Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

83036840 .. 83038881

Gene Structure 2042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53624

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGATAAAATGGCCAAGTTCTATAGATCTTCAAGAAGATTCACCTCTAGTAGGAGCATCACAAACACCAGTGTCAACACTATTGAAGAAAGCTTCGGAGAATATGAATTCTCCAAATGTAATGAATATTTCAAAGCACCAAAAAAAGGTCATTTTTGATGAATATGAAGTTGAAACTGGTAATGGTAGAACTATTAAACTGAAAACAAGAAGCACAGACATGTTTGAGGATCCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

8.94

Weight (kDa)

6.56

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	224, 237
AcoI	YGGCCR	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	50, 145
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	4 cut(s)	32, 85, 132, 173
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	2 cut(s)	224, 237
AoxI	GGCC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	33
BalI	TGGCCA	1 cut(s)	13
BamHI	GGATCC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	1 cut(s)	21
BglII	AGATCT	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 145
Bse1I	ACTGG	2 cut(s)	68, 181
BseLI	CCNNNNNNNGG	2 cut(s)	50, 145
BseNI	ACTGG	2 cut(s)	68, 181
BshFI	GGCC	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	50, 145
BsnI	GGCC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	25, 229
BspANI	GGCC	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	224, 237
BsrI	ACTGG	2 cut(s)	68, 181
BssMI	GATC	2 cut(s)	25, 229
BstENI	CCTNNNNNAGG	1 cut(s)	48
BstKTI	GATC	2 cut(s)	28, 232
BstMBI	GATC	2 cut(s)	25, 229
BstNSI	RCATGY	1 cut(s)	223
BstSFI	CTRYAG	1 cut(s)	21
BstX2I	RGATCY	2 cut(s)	25, 229
BstYI	RGATCY	2 cut(s)	25, 229
BsuRI	GGCC	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	75
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	2 cut(s)	13, 92
CviKI_1	RGCY	2 cut(s)	13, 92
DpnI	GATC	2 cut(s)	27, 231
DpnII	GATC	2 cut(s)	25, 229
EaeI	YGGCCR	1 cut(s)	11
EcoNI	CCTNNNNNAGG	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	106
FaeI	CATG	1 cut(s)	223
FaiI	YATR	4 cut(s)	23, 104, 165, 221
FatI	CATG	1 cut(s)	219
FspBI	CTAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	33
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	75
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	25, 229
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	2 cut(s)	81, 162
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	47
MalI	GATC	2 cut(s)	27, 231
MboI	GATC	2 cut(s)	25, 229
MboII	GAAGA	3 cut(s)	20, 47, 97
MflI	RGATCY	2 cut(s)	25, 229
MlsI	TGGCCA	1 cut(s)	13
MluCI	AATT	1 cut(s)	106
MluNI	TGGCCA	1 cut(s)	13
MnlI	CCTC	2 cut(s)	54, 220
Mox20I	TGGCCA	1 cut(s)	13
MscI	TGGCCA	1 cut(s)	13
MseI	TTAA	1 cut(s)	195
MslI	CAYNNNNRTG	1 cut(s)	218
Msp20I	TGGCCA	1 cut(s)	13
NdeII	GATC	2 cut(s)	25, 229
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	231
NspI	RCATGY	1 cut(s)	223
PciI	ACATGT	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	38
PscI	ACATGT	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	231
PsuI	RGATCY	2 cut(s)	25, 229
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	195
Sau3AI	GATC	2 cut(s)	25, 229
SetI	ASST	3 cut(s)	46, 94, 150
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	21
SgeI	CNNG	7 cut(s)	27, 44, 59, 80, 189, 219, 232
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	1 cut(s)	106
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	1 cut(s)	47
TasI	AATT	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	75
TspDTI	ATGAA	4 cut(s)	119, 137, 174, 180
TspRI	CASTG	1 cut(s)	75
XagI	CCTNNNNNAGG	1 cut(s)	48
XapI	RAATTY	1 cut(s)	106
XceI	RCATGY	1 cut(s)	223
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.