Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004132.1

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

3068 .. 3649

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004132.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

atgatgagtttcattctgtctcaggaatactctatttcgtcaaggagaaaccctattgtgagaaggagaggtcagcgctctctaagaagaccgaagcatgatgagaaggattcacctctagcgggagcaacacaaacaccagtgtcaacactgttgaagaaagcttccgagaatatgaattcaccaagtgtaatgaatatttcaaagcaccttaaaaaggtaattcgggacgaatatgaagttgaaactggtaatgggaagaactattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

89

Amino Acids

10.19

Weight (kDa)

10.22

Isoelectric Point (pI)

72.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	178
AdeI	CACNNNGTG	1 cut(s)	188
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	122, 217
AgsI	TTSAA	3 cut(s)	157, 204, 245
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	24
Aor51HI	AGCGCT	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	105, 174
BbsI	GAAGAC	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 217
Bse1I	ACTGG	2 cut(s)	140, 253
BseLI	CCNNNNNNNGG	2 cut(s)	122, 217
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	2 cut(s)	140, 253
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	122, 217
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	242
BspACI	CCGC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	140, 253
Bst4CI	ACNGT	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	21, 83
BstENI	CCTNNNNNAGG	1 cut(s)	215
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstMAI	GTCTC	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	94
BtsIMutI	CAGTG	2 cut(s)	147, 149
CfoI	GCGC	1 cut(s)	78
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	1 cut(s)	164
CviKI_1	RGCY	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	21, 83
DraIII	CACNNNGTG	1 cut(s)	188
Eco47III	AGCGCT	1 cut(s)	77
EcoNI	CCTNNNNNAGG	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	101
FaiI	YATR	3 cut(s)	99, 176, 237
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	79
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	1 cut(s)	110
HphI	GGTGA	2 cut(s)	105, 174
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	23, 227
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	2 cut(s)	57, 100
HpyCH4III	ACNGT	1 cut(s)	153
HpyF3I	CTNAG	2 cut(s)	21, 83
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	76
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	3 cut(s)	8, 153, 234
MaeI	CTAG	1 cut(s)	119
MboII	GAAGA	2 cut(s)	99, 169
MluCI	AATT	2 cut(s)	178, 222
MnlI	CCTC	2 cut(s)	62, 126
MseI	TTAA	2 cut(s)	213, 268
NlaIII	CATG	1 cut(s)	101
PfeI	GAWTC	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	213, 268
SetI	ASST	5 cut(s)	73, 118, 166, 213, 222
Sse9I	AATT	2 cut(s)	178, 222
SsiI	CCGC	1 cut(s)	122
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	1 cut(s)	119
TaaI	ACNGT	1 cut(s)	153
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	2 cut(s)	178, 222
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	213, 268
Tru9I	TTAA	2 cut(s)	213, 268
TscAI	CASTG	2 cut(s)	147, 156
TspDTI	ATGAA	3 cut(s)	191, 209, 252
TspRI	CASTG	2 cut(s)	147, 156
XagI	CCTNNNNNAGG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	178
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.