT	3 cut(s)	562, 760, 1422
Hsp92II	CATG	3 cut(s)	803, 887, 1120
Ksp22I	TGATCA	2 cut(s)	367, 1033
Kzo9I	GATC	7 cut(s)	37, 193, 367, 496, 802, 1033, 1298
LmnI	GCTCC	3 cut(s)	30, 232, 550
Lsp1109I	GCAGC	1 cut(s)	880
LweI	GCATC	5 cut(s)	33, 403, 631, 733, 1066
MaeI	CTAG	5 cut(s)	11, 512, 671, 935, 1346
MaeII	ACGT	3 cut(s)	562, 760, 1422
MalI	GATC	7 cut(s)	39, 195, 369, 498, 804, 1035, 1300
MboI	GATC	7 cut(s)	37, 193, 367, 496, 802, 1033, 1298
MboII	GAAGA	8 cut(s)	90, 94, 320, 339, 674, 797, 1243, 1408
MfeI	CAATTG	1 cut(s)	1085
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	1 cut(s)	237
MluCI	AATT	7 cut(s)	161, 710, 908, 1085, 1259, 1272, 1320
MlyI	GAGTC	7 cut(s)	122, 344, 440, 524, 561, 706, 1148
MmeI	TCCRAC	1 cut(s)	1179
MroXI	GAANNNNTTC	2 cut(s)	86, 269
MseI	TTAA	4 cut(s)	291, 651, 734, 831
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	2 cut(s)	110, 979
MspR9I	CCNGG	2 cut(s)	410, 1180
MunI	CAATTG	1 cut(s)	1085
Mva1269I	GAATGC	1 cut(s)	1172
MvaI	CCWGG	2 cut(s)	410, 1180
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	3 cut(s)	30, 902, 1016
NdeI	CATATG	1 cut(s)	810
NdeII	GATC	7 cut(s)	37, 193, 367, 496, 802, 1033, 1298
NlaIII	CATG	3 cut(s)	803, 887, 1120
OliI	CACNNNNGTG	1 cut(s)	240
PaeR7I	CTCGAG	1 cut(s)	569
PctI	GAATGC	1 cut(s)	1172
PdmI	GAANNNNTTC	2 cut(s)	86, 269
PfeI	GAWTC	3 cut(s)	538, 865, 1277
PflFI	GACNNNGTC	1 cut(s)	121
PfoI	TCCNGGA	1 cut(s)	408
PkrI	GCNGC	1 cut(s)	895
PleI	GAGTC	7 cut(s)	121, 343, 439, 523, 561, 705, 1147
PpsI	GAGTC	7 cut(s)	121, 343, 439, 523, 561, 705, 1147
PpuMI	RGGWCCY	1 cut(s)	74
Psp1406I	AACGTT	1 cut(s)	1422
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	408, 1178
PspGI	CCWGG	2 cut(s)	408, 1178
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	240
SalI	GTCGAC	1 cut(s)	115
SaqAI	TTAA	4 cut(s)	291, 651, 734, 831
SatI	GCNGC	1 cut(s)	894
Sau3AI	GATC	7 cut(s)	37, 193, 367, 496, 802, 1033, 1298
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	7 cut(s)	122, 344, 440, 524, 561, 706, 1148
ScrFI	CCNGG	2 cut(s)	410, 1180
SduI	GDGCHC	1 cut(s)	237
SfaNI	GCATC	5 cut(s)	33, 403, 631, 733, 1066
SfcI	CTRYAG	1 cut(s)	690
Sfr274I	CTCGAG	1 cut(s)	569
SinI	GGWCC	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	569
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	3 cut(s)	569, 728, 854
SmoI	CTYRAG	3 cut(s)	569, 728, 854
Sse9I	AATT	7 cut(s)	161, 710, 908, 1085, 1259, 1272, 1320
SsiI	CCGC	3 cut(s)	107, 153, 1403
SspMI	CTAG	5 cut(s)	11, 512, 671, 935, 1346
StyD4I	CCNGG	2 cut(s)	408, 1178
TaaI	ACNGT	2 cut(s)	609, 1029
TaiI	ACGT	3 cut(s)	565, 763, 1425
TaqI	TCGA	3 cut(s)	56, 116, 570
TaqII	GACCGA	1 cut(s)	52
TasI	AATT	7 cut(s)	161, 710, 908, 1085, 1259, 1272, 1320
TfiI	GAWTC	3 cut(s)	538, 865, 1277
Tru1I	TTAA	4 cut(s)	291, 651, 734, 831
Tru9I	TTAA	4 cut(s)	291, 651, 734, 831
TscAI	CASTG	2 cut(s)	247, 614
TseI	GCWGC	1 cut(s)	893
TspDTI	ATGAA	6 cut(s)	291, 506, 618, 765, 797, 872
TspRI	CASTG	2 cut(s)	247, 614
Tth111I	GACNNNGTC	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	74
XapI	RAATTY	1 cut(s)	1320
XbaI	TCTAGA	1 cut(s)	934
XhoI	CTCGAG	1 cut(s)	569
XmiI	GTMKAC	2 cut(s)	116, 565
XmnI	GAANNNNTTC	2 cut(s)	86, 269
XspI	CTAG	5 cut(s)	11, 512, 671, 935, 1346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.