Rh2CG397000

ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000742
Physical Location & Seq
Forward (+)
53945417 .. 53970807
25391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG397000.1

Sequence Viewer

Length: 567 bp
ATGTTGTCGTTGACCATTGCTGATTCACAACAAGATTCACCTCTAGTAGGAGCATCACAAACACCAGTGTCAACACTATTGAAGAAAGCTTCGGAGAATATGAATTCACCAAATGTAATTAATATTTCAAAGCACCAAAAAAAGGTCATTTGTGATGAATATGAAGTTGAAACTGGTAATGGAAGAACTATTAAACGGAAAACAAGAAGCACAGTCATGTTTGAGGAGGGCCAGCTTAAAGGACAGTCAACAGTTAGCAGAACAACAGCTTTTAAGGTCTTTGCAATATGCAACACAGCAGCACTTTTCATATCTATGTGCATTGTCTTTGTCTTGGTCAACAGCATTCCCTTCCGGCGAAAACCACTAATGAAACTACTGGTGGTTGCTCACAAAGTAATGTGGGTGGCGGTGTTACGAATGGCCACAGCTTATGTCGCAGCCATGTGGATGATCATGCCACACGGTGAAGGTGTAAATTGGACCCTTGAAGTAGTGATATCTGTGTGTGCAGGGACTATGGGATCTGTTTTTTTATTCCTTGGTGTCACATGGACCAGACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 Ank_4 Ank_5 PGG

Protein Analysis

188

Amino Acids

20.81

Weight (kDa)

9.69

Isoelectric Point (pI)

31.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGG PF13962 78 - 151 3.2e-15 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 410
AclWI GGATC 1 cut(s) 532
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 1 cut(s) 103
AdeI CACNNNGTG 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 47, 142
AgsI TTSAA 4 cut(s) 82, 129, 170, 491
AluBI AGCT 4 cut(s) 89, 235, 269, 431
AluI AGCT 4 cut(s) 89, 235, 269, 431
AlwI GGATC 1 cut(s) 532
AoxI GGCC 2 cut(s) 229, 423
ApeKI GCWGC 2 cut(s) 299, 440
ApoI RAATTY 1 cut(s) 103
AseI ATTAAT 1 cut(s) 120
AspS9I GGNCC 3 cut(s) 229, 483, 555
AsuHPI GGTGA 3 cut(s) 30, 99, 479
AvaII GGWCC 2 cut(s) 483, 555
BalI TGGCCA 1 cut(s) 425
BbvI GCAGC 2 cut(s) 311, 452
BclI TGATCA 1 cut(s) 453
BfaI CTAG 2 cut(s) 44, 565
BisI GCNGC 2 cut(s) 300, 441
BlsI GCNGC 2 cut(s) 301, 442
Bme18I GGWCC 2 cut(s) 483, 555
BmgT120I GGNCC 3 cut(s) 229, 483, 555
BmiI GGNNCC 1 cut(s) 485
BmsI GCATC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 541
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 142
Bse1I ACTGG 3 cut(s) 65, 178, 384
Bse3DI GCAATG 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 541
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 47, 142
BseMI GCAATG 1 cut(s) 15
BseNI ACTGG 3 cut(s) 65, 178, 384
BseRI GAGGAG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 311, 452
BsgI GTGCAG 1 cut(s) 531
BshFI GGCC 2 cut(s) 231, 425
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 2 cut(s) 47, 142
BsmFI GGGAC 1 cut(s) 529
BsmI GAATGC 1 cut(s) 345
BsnI GGCC 2 cut(s) 231, 425
Bsp143I GATC 2 cut(s) 453, 524
BspACI CCGC 1 cut(s) 410
BspANI GGCC 2 cut(s) 231, 425
BspLI GGNNCC 1 cut(s) 485
BspPI GGATC 1 cut(s) 532
BsrDI GCAATG 1 cut(s) 15
BsrI ACTGG 3 cut(s) 65, 178, 384
BssECI CCNNGG 1 cut(s) 541
BssMI GATC 2 cut(s) 453, 524
BssT1I CCWWGG 1 cut(s) 541
Bst4CI ACNGT 4 cut(s) 214, 246, 253, 467
BstC8I GCNNGC 1 cut(s) 233
BstENI CCTNNNNNAGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 2 cut(s) 456, 527
BstMBI GATC 2 cut(s) 453, 524
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstV1I GCAGC 2 cut(s) 311, 452
BstX2I RGATCY 1 cut(s) 524
BstYI RGATCY 1 cut(s) 524
BsuRI GGCC 2 cut(s) 231, 425
BtsCI GGATG 1 cut(s) 456
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 1 cut(s) 233
Cfr13I GGNCC 3 cut(s) 229, 483, 555
CviAII CATG 4 cut(s) 217, 445, 457, 552
CviJI RGCY 7 cut(s) 89, 231, 235, 269, 425, 431, 443
CviKI_1 RGCY 7 cut(s) 89, 231, 235, 269, 425, 431, 443
DpnI GATC 2 cut(s) 455, 526
DpnII GATC 2 cut(s) 453, 524
DraIII CACNNNGTG 1 cut(s) 467
EaeI YGGCCR 1 cut(s) 423
Eco130I CCWWGG 1 cut(s) 541
Eco32I GATATC 1 cut(s) 501
Eco47I GGWCC 2 cut(s) 483, 555
EcoNI CCTNNNNNAGG 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 103
EcoRV GATATC 1 cut(s) 501
EcoT14I CCWWGG 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 541
FaeI CATG 4 cut(s) 220, 448, 460, 555
FaqI GGGAC 1 cut(s) 529
FatI CATG 4 cut(s) 216, 444, 456, 551
FbaI TGATCA 1 cut(s) 453
Fnu4HI GCNGC 2 cut(s) 300, 441
FokI GGATG 1 cut(s) 463
Fsp4HI GCNGC 2 cut(s) 300, 441
FspBI CTAG 2 cut(s) 44, 565
GluI GCNGC 2 cut(s) 300, 441
HaeIII GGCC 2 cut(s) 231, 425
HapII CCGG 1 cut(s) 355
Hin1II CATG 4 cut(s) 220, 448, 460, 555
HincII GTYRAC 4 cut(s) 12, 72, 249, 340
HindII GTYRAC 4 cut(s) 12, 72, 249, 340
HindIII AAGCTT 1 cut(s) 87
HinfI GANTC 2 cut(s) 23, 35
HpaII CCGG 1 cut(s) 355
HphI GGTGA 3 cut(s) 30, 99, 479
Hpy166II GTNNAC 4 cut(s) 12, 72, 249, 340
Hpy188I TCNGA 1 cut(s) 94
Hpy8I GTNNAC 4 cut(s) 12, 72, 249, 340
HpyAV CCTTC 2 cut(s) 361, 464
HpyCH4III ACNGT 4 cut(s) 214, 246, 253, 467
HpyCH4V TGCA 4 cut(s) 284, 291, 321, 512
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
Hsp92II CATG 4 cut(s) 220, 448, 460, 555
Ksp22I TGATCA 1 cut(s) 453
Kzo9I GATC 2 cut(s) 453, 524
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 6 cut(s) 78, 159, 245, 365, 368, 498
Lsp1109I GCAGC 2 cut(s) 311, 452
LweI GCATC 1 cut(s) 62
MaeI CTAG 2 cut(s) 44, 565
MaeIII GTNAC 2 cut(s) 414, 547
MalI GATC 2 cut(s) 455, 526
MboI GATC 2 cut(s) 453, 524
MboII GAAGA 2 cut(s) 94, 195
MflI RGATCY 1 cut(s) 524
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 3 cut(s) 103, 117, 478
MluNI TGGCCA 1 cut(s) 425
MnlI CCTC 3 cut(s) 51, 217, 220
Mox20I TGGCCA 1 cut(s) 425
MscI TGGCCA 1 cut(s) 425
MseI TTAA 4 cut(s) 120, 192, 237, 273
MslI CAYNNNNRTG 3 cut(s) 215, 314, 449
Msp20I TGGCCA 1 cut(s) 425
MspI CCGG 1 cut(s) 355
Mva1269I GAATGC 1 cut(s) 345
MwoI GCNNNNNNNGC 1 cut(s) 437
NdeII GATC 2 cut(s) 453, 524
NlaIII CATG 4 cut(s) 220, 448, 460, 555
NlaIV GGNNCC 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 547
PctI GAATGC 1 cut(s) 345
PfeI GAWTC 2 cut(s) 23, 35
PkrI GCNGC 2 cut(s) 301, 442
PshBI ATTAAT 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 485
PspPI GGNCC 3 cut(s) 229, 483, 555
PsuI RGATCY 1 cut(s) 524
RseI CAYNNNNRTG 3 cut(s) 215, 314, 449
SaqAI TTAA 4 cut(s) 120, 192, 237, 273
SatI GCNGC 2 cut(s) 300, 441
Sau3AI GATC 2 cut(s) 453, 524
Sau96I GGNCC 3 cut(s) 229, 483, 555
SetI ASST 8 cut(s) 43, 91, 147, 237, 271, 279, 433, 475
SfaNI GCATC 1 cut(s) 62
SinI GGWCC 2 cut(s) 483, 555
SmiMI CAYNNNNRTG 3 cut(s) 215, 314, 449
Sse9I AATT 3 cut(s) 103, 117, 478
SsiI CCGC 1 cut(s) 410
SspI AATATT 1 cut(s) 124
SspMI CTAG 2 cut(s) 44, 565
StyI CCWWGG 1 cut(s) 541
TaaI ACNGT 4 cut(s) 214, 246, 253, 467
TasI AATT 3 cut(s) 103, 117, 478
TfiI GAWTC 2 cut(s) 23, 35
Tru1I TTAA 4 cut(s) 120, 192, 237, 273
Tru9I TTAA 4 cut(s) 120, 192, 237, 273
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 2 cut(s) 299, 440
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 5 cut(s) 116, 171, 177, 298, 386
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 72
VpaK11BI GGWCC 2 cut(s) 483, 555
VspI ATTAAT 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 45
XapI RAATTY 1 cut(s) 103
XspI CTAG 2 cut(s) 44, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.