Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

55649977 .. 55652034

Gene Structure 2058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG411900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAGATATATTTCCACAACCAAACCCTGAGAATATGCCATGTGAGTCTTCGGGTTCAGGTGAACCACAACCTTCAACCTACATCTCAAAATGATAATAGCCAACCTAATGAGGTTGGCATTGAACCTACTGATCCCAACAAAGAAGATGTGCTGAAAATCTCAGCAGTAGAAATGGAGAATAAAGATAAGACAGAGAAACTACAAGTAGAGGTATGGAAGAAAGTGGAACAAATAGATAGTTTACTGAAGGAAGGTGAAACACATGAGCAACATGTAGATTTGATGGATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

98

Amino Acids

11.43

Weight (kDa)

5.28

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	77, 125
AlwI	GGATC	1 cut(s)	128
AsuHPI	GGTGA	2 cut(s)	73, 269
BbsI	GAAGAC	1 cut(s)	41
BccI	CCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	20, 177
Bsp143I	GATC	1 cut(s)	133
BspCNI	CTCAG	2 cut(s)	21, 176
BspPI	GGATC	1 cut(s)	128
BssMI	GATC	1 cut(s)	133
BstDEI	CTNAG	2 cut(s)	29, 163
BstKTI	GATC	1 cut(s)	136
BstMBI	GATC	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	41
CviAII	CATG	3 cut(s)	41, 266, 275
CviJI	RGCY	1 cut(s)	102
CviKI_1	RGCY	1 cut(s)	102
DdeI	CTNAG	2 cut(s)	29, 163
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	269
FaeI	CATG	3 cut(s)	44, 269, 278
FaiI	YATR	6 cut(s)	10, 37, 42, 217, 267, 276
FatI	CATG	3 cut(s)	40, 265, 274
Hin1II	CATG	3 cut(s)	44, 269, 278
HinfI	GANTC	1 cut(s)	46
HphI	GGTGA	2 cut(s)	73, 269
Hpy166II	GTNNAC	2 cut(s)	64, 245
Hpy8I	GTNNAC	2 cut(s)	64, 245
HpyAV	CCTTC	3 cut(s)	83, 244, 248
HpyF3I	CTNAG	2 cut(s)	29, 163
Hsp92II	CATG	3 cut(s)	44, 269, 278
Kzo9I	GATC	1 cut(s)	133
LpnPI	CCDG	2 cut(s)	41, 44
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	4 cut(s)	16, 41, 158, 232
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	2 cut(s)	106, 205
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	44, 269, 278
NspI	RCATGY	1 cut(s)	278
PciI	ACATGT	1 cut(s)	274
PleI	GAGTC	1 cut(s)	54
PpsI	GAGTC	1 cut(s)	54
PscI	ACATGT	1 cut(s)	274
Sau3AI	GATC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	55
SetI	ASST	8 cut(s)	63, 75, 82, 109, 117, 130, 216, 259
SgeI	CNNG	7 cut(s)	40, 53, 65, 71, 218, 278, 287
TspDTI	ATGAA	1 cut(s)	17
XceI	RCATGY	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.