Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

50543618 .. 50544821

Gene Structure 1204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20349

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGAAGTTGAAACTGGTAATGGGAAGAACTATTAAAAGGAAATCAAGAAGCACAGTCATGTTTGAGGATCCAAGAAAACTTAAGAGGACAAGTACACCAAAAGTCAAAAGCCCCAGGAGTGTAGTCAAGGGAGAGGGTCAACCACGTCCTTCAAAAATCGGTGACCGGTTTTCAGAAGGGTCTCTGAATCCGTATGCTGATGATCCATATGCATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

73

Amino Acids

8.3

Weight (kDa)

10.44

Isoelectric Point (pI)

42.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	62, 75, 197
AfaI	GTAC	1 cut(s)	94
AflII	CTTAAG	1 cut(s)	80
AgeI	ACCGGT	1 cut(s)	165
AgsI	TTSAA	2 cut(s)	10, 153
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	113
Alw26I	GTCTC	1 cut(s)	186
AlwI	GGATC	3 cut(s)	62, 75, 197
AsiGI	ACCGGT	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	186
BfrI	CTTAAG	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	115
BmgBI	CACGTC	1 cut(s)	146
BmiI	GGNNCC	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	115
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	113
BsaWI	WCCGGW	1 cut(s)	165
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	18
BshTI	ACCGGT	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	67, 202
BspLI	GGNNCC	1 cut(s)	69
BspPI	GGATC	3 cut(s)	62, 75, 197
BspTI	CTTAAG	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	186
BsrFI	RCCGGY	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	18
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	2 cut(s)	67, 202
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	55
BstAFI	CTTAAG	1 cut(s)	80
BstEII	GGTNACC	1 cut(s)	161
BstKTI	GATC	2 cut(s)	70, 205
BstMAI	GTCTC	1 cut(s)	186
BstMBI	GATC	2 cut(s)	67, 202
BstNI	CCWGG	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	93
CspAI	ACCGGT	1 cut(s)	165
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	1 cut(s)	111
CviKI_1	RGCY	1 cut(s)	111
CviQI	GTAC	1 cut(s)	93
DpnI	GATC	2 cut(s)	69, 204
DpnII	GATC	2 cut(s)	67, 202
Eco31I	GGTCTC	1 cut(s)	186
Eco91I	GGTNACC	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	113
EcoT22I	ATGCAT	1 cut(s)	214
FaeI	CATG	1 cut(s)	61
FaiI	YATR	4 cut(s)	59, 195, 208, 210
FatI	CATG	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	208
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	140
HindII	GTYRAC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	187
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	95, 140
Hpy188I	TCNGA	2 cut(s)	175, 186
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	2 cut(s)	95, 140
HpyAV	CCTTC	2 cut(s)	159, 170
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	212
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	67, 202
LpnPI	CCDG	3 cut(s)	100, 127, 179
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	2 cut(s)	69, 204
MboI	GATC	2 cut(s)	67, 202
MboII	GAAGA	1 cut(s)	36
MflI	RGATCY	1 cut(s)	67
MnlI	CCTC	3 cut(s)	58, 78, 127
Mph1103I	ATGCAT	1 cut(s)	214
MseI	TTAA	3 cut(s)	33, 81, 220
MslI	CAYNNNNRTG	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	80
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	115
NdeI	CATATG	1 cut(s)	208
NdeII	GATC	2 cut(s)	67, 202
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	69
NmuCI	GTSAC	1 cut(s)	161
NsiI	ATGCAT	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	187
PinAI	ACCGGT	1 cut(s)	165
Psp6I	CCWGG	1 cut(s)	113
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	67
RsaI	GTAC	1 cut(s)	94
RsaNI	GTAC	1 cut(s)	93
RseI	CAYNNNNRTG	1 cut(s)	56
SaqAI	TTAA	3 cut(s)	33, 81, 220
Sau3AI	GATC	2 cut(s)	67, 202
ScrFI	CCNGG	1 cut(s)	115
SetI	ASST	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	3 cut(s)	33, 81, 220
Tru9I	TTAA	3 cut(s)	33, 81, 220
TseFI	GTSAC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	180
Vha464I	CTTAAG	1 cut(s)	80
Zsp2I	ATGCAT	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.