Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

5088381 .. 5089181

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAGTTGAAAATGGTAATGGGAAGAACTATTAAAAGGAAATCAAGAAGCACAGCCATGTTTGAGGATCCAAGAAAACATAAGAGGACAAGTACACCAAAAGTCAAAAGCCCCAGGAGTGTAGTCAAGCTGGATGCATTGCGTGAGTTATATAATGCAGCACTCATTTGGATTCTGCAAATACTGAATTTGCAATATGTTGTTTTTGTTATGTCGGGATCTAAGGGAGAGGGTCAACCACGTCCTTCAAAAATCGGTGACCGGTTTTCAGAAGGGTCTCTGAATCCATATGCTGATGATCCATATGCATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.99

Weight (kDa)

10.16

Isoelectric Point (pI)

55.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	62, 75, 226, 293
AcsI	RAATTY	1 cut(s)	187
AfaI	GTAC	1 cut(s)	94
AgeI	ACCGGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	10, 249
AjiI	CACGTC	1 cut(s)	242
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	4 cut(s)	62, 75, 226, 293
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	187
AsiGI	ACCGGT	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	269
BamHI	GGATCC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	1 cut(s)	124
BsaI	GGTCTC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	261
Bse118I	RCCGGY	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	139
BseMI	GCAATG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	170
BshTI	ACCGGT	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	262
BsmAI	GTCTC	1 cut(s)	282
Bso31I	GGTCTC	1 cut(s)	282
Bsp143I	GATC	3 cut(s)	67, 218, 298
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	4 cut(s)	62, 75, 226, 293
BspTNI	GGTCTC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	137
BsrFI	RCCGGY	1 cut(s)	261
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	3 cut(s)	67, 218, 298
Bst2UI	CCWGG	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	70, 221, 301
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	3 cut(s)	67, 218, 298
BstNI	CCWGG	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	170
BstX2I	RGATCY	2 cut(s)	67, 218
BstYI	RGATCY	2 cut(s)	67, 218
BtrI	CACGTC	1 cut(s)	242
BtsCI	GGATG	1 cut(s)	139
Cfr10I	RCCGGY	1 cut(s)	261
Csp6I	GTAC	1 cut(s)	93
CspAI	ACCGGT	1 cut(s)	261
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	3 cut(s)	56, 111, 130
CviKI_1	RGCY	3 cut(s)	56, 111, 130
CviQI	GTAC	1 cut(s)	93
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	69, 220, 300
DpnII	GATC	3 cut(s)	67, 218, 298
Eco31I	GGTCTC	1 cut(s)	282
Eco91I	GGTNACC	1 cut(s)	257
EcoO65I	GGTNACC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	113
EcoT22I	ATGCAT	2 cut(s)	139, 310
FaeI	CATG	1 cut(s)	61
FatI	CATG	1 cut(s)	57
FauNDI	CATATG	2 cut(s)	289, 304
Fnu4HI	GCNGC	1 cut(s)	159
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	159
GluI	GCNGC	1 cut(s)	159
HapII	CCGG	1 cut(s)	262
Hin1II	CATG	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	172, 283
HpaII	CCGG	1 cut(s)	262
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	95, 236
Hpy188I	TCNGA	2 cut(s)	271, 282
Hpy188III	TCNNGA	2 cut(s)	45, 216
Hpy8I	GTNNAC	2 cut(s)	95, 236
HpyAV	CCTTC	2 cut(s)	255, 266
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	137, 158, 178, 193, 308
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	67, 218, 298
LpnPI	CCDG	4 cut(s)	100, 116, 127, 275
Lsp1109I	GCAGC	1 cut(s)	170
LweI	GCATC	1 cut(s)	124
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	3 cut(s)	69, 220, 300
MboI	GATC	3 cut(s)	67, 218, 298
MboII	GAAGA	1 cut(s)	36
MflI	RGATCY	2 cut(s)	67, 218
MluCI	AATT	1 cut(s)	187
MnlI	CCTC	3 cut(s)	58, 78, 223
Mph1103I	ATGCAT	2 cut(s)	139, 310
MseI	TTAA	2 cut(s)	33, 316
MslI	CAYNNNNRTG	1 cut(s)	56
MspI	CCGG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
NdeI	CATATG	2 cut(s)	289, 304
NdeII	GATC	3 cut(s)	67, 218, 298
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	257
NsiI	ATGCAT	2 cut(s)	139, 310
PfeI	GAWTC	2 cut(s)	172, 283
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	69
PsuI	RGATCY	2 cut(s)	67, 218
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	33, 316
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	3 cut(s)	67, 218, 298
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	2 cut(s)	132, 244
SfaNI	GCATC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	113
TaiI	ACGT	1 cut(s)	244
TasI	AATT	1 cut(s)	187
TatI	WGTACW	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	172, 283
Tru1I	TTAA	2 cut(s)	33, 316
Tru9I	TTAA	2 cut(s)	33, 316
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	187
Zsp2I	ATGCAT	2 cut(s)	139, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.