pycom15g33040

Synaptonemal complex protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
32367649 .. 32373193
5545 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g33040.6

Sequence Viewer

Length: 2391 bp
ATGCAAAAGCTAGGGTTTCCGGGCATGAGGAACTTGGATCAATTCAAGTCCCTCTCCAAATCGGTTTCAGGAGCTCCGAAGATATTCTCTTACTCTTCGCGTCCTCCAGATTCGATCGCTTCGGGAAGCTTCGCAAATTTGAAGCTCACTGGTATCTCTCTCTCTCTCTCTCTCTCTGTTTCTCTCTCTATCGATCACTCTCTCTCTACCTGTGCGTGTGAATGTATGATTGTGCATTTGTGCGGTTTGATTTTTGTGTCTCACAATCTGCTTCGATTAGTTAGGAACAATAAGCTGAAAAAATCAGTGGAGCATATTCGTGCATTAGAGGAAAAATTGCAGAATGCTTTCAATGAAAATGCTAAGCTTAAGGTGAAGCAGAAGGAAGACGAAAAGATGTGGAAAGGATTGGAGTCTAAGTTTTCTTCAACGAAAACTCTGTGCGATCAACTGACTGAAACTTTGCAGCTTTTAGCTGGTCAGGTTCAGGATGCTGAGAAAGATAAGGAGTCCTTTGAATGCAAACTCTCTGCAAGTTCCATAGCTCTTGACGGTTTAAATCAGCAGATGGATGGTCTATCTCTAAAATTAGAGTCTGCAGAGGAACTTATAAGGAACCATGCCATGCTTAAGAACTTTGAGGCAACTCTAGCAACTAATAGGTTGGCAACAGAGAGTTTGAACTCTAAGTTGGGTGAGGTGCAGCTTGAGTTAAAGTTAAAAGAGGATGAAATTAAACGTTTGATAACTGCTCAGGAGAACTTGGAAATGGAAAAACACAATGTTCAGTTGAGCAACGATGACCTTGTTAAGAGATTAGATATGTCAGTCCTTGAGATAAGAAACCTTGAAGGGTTCGTTCATGTGTTGGCCGCACACCTGGCTGAATTGGATAAACAAAGTTTGGATTTTCTTGACAAGTTTGATAAGCTAAACTCTCTCTACGACACTTGCTTCAAGATGGTCCAGCAGGAGAGAGACCTTTGTGCCAAGCTTGCTCAGAGACAGTATGATCAACTGCATGATGCATTTCTGAAAATAACATCAGAAAAAGATGCTATACAATTGCTAAATCAGGAGTTGAACAATAAGGTCATCGAACTTCAGAAAGTTCAGGAGTCTGTTATGGCACAACTATCAGAGGAATGCAGTATAGCCAGAGAGAGGATAGAGAATTTGGAGTCTGAAGCAGAGATTCAGGTCTCAAAGAAGATTGAAACAGAGATGGTGGTCTCCAAATTAGAACTGCAAATTCATTCTCTGTCAGAAAGTTTAAGATTGTCGGAGAATAAAATGCAAGATCTGTTGCTGAAAATGTCAGCTTTAGAAACTGAGAATAAAGATAATACAGAGAAATTACAAGCAGAGATACAGAAAAAAGATGAACAAATAGACGGTCTACTAAGGGAAGGTGAAAAACATGAAGAGCAAGTGGATCTGATGGATAAACAAGTCAACCAGCTCCAGAGCACGCTAGAGGAAAAGGAGCAACTTATTCTGGAATATAAGGAACGAGAGAAGAATCTTGAAGAACAGATTTCAGAGAACAAGGCATTGTTGACTGCTGCTGAAAGTAGACTTGTGGAAGATAAGAAGCAATATGATCTCATGCTAGAGAGTAAACAACTGGAATTATCAAGGCATTTGAAAGATATCTCTAAGAGGAATGATCAGGCAATTAATGACATCCGGAAGAAGTATGAGGTCGAGAAGCTGGAGATAGTTAACATGGAAAAGGAAAAGGCTGAAAAACTTGTTGGAGAAAGGGAGAAAGAATGTGAGAAAAAACTTGAAGAATGCAAAGAAGAATCGAGGCAGTACTTGATGCGCGTTCAGGAGGAACACGCTACTCTGGTCAGTCGCATTCAGCAGGAACATGATAGGAAGGAACTGAGTCTAAAATCTGAACACAGCGAAGAGCTAAAGCATTTCCAACTGCAAGCTGAAAACGAATTAAGAGAGAAAATAACTTCAACAAGGAGCGAACATGAAGCCGAGCTGAGAGGTTTGAGGCTTCAGCATGAAGATGAGTGTAGAAAGCTGCAGGGTGAATTGGATCTTCAAAAGTCCAAAGAGGAGAAGCAAAGGGCATTACTGCAAATGCAGTGGAGAGTTATGGGTAATAAACCACAAGAGGACCAAGAAGTGAATTCAAAGAAGGATTACTCCATTTCTTCAAGGCAGATGAGAAACACGGTTAGTAGAAAAAGAAGTCAGCATTCTCTTGTAAGACCAGAGAACGACGGAAAGGAGTCACCTTTACTGGAAGTAACACAAACACCAGTGTCAAAGTTGTTGAAGAAAGTAGAGAACATAAACACACGAAGTGTAATGAGTATTCCACAGAATCACAAAAAGGTATATAACTTCTGTACTAGGTTTGCCTTCTAG

Protein Analysis

797

Amino Acids

92.09

Weight (kDa)

5.76

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
AccI GTMKAC 2 cut(s) 1399, 1576
AccII CGCG 2 cut(s) 100, 1830
AccIII TCCGGA 1 cut(s) 1689
AciI CCGC 2 cut(s) 243, 873
AclI AACGTT 1 cut(s) 739
AclWI GGATC 3 cut(s) 45, 1443, 2064
AcoI YGGCCR 1 cut(s) 870
AcsI RAATTY 4 cut(s) 136, 1174, 1251, 2149
AcuI CTGAAG 3 cut(s) 1088, 1206, 2000
AdeI CACNNNGTG 1 cut(s) 2327
AfaI GTAC 2 cut(s) 1820, 2374
AfiI CCNNNNNNNGG 1 cut(s) 1164
AflII CTTAAG 2 cut(s) 368, 629
AjnI CCWGG 1 cut(s) 879
AjuI GAANNNNNNNTTGG 4 cut(s) 674, 706, 1740, 1772
Alw21I GWGCWC 2 cut(s) 76, 1472
Alw26I GTCTC 5 cut(s) 264, 972, 997, 1207, 1237
AlwI GGATC 3 cut(s) 45, 1443, 2064
Aor13HI TCCGGA 1 cut(s) 1689
AoxI GGCC 1 cut(s) 870
ApeKI GCWGC 4 cut(s) 466, 703, 1565, 2041
ApoI RAATTY 4 cut(s) 136, 1174, 1251, 2149
ArsI GACNNNNNNTTYG 4 cut(s) 445, 477, 1381, 1413
AseI ATTAAT 1 cut(s) 1680
Asp700I GAANNNNTTC 2 cut(s) 83, 347
AspLEI GCGC 1 cut(s) 1830
AspS9I GGNCC 2 cut(s) 964, 2137
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 5 cut(s) 385, 707, 1424, 2060, 2247
AvaII GGWCC 2 cut(s) 964, 2137
BanII GRGCYC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 76, 1472
BbvI GCAGC 4 cut(s) 478, 715, 1552, 2028
BccI CCATC 5 cut(s) 562, 566, 955, 1219, 1435
BciT130I CCWGG 1 cut(s) 881
BclI TGATCA 2 cut(s) 1012, 1669
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 5 cut(s) 264, 972, 997, 1207, 1237
BfaI CTAG 6 cut(s) 11, 650, 1475, 1613, 2376, 2389
BfmI CTRYAG 2 cut(s) 597, 2042
BfrI CTTAAG 2 cut(s) 368, 629
BglII AGATCT 1 cut(s) 1300
BisI GCNGC 5 cut(s) 467, 704, 873, 1566, 2042
BlpI GCTNAGC 1 cut(s) 363
BlsI GCNGC 5 cut(s) 468, 705, 874, 1567, 2043
BmcAI AGTACT 1 cut(s) 1820
Bme1390I CCNGG 2 cut(s) 21, 881
Bme18I GGWCC 2 cut(s) 964, 2137
BmgT120I GGNCC 2 cut(s) 964, 2137
BmiI GGNNCC 1 cut(s) 617
BmrFI CCNGG 2 cut(s) 21, 881
BmsI GCATC 4 cut(s) 481, 1015, 1045, 1815
BpiI GAAGAC 1 cut(s) 393
BpmI CTGGAG 3 cut(s) 90, 1448, 1736
Bpu10I CCTNAGC 1 cut(s) 753
Bpu1102I GCTNAGC 1 cut(s) 363
BpuEI CTTGAG 2 cut(s) 728, 854
BpuMI CCSGG 1 cut(s) 21
Bsa29I ATCGAT 1 cut(s) 192
BsaI GGTCTC 3 cut(s) 972, 1207, 1237
BsaWI WCCGGW 1 cut(s) 1689
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 1164
Bse1I ACTGG 4 cut(s) 154, 1632, 2268, 2282
BseAI TCCGGA 1 cut(s) 1689
BseBI CCWGG 1 cut(s) 881
BseCI ATCGAT 1 cut(s) 192
BseGI GGATG 4 cut(s) 496, 577, 733, 1686
BseLI CCNNNNNNNGG 1 cut(s) 1164
BseMII CTCAG 6 cut(s) 486, 767, 1013, 1323, 1883, 1991
BseNI ACTGG 4 cut(s) 154, 1632, 2268, 2282
BseRI GAGGAG 1 cut(s) 2090
BseXI GCAGC 4 cut(s) 478, 715, 1552, 2028
BsgI GTGCAG 1 cut(s) 722
Bsh1236I CGCG 2 cut(s) 100, 1830
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 872
BshVI ATCGAT 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 76, 1472
BsiSI CCGG 2 cut(s) 20, 1690
BslFI GGGAC 1 cut(s) 34
BslI CCNNNNNNNGG 1 cut(s) 1164
BsmAI GTCTC 5 cut(s) 264, 972, 997, 1207, 1237
BsmFI GGGAC 1 cut(s) 34
BsmI GAATGC 6 cut(s) 349, 524, 1151, 1802, 1863, 2218
BsnI GGCC 1 cut(s) 872
Bso31I GGTCTC 3 cut(s) 972, 1207, 1237
Bsp1286I GDGCHC 2 cut(s) 76, 1472
Bsp13I TCCGGA 1 cut(s) 1689
Bsp1720I GCTNAGC 1 cut(s) 363
BspACI CCGC 2 cut(s) 243, 873
BspANI GGCC 1 cut(s) 872
BspCNI CTCAG 6 cut(s) 487, 766, 1012, 1324, 1884, 1992
BspDI ATCGAT 1 cut(s) 192
BspEI TCCGGA 1 cut(s) 1689
BspFNI CGCG 2 cut(s) 100, 1830
BspLI GGNNCC 1 cut(s) 617
BspMAI CTGCAG 2 cut(s) 601, 2046
BspPI GGATC 3 cut(s) 45, 1443, 2064
BspQI GCTCTTC 2 cut(s) 1419, 1911
BspTI CTTAAG 2 cut(s) 368, 629
BspTNI GGTCTC 3 cut(s) 972, 1207, 1237
BsrI ACTGG 4 cut(s) 154, 1632, 2268, 2282
Bst2UI CCWGG 1 cut(s) 881
Bst4CI ACNGT 4 cut(s) 554, 1008, 1397, 2197
Bst6I CTCTTC 3 cut(s) 100, 1419, 1911
BstAFI CTTAAG 2 cut(s) 368, 629
BstC8I GCNNGC 3 cut(s) 996, 1472, 1941
BstF5I GGATG 4 cut(s) 496, 577, 733, 1686
BstFNI CGCG 2 cut(s) 100, 1830
BstHHI GCGC 1 cut(s) 1830
BstMAI GTCTC 5 cut(s) 264, 972, 997, 1207, 1237
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 650, 881, 995
BstNI CCWGG 1 cut(s) 881
BstSCI CCNGG 2 cut(s) 19, 879
BstSFI CTRYAG 2 cut(s) 597, 2042
BstUI CGCG 2 cut(s) 100, 1830
BstV1I GCAGC 4 cut(s) 478, 715, 1552, 2028
BstV2I GAAGAC 1 cut(s) 393
BstX2I RGATCY 3 cut(s) 1300, 1435, 2056
BstYI RGATCY 3 cut(s) 1300, 1435, 2056
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 872
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 4 cut(s) 496, 577, 733, 1686
BtsI GCAGTG 1 cut(s) 2111
BtsIMutI CAGTG 4 cut(s) 147, 312, 2111, 2289
Cac8I GCNNGC 3 cut(s) 996, 1472, 1941
CfoI GCGC 1 cut(s) 1830
Cfr13I GGNCC 2 cut(s) 964, 2137
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 1 cut(s) 89
Csp6I GTAC 2 cut(s) 1819, 2373
CspCI CAANNNNNGTGG 2 cut(s) 2087, 2122
CviQI GTAC 2 cut(s) 1819, 2373
DraI TTTAAA 1 cut(s) 558
DraIII CACNNNGTG 1 cut(s) 2327
EaeI YGGCCR 1 cut(s) 870
Eam1104I CTCTTC 3 cut(s) 100, 1419, 1911
EarI CTCTTC 3 cut(s) 100, 1419, 1911
Ecl136II GAGCTC 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 76
Eco31I GGTCTC 3 cut(s) 972, 1207, 1237
Eco32I GATATC 1 cut(s) 1654
Eco47I GGWCC 2 cut(s) 964, 2137
Eco53kI GAGCTC 1 cut(s) 74
Eco57I CTGAAG 3 cut(s) 1088, 1206, 2000
EcoICRI GAGCTC 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 2149
EcoRII CCWGG 1 cut(s) 879
EcoRV GATATC 1 cut(s) 1654
EcoT22I ATGCAT 1 cut(s) 1030
EcoT38I GRGCYC 1 cut(s) 76
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FaqI GGGAC 1 cut(s) 34
FbaI TGATCA 2 cut(s) 1012, 1669
FblI GTMKAC 2 cut(s) 1399, 1576
Fnu4HI GCNGC 5 cut(s) 467, 704, 873, 1566, 2042
FokI GGATG 4 cut(s) 503, 584, 740, 1673
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 5 cut(s) 467, 704, 873, 1566, 2042
FspBI CTAG 6 cut(s) 11, 650, 1475, 1613, 2376, 2389
GlaI GCGC 1 cut(s) 1829
GluI GCNGC 5 cut(s) 467, 704, 873, 1566, 2042
GsuI CTGGAG 3 cut(s) 90, 1448, 1736
HaeIII GGCC 1 cut(s) 872
HapII CCGG 2 cut(s) 20, 1690
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 1830
Hin6I GCGC 1 cut(s) 1828
HinP1I GCGC 1 cut(s) 1828
HincII GTYRAC 3 cut(s) 1456, 1560, 1726
HindII GTYRAC 3 cut(s) 1456, 1560, 1726
HindIII AAGCTT 3 cut(s) 127, 365, 992
HpaI GTTAAC 1 cut(s) 1726
HpaII CCGG 2 cut(s) 20, 1690
HphI GGTGA 5 cut(s) 385, 707, 1424, 2060, 2247
Hpy166II GTNNAC 6 cut(s) 1400, 1456, 1560, 1577, 1622, 1726
Hpy8I GTNNAC 6 cut(s) 1400, 1456, 1560, 1577, 1622, 1726
Hpy99I CGWCG 1 cut(s) 2246
HpyAV CCTTC 5 cut(s) 376, 845, 1403, 1879, 2152
HpyCH4III ACNGT 4 cut(s) 554, 1008, 1397, 2197
HpyCH4IV ACGT 1 cut(s) 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 650, 881, 995
HpySE526I ACGT 1 cut(s) 739
HspAI GCGC 1 cut(s) 1828
Kpn2I TCCGGA 1 cut(s) 1689
Ksp22I TGATCA 2 cut(s) 1012, 1669
KspAI GTTAAC 1 cut(s) 1726
LguI GCTCTTC 2 cut(s) 1419, 1911
LmnI GCTCC 6 cut(s) 71, 79, 310, 1467, 1486, 1980
Lsp1109I GCAGC 4 cut(s) 478, 715, 1552, 2028
LweI GCATC 4 cut(s) 481, 1015, 1045, 1815
MaeI CTAG 6 cut(s) 11, 650, 1475, 1613, 2376, 2389
MaeII ACGT 1 cut(s) 739
MaeIII GTNAC 2 cut(s) 2253, 2269
MfeI CAATTG 1 cut(s) 1064
MflI RGATCY 3 cut(s) 1300, 1435, 2056
MhlI GDGCHC 2 cut(s) 76, 1472
MlyI GAGTC 7 cut(s) 422, 518, 602, 1127, 1190, 1903, 2261
MmeI TCCRAC 3 cut(s) 1263, 1738, 1957
Mph1103I ATGCAT 1 cut(s) 1030
MroI TCCGGA 1 cut(s) 1689
MroXI GAANNNNTTC 2 cut(s) 83, 347
MslI CAYNNNNRTG 2 cut(s) 318, 2025
MspCI CTTAAG 2 cut(s) 368, 629
MspI CCGG 2 cut(s) 20, 1690
MspR9I CCNGG 2 cut(s) 21, 881
MunI CAATTG 1 cut(s) 1064
Mva1269I GAATGC 6 cut(s) 349, 524, 1151, 1802, 1863, 2218
MvaI CCWGG 1 cut(s) 881
MvnI CGCG 2 cut(s) 100, 1830
MwoI GCNNNNNNNGC 3 cut(s) 650, 881, 995
NciI CCSGG 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 617
NmeAIII GCCGAG 1 cut(s) 2020
NmuCI GTSAC 1 cut(s) 2253
NsiI ATGCAT 1 cut(s) 1030
PciSI GCTCTTC 2 cut(s) 1419, 1911
PctI GAATGC 6 cut(s) 349, 524, 1151, 1802, 1863, 2218
PdmI GAANNNNTTC 2 cut(s) 83, 347
PfeI GAWTC 5 cut(s) 110, 1195, 1522, 1808, 2347
PkrI GCNGC 5 cut(s) 468, 705, 874, 1567, 2043
Ple19I CGATCG 1 cut(s) 117
PleI GAGTC 7 cut(s) 421, 517, 601, 1126, 1189, 1902, 2260
PpsI GAGTC 7 cut(s) 421, 517, 601, 1126, 1189, 1902, 2260
PshBI ATTAAT 1 cut(s) 1680
PsiI TTATAA 1 cut(s) 611
Psp124BI GAGCTC 1 cut(s) 76
Psp1406I AACGTT 1 cut(s) 739
Psp6I CCWGG 1 cut(s) 879
PspGI CCWGG 1 cut(s) 879
PspN4I GGNNCC 1 cut(s) 617
PspPI GGNCC 2 cut(s) 964, 2137
PstI CTGCAG 2 cut(s) 601, 2046
PsuI RGATCY 3 cut(s) 1300, 1435, 2056
PvuI CGATCG 1 cut(s) 117
RsaI GTAC 2 cut(s) 1820, 2374
RsaNI GTAC 2 cut(s) 1819, 2373
RseI CAYNNNNRTG 2 cut(s) 318, 2025
SacI GAGCTC 1 cut(s) 76
SapI GCTCTTC 2 cut(s) 1419, 1911
SatI GCNGC 5 cut(s) 467, 704, 873, 1566, 2042
Sau96I GGNCC 2 cut(s) 964, 2137
ScaI AGTACT 1 cut(s) 1820
SchI GAGTC 7 cut(s) 422, 518, 602, 1127, 1190, 1903, 2261
ScrFI CCNGG 2 cut(s) 21, 881
SduI GDGCHC 2 cut(s) 76, 1472
SfaNI GCATC 4 cut(s) 481, 1015, 1045, 1815
SfcI CTRYAG 2 cut(s) 597, 2042
SinI GGWCC 2 cut(s) 964, 2137
SmiMI CAYNNNNRTG 2 cut(s) 318, 2025
SmlI CTYRAG 4 cut(s) 368, 629, 707, 833
SmoI CTYRAG 4 cut(s) 368, 629, 707, 833
SsiI CCGC 2 cut(s) 243, 873
SspMI CTAG 6 cut(s) 11, 650, 1475, 1613, 2376, 2389
SstI GAGCTC 1 cut(s) 76
StyD4I CCNGG 2 cut(s) 19, 879
TaaI ACNGT 4 cut(s) 554, 1008, 1397, 2197
TaiI ACGT 1 cut(s) 742
TaqI TCGA 6 cut(s) 113, 192, 274, 1098, 1707, 1811
TatI WGTACW 2 cut(s) 1818, 2372
TauI GCSGC 1 cut(s) 875
TfiI GAWTC 5 cut(s) 110, 1195, 1522, 1808, 2347
TscAI CASTG 4 cut(s) 154, 312, 2111, 2289
TseFI GTSAC 1 cut(s) 2253
TseI GCWGC 4 cut(s) 466, 703, 1565, 2041
Tsp45I GTSAC 1 cut(s) 2253
TspDTI ATGAA 8 cut(s) 369, 744, 851, 1244, 1398, 1437, 2004, 2037
TspGWI ACGGA 1 cut(s) 2259
TspRI CASTG 4 cut(s) 154, 312, 2111, 2289
Vha464I CTTAAG 2 cut(s) 368, 629
VpaK11BI GGWCC 2 cut(s) 964, 2137
VspI ATTAAT 1 cut(s) 1680
XapI RAATTY 4 cut(s) 136, 1174, 1251, 2149
XmiI GTMKAC 2 cut(s) 1399, 1576
XmnI GAANNNNTTC 2 cut(s) 83, 347
XspI CTAG 6 cut(s) 11, 650, 1475, 1613, 2376, 2389
ZrmI AGTACT 1 cut(s) 1820
Zsp2I ATGCAT 1 cut(s) 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.