Synaptonemal complex protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 39 |
| AclWI | GGATC | 2 cut(s) | 1528, 1668 |
| AcsI | RAATTY | 3 cut(s) | 738, 1354, 1498 |
| AcuI | CTGAAG | 6 cut(s) | 716, 840, 885, 1454, 1604, 1631 |
| AfaI | GTAC | 3 cut(s) | 781, 951, 1138 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 792, 1581 |
| AflIII | ACRYGT | 1 cut(s) | 654 |
| AjnI | CCWGG | 1 cut(s) | 162 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 359, 391, 788, 820 |
| AleI | CACNNNNGTG | 1 cut(s) | 12 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| Alw26I | GTCTC | 3 cut(s) | 83, 625, 835 |
| AlwI | GGATC | 2 cut(s) | 1528, 1668 |
| ApeKI | GCWGC | 4 cut(s) | 500, 1169, 1420, 1451 |
| ApoI | RAATTY | 3 cut(s) | 738, 1354, 1498 |
| AseI | ATTAAT | 1 cut(s) | 1284 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 41 |
| AspLEI | GCGC | 1 cut(s) | 1456 |
| AsuHPI | GGTGA | 2 cut(s) | 79, 392 |
| BbsI | GAAGAC | 1 cut(s) | 1460 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BbvI | GCAGC | 4 cut(s) | 487, 1156, 1432, 1438 |
| BccI | CCATC | 4 cut(s) | 221, 423, 1016, 1327 |
| BciT130I | CCWGG | 1 cut(s) | 164 |
| BclI | TGATCA | 2 cut(s) | 121, 640 |
| BcoDI | GTCTC | 3 cut(s) | 83, 625, 835 |
| BfaI | CTAG | 6 cut(s) | 266, 953, 1061, 1179, 1232, 1416 |
| BfmI | CTRYAG | 1 cut(s) | 354 |
| BglII | AGATCT | 1 cut(s) | 607 |
| BisI | GCNGC | 4 cut(s) | 501, 1170, 1421, 1452 |
| BlsI | GCNGC | 4 cut(s) | 502, 1171, 1422, 1453 |
| BmcAI | AGTACT | 1 cut(s) | 951 |
| Bme1390I | CCNGG | 1 cut(s) | 164 |
| BmrFI | CCNGG | 1 cut(s) | 164 |
| BmsI | GCATC | 4 cut(s) | 157, 673, 1166, 1419 |
| BpiI | GAAGAC | 1 cut(s) | 1460 |
| BpmI | CTGGAG | 1 cut(s) | 1340 |
| BpuEI | CTTGAG | 2 cut(s) | 482, 1238 |
| BsaBI | GATNNNNATC | 1 cut(s) | 414 |
| BsaI | GGTCTC | 1 cut(s) | 835 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 792, 1581 |
| Bse1I | ACTGG | 2 cut(s) | 210, 586 |
| Bse8I | GATNNNNATC | 1 cut(s) | 414 |
| BseBI | CCWGG | 1 cut(s) | 164 |
| BseGI | GGATG | 3 cut(s) | 9, 172, 1157 |
| BseJI | GATNNNNATC | 1 cut(s) | 414 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 792, 1581 |
| BseMII | CTCAG | 5 cut(s) | 162, 903, 951, 960, 1595 |
| BseNI | ACTGG | 2 cut(s) | 210, 586 |
| BseRI | GAGGAG | 4 cut(s) | 398, 1694, 1751, 1754 |
| BseXI | GCAGC | 4 cut(s) | 487, 1156, 1432, 1438 |
| BsgI | GTGCAG | 3 cut(s) | 234, 486, 632 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 792, 1581 |
| BsmAI | GTCTC | 3 cut(s) | 83, 625, 835 |
| BsmI | GAATGC | 1 cut(s) | 1406 |
| Bso31I | GGTCTC | 1 cut(s) | 835 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp1407I | TGTACA | 1 cut(s) | 779 |
| Bsp143I | GATC | 7 cut(s) | 121, 250, 409, 607, 640, 1533, 1660 |
| BspCNI | CTCAG | 5 cut(s) | 163, 904, 952, 959, 1596 |
| BspPI | GGATC | 2 cut(s) | 1528, 1668 |
| BspTNI | GGTCTC | 1 cut(s) | 835 |
| BsrGI | TGTACA | 1 cut(s) | 779 |
| BsrI | ACTGG | 2 cut(s) | 210, 586 |
| BssMI | GATC | 7 cut(s) | 121, 250, 409, 607, 640, 1533, 1660 |
| Bst2UI | CCWGG | 1 cut(s) | 164 |
| Bst4CI | ACNGT | 4 cut(s) | 636, 1239, 1266, 1517 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1429 |
| BstAUI | TGTACA | 1 cut(s) | 779 |
| BstC8I | GCNNGC | 2 cut(s) | 580, 1046 |
| BstDEI | CTNAG | 9 cut(s) | 57, 93, 148, 171, 419, 912, 946, 960, 1604 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1579 |
| BstF5I | GGATG | 3 cut(s) | 9, 172, 1157 |
| BstHHI | GCGC | 1 cut(s) | 1456 |
| BstKTI | GATC | 7 cut(s) | 124, 253, 412, 610, 643, 1536, 1663 |
| BstMAI | GTCTC | 3 cut(s) | 83, 625, 835 |
| BstMBI | GATC | 7 cut(s) | 121, 250, 409, 607, 640, 1533, 1660 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 509, 1429 |
| BstNI | CCWGG | 1 cut(s) | 164 |
| BstNSI | RCATGY | 4 cut(s) | 582, 658, 1436, 1451 |
| BstSCI | CCNGG | 1 cut(s) | 162 |
| BstSFI | CTRYAG | 1 cut(s) | 354 |
| BstV1I | GCAGC | 4 cut(s) | 487, 1156, 1432, 1438 |
| BstV2I | GAAGAC | 1 cut(s) | 1460 |
| BstX2I | RGATCY | 3 cut(s) | 607, 1533, 1660 |
| BstYI | RGATCY | 3 cut(s) | 607, 1533, 1660 |
| BtsCI | GGATG | 3 cut(s) | 9, 172, 1157 |
| BtsI | GCAGTG | 1 cut(s) | 1715 |
| BtsIMutI | CAGTG | 4 cut(s) | 217, 1271, 1522, 1715 |
| Cac8I | GCNNGC | 2 cut(s) | 580, 1046 |
| CfoI | GCGC | 1 cut(s) | 1456 |
| Csp6I | GTAC | 3 cut(s) | 780, 950, 1137 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1691, 1726 |
| CviQI | GTAC | 3 cut(s) | 780, 950, 1137 |
| DdeI | CTNAG | 9 cut(s) | 57, 93, 148, 171, 419, 912, 946, 960, 1604 |
| DpnI | GATC | 7 cut(s) | 123, 252, 411, 609, 642, 1535, 1662 |
| DpnII | GATC | 7 cut(s) | 121, 250, 409, 607, 640, 1533, 1660 |
| DraI | TTTAAA | 3 cut(s) | 193, 534, 1503 |
| Eco31I | GGTCTC | 1 cut(s) | 835 |
| Eco57I | CTGAAG | 6 cut(s) | 716, 840, 885, 1454, 1604, 1631 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1579 |
| EcoRII | CCWGG | 1 cut(s) | 162 |
| EcoT22I | ATGCAT | 1 cut(s) | 1434 |
| FbaI | TGATCA | 2 cut(s) | 121, 640 |
| Fnu4HI | GCNGC | 4 cut(s) | 501, 1170, 1421, 1452 |
| FokI | GGATG | 2 cut(s) | 179, 1144 |
| Fsp4HI | GCNGC | 4 cut(s) | 501, 1170, 1421, 1452 |
| FspBI | CTAG | 6 cut(s) | 266, 953, 1061, 1179, 1232, 1416 |
| GlaI | GCGC | 1 cut(s) | 1455 |
| GluI | GCNGC | 4 cut(s) | 501, 1170, 1421, 1452 |
| GsuI | CTGGAG | 1 cut(s) | 1340 |
| HhaI | GCGC | 1 cut(s) | 1456 |
| Hin6I | GCGC | 1 cut(s) | 1454 |
| HinP1I | GCGC | 1 cut(s) | 1454 |
| HindIII | AAGCTT | 2 cut(s) | 620, 1643 |
| HinfI | GANTC | 8 cut(s) | 185, 269, 292, 305, 746, 884, 1108, 1412 |
| HphI | GGTGA | 2 cut(s) | 79, 392 |
| Hpy166II | GTNNAC | 2 cut(s) | 1226, 1520 |
| Hpy188I | TCNGA | 5 cut(s) | 676, 735, 865, 895, 913 |
| Hpy8I | GTNNAC | 2 cut(s) | 1226, 1520 |
| HpyAV | CCTTC | 4 cut(s) | 73, 473, 763, 1027 |
| HpyCH4III | ACNGT | 4 cut(s) | 636, 1239, 1266, 1517 |
| HpyCH4IV | ACGT | 1 cut(s) | 39 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 509, 1429 |
| HpyF3I | CTNAG | 9 cut(s) | 57, 93, 148, 171, 419, 912, 946, 960, 1604 |
| HpySE526I | ACGT | 1 cut(s) | 39 |
| HspAI | GCGC | 1 cut(s) | 1454 |
| Ksp22I | TGATCA | 2 cut(s) | 121, 640 |
| Kzo9I | GATC | 7 cut(s) | 121, 250, 409, 607, 640, 1533, 1660 |
| LmnI | GCTCC | 2 cut(s) | 4, 1741 |
| Lsp1109I | GCAGC | 4 cut(s) | 487, 1156, 1432, 1438 |
| LweI | GCATC | 4 cut(s) | 157, 673, 1166, 1419 |
| MaeI | CTAG | 6 cut(s) | 266, 953, 1061, 1179, 1232, 1416 |
| MaeII | ACGT | 1 cut(s) | 39 |
| MalI | GATC | 7 cut(s) | 123, 252, 411, 609, 642, 1535, 1662 |
| MboI | GATC | 7 cut(s) | 121, 250, 409, 607, 640, 1533, 1660 |
| MfeI | CAATTG | 2 cut(s) | 692, 1703 |
| MflI | RGATCY | 3 cut(s) | 607, 1533, 1660 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MlyI | GAGTC | 3 cut(s) | 194, 278, 755 |
| MmeI | TCCRAC | 3 cut(s) | 372, 786, 1561 |
| Mph1103I | ATGCAT | 1 cut(s) | 1434 |
| MroXI | GAANNNNTTC | 1 cut(s) | 41 |
| MslI | CAYNNNNRTG | 2 cut(s) | 12, 1629 |
| MspR9I | CCNGG | 1 cut(s) | 164 |
| MssI | GTTTAAAC | 1 cut(s) | 534 |
| MunI | CAATTG | 2 cut(s) | 692, 1703 |
| Mva1269I | GAATGC | 1 cut(s) | 1406 |
| MvaI | CCWGG | 1 cut(s) | 164 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 509, 1429 |
| NdeII | GATC | 7 cut(s) | 121, 250, 409, 607, 640, 1533, 1660 |
| NsiI | ATGCAT | 1 cut(s) | 1434 |
| NspI | RCATGY | 4 cut(s) | 582, 658, 1436, 1451 |
| OliI | CACNNNNGTG | 1 cut(s) | 12 |
| PaeI | GCATGC | 1 cut(s) | 582 |
| PciI | ACATGT | 1 cut(s) | 654 |
| PctI | GAATGC | 1 cut(s) | 1406 |
| PdmI | GAANNNNTTC | 1 cut(s) | 41 |
| PfeI | GAWTC | 5 cut(s) | 292, 305, 884, 1108, 1412 |
| PfoI | TCCNGGA | 1 cut(s) | 162 |
| PkrI | GCNGC | 4 cut(s) | 502, 1171, 1422, 1453 |
| PleI | GAGTC | 3 cut(s) | 193, 277, 754 |
| PmeI | GTTTAAAC | 1 cut(s) | 534 |
| PpsI | GAGTC | 3 cut(s) | 193, 277, 754 |
| PscI | ACATGT | 1 cut(s) | 654 |
| PshBI | ATTAAT | 1 cut(s) | 1284 |
| Psp1406I | AACGTT | 1 cut(s) | 39 |
| Psp6I | CCWGG | 1 cut(s) | 162 |
| PspGI | CCWGG | 1 cut(s) | 162 |
| PsuI | RGATCY | 3 cut(s) | 607, 1533, 1660 |
| RsaI | GTAC | 3 cut(s) | 781, 951, 1138 |
| RsaNI | GTAC | 3 cut(s) | 780, 950, 1137 |
| RseI | CAYNNNNRTG | 2 cut(s) | 12, 1629 |
| SatI | GCNGC | 4 cut(s) | 501, 1170, 1421, 1452 |
| Sau3AI | GATC | 7 cut(s) | 121, 250, 409, 607, 640, 1533, 1660 |
| ScaI | AGTACT | 1 cut(s) | 951 |
| SchI | GAGTC | 3 cut(s) | 194, 278, 755 |
| ScrFI | CCNGG | 1 cut(s) | 164 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SfaNI | GCATC | 4 cut(s) | 157, 673, 1166, 1419 |
| SfcI | CTRYAG | 1 cut(s) | 354 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 12, 1629 |
| SmlI | CTYRAG | 2 cut(s) | 461, 1217 |
| SmoI | CTYRAG | 2 cut(s) | 461, 1217 |
| SphI | GCATGC | 1 cut(s) | 582 |
| SspMI | CTAG | 6 cut(s) | 266, 953, 1061, 1179, 1232, 1416 |
| StyD4I | CCNGG | 1 cut(s) | 162 |
| TaaI | ACNGT | 4 cut(s) | 636, 1239, 1266, 1517 |
| TaiI | ACGT | 1 cut(s) | 42 |
| TaqI | TCGA | 1 cut(s) | 552 |
| TatI | WGTACW | 3 cut(s) | 779, 949, 1136 |
| TfiI | GAWTC | 5 cut(s) | 292, 305, 884, 1108, 1412 |
| TscAI | CASTG | 4 cut(s) | 217, 1271, 1522, 1715 |
| TseI | GCWGC | 4 cut(s) | 500, 1169, 1420, 1451 |
| TspDTI | ATGAA | 7 cut(s) | 63, 260, 479, 1040, 1121, 1602, 1608 |
| TspGWI | ACGGA | 1 cut(s) | 146 |
| TspRI | CASTG | 4 cut(s) | 217, 1271, 1522, 1715 |
| VspI | ATTAAT | 1 cut(s) | 1284 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1579 |
| XapI | RAATTY | 3 cut(s) | 738, 1354, 1498 |
| XceI | RCATGY | 4 cut(s) | 582, 658, 1436, 1451 |
| XmnI | GAANNNNTTC | 1 cut(s) | 41 |
| XspI | CTAG | 6 cut(s) | 266, 953, 1061, 1179, 1232, 1416 |
| ZrmI | AGTACT | 1 cut(s) | 951 |
| Zsp2I | ATGCAT | 1 cut(s) | 1434 |