Synaptonemal complex protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 611 |
| AccI | GTMKAC | 2 cut(s) | 1399, 1576 |
| AccII | CGCG | 2 cut(s) | 100, 1830 |
| AccIII | TCCGGA | 1 cut(s) | 1689 |
| AciI | CCGC | 2 cut(s) | 243, 873 |
| AclI | AACGTT | 1 cut(s) | 739 |
| AclWI | GGATC | 3 cut(s) | 45, 1443, 2064 |
| AcoI | YGGCCR | 1 cut(s) | 870 |
| AcsI | RAATTY | 4 cut(s) | 136, 1174, 1251, 2149 |
| AcuI | CTGAAG | 3 cut(s) | 1088, 1206, 2000 |
| AdeI | CACNNNGTG | 1 cut(s) | 2327 |
| AfaI | GTAC | 2 cut(s) | 1820, 2374 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1164 |
| AflII | CTTAAG | 2 cut(s) | 368, 629 |
| AjnI | CCWGG | 1 cut(s) | 879 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 674, 706, 1740, 1772 |
| Alw21I | GWGCWC | 2 cut(s) | 76, 1472 |
| Alw26I | GTCTC | 5 cut(s) | 264, 972, 997, 1207, 1237 |
| AlwI | GGATC | 3 cut(s) | 45, 1443, 2064 |
| Aor13HI | TCCGGA | 1 cut(s) | 1689 |
| AoxI | GGCC | 1 cut(s) | 870 |
| ApeKI | GCWGC | 4 cut(s) | 466, 703, 1565, 2041 |
| ApoI | RAATTY | 4 cut(s) | 136, 1174, 1251, 2149 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 445, 477, 1381, 1413 |
| AseI | ATTAAT | 1 cut(s) | 1680 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 83, 347 |
| AspLEI | GCGC | 1 cut(s) | 1830 |
| AspS9I | GGNCC | 2 cut(s) | 964, 2137 |
| AsuC2I | CCSGG | 1 cut(s) | 21 |
| AsuHPI | GGTGA | 5 cut(s) | 385, 707, 1424, 2060, 2247 |
| AvaII | GGWCC | 2 cut(s) | 964, 2137 |
| BanII | GRGCYC | 1 cut(s) | 76 |
| BbsI | GAAGAC | 1 cut(s) | 393 |
| Bbv12I | GWGCWC | 2 cut(s) | 76, 1472 |
| BbvI | GCAGC | 4 cut(s) | 478, 715, 1552, 2028 |
| BccI | CCATC | 5 cut(s) | 562, 566, 955, 1219, 1435 |
| BciT130I | CCWGG | 1 cut(s) | 881 |
| BclI | TGATCA | 2 cut(s) | 1012, 1669 |
| BcnI | CCSGG | 1 cut(s) | 21 |
| BcoDI | GTCTC | 5 cut(s) | 264, 972, 997, 1207, 1237 |
| BfaI | CTAG | 6 cut(s) | 11, 650, 1475, 1613, 2376, 2389 |
| BfmI | CTRYAG | 2 cut(s) | 597, 2042 |
| BfrI | CTTAAG | 2 cut(s) | 368, 629 |
| BglII | AGATCT | 1 cut(s) | 1300 |
| BisI | GCNGC | 5 cut(s) | 467, 704, 873, 1566, 2042 |
| BlpI | GCTNAGC | 1 cut(s) | 363 |
| BlsI | GCNGC | 5 cut(s) | 468, 705, 874, 1567, 2043 |
| BmcAI | AGTACT | 1 cut(s) | 1820 |
| Bme1390I | CCNGG | 2 cut(s) | 21, 881 |
| Bme18I | GGWCC | 2 cut(s) | 964, 2137 |
| BmgT120I | GGNCC | 2 cut(s) | 964, 2137 |
| BmiI | GGNNCC | 1 cut(s) | 617 |
| BmrFI | CCNGG | 2 cut(s) | 21, 881 |
| BmsI | GCATC | 4 cut(s) | 481, 1015, 1045, 1815 |
| BpiI | GAAGAC | 1 cut(s) | 393 |
| BpmI | CTGGAG | 3 cut(s) | 90, 1448, 1736 |
| Bpu10I | CCTNAGC | 1 cut(s) | 753 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 363 |
| BpuEI | CTTGAG | 2 cut(s) | 728, 854 |
| BpuMI | CCSGG | 1 cut(s) | 21 |
| Bsa29I | ATCGAT | 1 cut(s) | 192 |
| BsaI | GGTCTC | 3 cut(s) | 972, 1207, 1237 |
| BsaWI | WCCGGW | 1 cut(s) | 1689 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 404, 434 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1164 |
| Bse1I | ACTGG | 4 cut(s) | 154, 1632, 2268, 2282 |
| BseAI | TCCGGA | 1 cut(s) | 1689 |
| BseBI | CCWGG | 1 cut(s) | 881 |
| BseCI | ATCGAT | 1 cut(s) | 192 |
| BseGI | GGATG | 4 cut(s) | 496, 577, 733, 1686 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1164 |
| BseMII | CTCAG | 6 cut(s) | 486, 767, 1013, 1323, 1883, 1991 |
| BseNI | ACTGG | 4 cut(s) | 154, 1632, 2268, 2282 |
| BseRI | GAGGAG | 1 cut(s) | 2090 |
| BseXI | GCAGC | 4 cut(s) | 478, 715, 1552, 2028 |
| BsgI | GTGCAG | 1 cut(s) | 722 |
| Bsh1236I | CGCG | 2 cut(s) | 100, 1830 |
| Bsh1285I | CGRYCG | 1 cut(s) | 117 |
| BshFI | GGCC | 1 cut(s) | 872 |
| BshVI | ATCGAT | 1 cut(s) | 192 |
| BsiEI | CGRYCG | 1 cut(s) | 117 |
| BsiHKAI | GWGCWC | 2 cut(s) | 76, 1472 |
| BsiSI | CCGG | 2 cut(s) | 20, 1690 |
| BslFI | GGGAC | 1 cut(s) | 34 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1164 |
| BsmAI | GTCTC | 5 cut(s) | 264, 972, 997, 1207, 1237 |
| BsmFI | GGGAC | 1 cut(s) | 34 |
| BsmI | GAATGC | 6 cut(s) | 349, 524, 1151, 1802, 1863, 2218 |
| BsnI | GGCC | 1 cut(s) | 872 |
| Bso31I | GGTCTC | 3 cut(s) | 972, 1207, 1237 |
| Bsp1286I | GDGCHC | 2 cut(s) | 76, 1472 |
| Bsp13I | TCCGGA | 1 cut(s) | 1689 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 363 |
| BspACI | CCGC | 2 cut(s) | 243, 873 |
| BspANI | GGCC | 1 cut(s) | 872 |
| BspCNI | CTCAG | 6 cut(s) | 487, 766, 1012, 1324, 1884, 1992 |
| BspDI | ATCGAT | 1 cut(s) | 192 |
| BspEI | TCCGGA | 1 cut(s) | 1689 |
| BspFNI | CGCG | 2 cut(s) | 100, 1830 |
| BspLI | GGNNCC | 1 cut(s) | 617 |
| BspMAI | CTGCAG | 2 cut(s) | 601, 2046 |
| BspPI | GGATC | 3 cut(s) | 45, 1443, 2064 |
| BspQI | GCTCTTC | 2 cut(s) | 1419, 1911 |
| BspTI | CTTAAG | 2 cut(s) | 368, 629 |
| BspTNI | GGTCTC | 3 cut(s) | 972, 1207, 1237 |
| BsrI | ACTGG | 4 cut(s) | 154, 1632, 2268, 2282 |
| Bst2UI | CCWGG | 1 cut(s) | 881 |
| Bst4CI | ACNGT | 4 cut(s) | 554, 1008, 1397, 2197 |
| Bst6I | CTCTTC | 3 cut(s) | 100, 1419, 1911 |
| BstAFI | CTTAAG | 2 cut(s) | 368, 629 |
| BstC8I | GCNNGC | 3 cut(s) | 996, 1472, 1941 |
| BstF5I | GGATG | 4 cut(s) | 496, 577, 733, 1686 |
| BstFNI | CGCG | 2 cut(s) | 100, 1830 |
| BstHHI | GCGC | 1 cut(s) | 1830 |
| BstMAI | GTCTC | 5 cut(s) | 264, 972, 997, 1207, 1237 |
| BstMCI | CGRYCG | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 650, 881, 995 |
| BstNI | CCWGG | 1 cut(s) | 881 |
| BstSCI | CCNGG | 2 cut(s) | 19, 879 |
| BstSFI | CTRYAG | 2 cut(s) | 597, 2042 |
| BstUI | CGCG | 2 cut(s) | 100, 1830 |
| BstV1I | GCAGC | 4 cut(s) | 478, 715, 1552, 2028 |
| BstV2I | GAAGAC | 1 cut(s) | 393 |
| BstX2I | RGATCY | 3 cut(s) | 1300, 1435, 2056 |
| BstYI | RGATCY | 3 cut(s) | 1300, 1435, 2056 |
| Bsu15I | ATCGAT | 1 cut(s) | 192 |
| BsuRI | GGCC | 1 cut(s) | 872 |
| BsuTUI | ATCGAT | 1 cut(s) | 192 |
| BtsCI | GGATG | 4 cut(s) | 496, 577, 733, 1686 |
| BtsI | GCAGTG | 1 cut(s) | 2111 |
| BtsIMutI | CAGTG | 4 cut(s) | 147, 312, 2111, 2289 |
| Cac8I | GCNNGC | 3 cut(s) | 996, 1472, 1941 |
| CfoI | GCGC | 1 cut(s) | 1830 |
| Cfr13I | GGNCC | 2 cut(s) | 964, 2137 |
| ClaI | ATCGAT | 1 cut(s) | 192 |
| CseI | GACGC | 1 cut(s) | 89 |
| Csp6I | GTAC | 2 cut(s) | 1819, 2373 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2087, 2122 |
| CviQI | GTAC | 2 cut(s) | 1819, 2373 |
| DraI | TTTAAA | 1 cut(s) | 558 |
| DraIII | CACNNNGTG | 1 cut(s) | 2327 |
| EaeI | YGGCCR | 1 cut(s) | 870 |
| Eam1104I | CTCTTC | 3 cut(s) | 100, 1419, 1911 |
| EarI | CTCTTC | 3 cut(s) | 100, 1419, 1911 |
| Ecl136II | GAGCTC | 1 cut(s) | 74 |
| Eco24I | GRGCYC | 1 cut(s) | 76 |
| Eco31I | GGTCTC | 3 cut(s) | 972, 1207, 1237 |
| Eco32I | GATATC | 1 cut(s) | 1654 |
| Eco47I | GGWCC | 2 cut(s) | 964, 2137 |
| Eco53kI | GAGCTC | 1 cut(s) | 74 |
| Eco57I | CTGAAG | 3 cut(s) | 1088, 1206, 2000 |
| EcoICRI | GAGCTC | 1 cut(s) | 74 |
| EcoRI | GAATTC | 1 cut(s) | 2149 |
| EcoRII | CCWGG | 1 cut(s) | 879 |
| EcoRV | GATATC | 1 cut(s) | 1654 |
| EcoT22I | ATGCAT | 1 cut(s) | 1030 |
| EcoT38I | GRGCYC | 1 cut(s) | 76 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 497, 529 |
| FaqI | GGGAC | 1 cut(s) | 34 |
| FbaI | TGATCA | 2 cut(s) | 1012, 1669 |
| FblI | GTMKAC | 2 cut(s) | 1399, 1576 |
| Fnu4HI | GCNGC | 5 cut(s) | 467, 704, 873, 1566, 2042 |
| FokI | GGATG | 4 cut(s) | 503, 584, 740, 1673 |
| FriOI | GRGCYC | 1 cut(s) | 76 |
| Fsp4HI | GCNGC | 5 cut(s) | 467, 704, 873, 1566, 2042 |
| FspBI | CTAG | 6 cut(s) | 11, 650, 1475, 1613, 2376, 2389 |
| GlaI | GCGC | 1 cut(s) | 1829 |
| GluI | GCNGC | 5 cut(s) | 467, 704, 873, 1566, 2042 |
| GsuI | CTGGAG | 3 cut(s) | 90, 1448, 1736 |
| HaeIII | GGCC | 1 cut(s) | 872 |
| HapII | CCGG | 2 cut(s) | 20, 1690 |
| HgaI | GACGC | 1 cut(s) | 89 |
| HhaI | GCGC | 1 cut(s) | 1830 |
| Hin6I | GCGC | 1 cut(s) | 1828 |
| HinP1I | GCGC | 1 cut(s) | 1828 |
| HincII | GTYRAC | 3 cut(s) | 1456, 1560, 1726 |
| HindII | GTYRAC | 3 cut(s) | 1456, 1560, 1726 |
| HindIII | AAGCTT | 3 cut(s) | 127, 365, 992 |
| HpaI | GTTAAC | 1 cut(s) | 1726 |
| HpaII | CCGG | 2 cut(s) | 20, 1690 |
| HphI | GGTGA | 5 cut(s) | 385, 707, 1424, 2060, 2247 |
| Hpy166II | GTNNAC | 6 cut(s) | 1400, 1456, 1560, 1577, 1622, 1726 |
| Hpy8I | GTNNAC | 6 cut(s) | 1400, 1456, 1560, 1577, 1622, 1726 |
| Hpy99I | CGWCG | 1 cut(s) | 2246 |
| HpyAV | CCTTC | 5 cut(s) | 376, 845, 1403, 1879, 2152 |
| HpyCH4III | ACNGT | 4 cut(s) | 554, 1008, 1397, 2197 |
| HpyCH4IV | ACGT | 1 cut(s) | 739 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 650, 881, 995 |
| HpySE526I | ACGT | 1 cut(s) | 739 |
| HspAI | GCGC | 1 cut(s) | 1828 |
| Kpn2I | TCCGGA | 1 cut(s) | 1689 |
| Ksp22I | TGATCA | 2 cut(s) | 1012, 1669 |
| KspAI | GTTAAC | 1 cut(s) | 1726 |
| LguI | GCTCTTC | 2 cut(s) | 1419, 1911 |
| LmnI | GCTCC | 6 cut(s) | 71, 79, 310, 1467, 1486, 1980 |
| Lsp1109I | GCAGC | 4 cut(s) | 478, 715, 1552, 2028 |
| LweI | GCATC | 4 cut(s) | 481, 1015, 1045, 1815 |
| MaeI | CTAG | 6 cut(s) | 11, 650, 1475, 1613, 2376, 2389 |
| MaeII | ACGT | 1 cut(s) | 739 |
| MaeIII | GTNAC | 2 cut(s) | 2253, 2269 |
| MfeI | CAATTG | 1 cut(s) | 1064 |
| MflI | RGATCY | 3 cut(s) | 1300, 1435, 2056 |
| MhlI | GDGCHC | 2 cut(s) | 76, 1472 |
| MlyI | GAGTC | 7 cut(s) | 422, 518, 602, 1127, 1190, 1903, 2261 |
| MmeI | TCCRAC | 3 cut(s) | 1263, 1738, 1957 |
| Mph1103I | ATGCAT | 1 cut(s) | 1030 |
| MroI | TCCGGA | 1 cut(s) | 1689 |
| MroXI | GAANNNNTTC | 2 cut(s) | 83, 347 |
| MslI | CAYNNNNRTG | 2 cut(s) | 318, 2025 |
| MspCI | CTTAAG | 2 cut(s) | 368, 629 |
| MspI | CCGG | 2 cut(s) | 20, 1690 |
| MspR9I | CCNGG | 2 cut(s) | 21, 881 |
| MunI | CAATTG | 1 cut(s) | 1064 |
| Mva1269I | GAATGC | 6 cut(s) | 349, 524, 1151, 1802, 1863, 2218 |
| MvaI | CCWGG | 1 cut(s) | 881 |
| MvnI | CGCG | 2 cut(s) | 100, 1830 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 650, 881, 995 |
| NciI | CCSGG | 1 cut(s) | 21 |
| NlaIV | GGNNCC | 1 cut(s) | 617 |
| NmeAIII | GCCGAG | 1 cut(s) | 2020 |
| NmuCI | GTSAC | 1 cut(s) | 2253 |
| NsiI | ATGCAT | 1 cut(s) | 1030 |
| PciSI | GCTCTTC | 2 cut(s) | 1419, 1911 |
| PctI | GAATGC | 6 cut(s) | 349, 524, 1151, 1802, 1863, 2218 |
| PdmI | GAANNNNTTC | 2 cut(s) | 83, 347 |
| PfeI | GAWTC | 5 cut(s) | 110, 1195, 1522, 1808, 2347 |
| PkrI | GCNGC | 5 cut(s) | 468, 705, 874, 1567, 2043 |
| Ple19I | CGATCG | 1 cut(s) | 117 |
| PleI | GAGTC | 7 cut(s) | 421, 517, 601, 1126, 1189, 1902, 2260 |
| PpsI | GAGTC | 7 cut(s) | 421, 517, 601, 1126, 1189, 1902, 2260 |
| PshBI | ATTAAT | 1 cut(s) | 1680 |
| PsiI | TTATAA | 1 cut(s) | 611 |
| Psp124BI | GAGCTC | 1 cut(s) | 76 |
| Psp1406I | AACGTT | 1 cut(s) | 739 |
| Psp6I | CCWGG | 1 cut(s) | 879 |
| PspGI | CCWGG | 1 cut(s) | 879 |
| PspN4I | GGNNCC | 1 cut(s) | 617 |
| PspPI | GGNCC | 2 cut(s) | 964, 2137 |
| PstI | CTGCAG | 2 cut(s) | 601, 2046 |
| PsuI | RGATCY | 3 cut(s) | 1300, 1435, 2056 |
| PvuI | CGATCG | 1 cut(s) | 117 |
| RsaI | GTAC | 2 cut(s) | 1820, 2374 |
| RsaNI | GTAC | 2 cut(s) | 1819, 2373 |
| RseI | CAYNNNNRTG | 2 cut(s) | 318, 2025 |
| SacI | GAGCTC | 1 cut(s) | 76 |
| SapI | GCTCTTC | 2 cut(s) | 1419, 1911 |
| SatI | GCNGC | 5 cut(s) | 467, 704, 873, 1566, 2042 |
| Sau96I | GGNCC | 2 cut(s) | 964, 2137 |
| ScaI | AGTACT | 1 cut(s) | 1820 |
| SchI | GAGTC | 7 cut(s) | 422, 518, 602, 1127, 1190, 1903, 2261 |
| ScrFI | CCNGG | 2 cut(s) | 21, 881 |
| SduI | GDGCHC | 2 cut(s) | 76, 1472 |
| SfaNI | GCATC | 4 cut(s) | 481, 1015, 1045, 1815 |
| SfcI | CTRYAG | 2 cut(s) | 597, 2042 |
| SinI | GGWCC | 2 cut(s) | 964, 2137 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 318, 2025 |
| SmlI | CTYRAG | 4 cut(s) | 368, 629, 707, 833 |
| SmoI | CTYRAG | 4 cut(s) | 368, 629, 707, 833 |
| SsiI | CCGC | 2 cut(s) | 243, 873 |
| SspMI | CTAG | 6 cut(s) | 11, 650, 1475, 1613, 2376, 2389 |
| SstI | GAGCTC | 1 cut(s) | 76 |
| StyD4I | CCNGG | 2 cut(s) | 19, 879 |
| TaaI | ACNGT | 4 cut(s) | 554, 1008, 1397, 2197 |
| TaiI | ACGT | 1 cut(s) | 742 |
| TaqI | TCGA | 6 cut(s) | 113, 192, 274, 1098, 1707, 1811 |
| TatI | WGTACW | 2 cut(s) | 1818, 2372 |
| TauI | GCSGC | 1 cut(s) | 875 |
| TfiI | GAWTC | 5 cut(s) | 110, 1195, 1522, 1808, 2347 |
| TscAI | CASTG | 4 cut(s) | 154, 312, 2111, 2289 |
| TseFI | GTSAC | 1 cut(s) | 2253 |
| TseI | GCWGC | 4 cut(s) | 466, 703, 1565, 2041 |
| Tsp45I | GTSAC | 1 cut(s) | 2253 |
| TspDTI | ATGAA | 8 cut(s) | 369, 744, 851, 1244, 1398, 1437, 2004, 2037 |
| TspGWI | ACGGA | 1 cut(s) | 2259 |
| TspRI | CASTG | 4 cut(s) | 154, 312, 2111, 2289 |
| Vha464I | CTTAAG | 2 cut(s) | 368, 629 |
| VpaK11BI | GGWCC | 2 cut(s) | 964, 2137 |
| VspI | ATTAAT | 1 cut(s) | 1680 |
| XapI | RAATTY | 4 cut(s) | 136, 1174, 1251, 2149 |
| XmiI | GTMKAC | 2 cut(s) | 1399, 1576 |
| XmnI | GAANNNNTTC | 2 cut(s) | 83, 347 |
| XspI | CTAG | 6 cut(s) | 11, 650, 1475, 1613, 2376, 2389 |
| ZrmI | AGTACT | 1 cut(s) | 1820 |
| Zsp2I | ATGCAT | 1 cut(s) | 1030 |