Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

2305710 .. 2306985

Gene Structure 1276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATGAGTTTCATTCTGTCTCAGGAATACTCTATTTCGTCAAGGAGAAACCCTATTGTGAGAAGGAGAGGTCAGCGCTCTCTAAGAAGGCCGAAGCATGATGAGAAGGTGGGACGACATTCTGAAAATCATTTTAATTTCTTTCAGGATTCACCTCTAGTGGGAGCAACACAAACACCGGTGTCAGCACTGTTGAAGAAAGATTCAGATAATATGAATTCACCAAGTGTAATGAATATTTCGAAGCACCATAAAAAGGTAATTCGGGACGAATATGAAGTTGAAACCGGTAATGGAAGAACTATTAAAAGGAAATCAAGAAGCACAGTCATGTTTGAGGGATCTAAGGGAGAGGGTCAACCACGTCCTTCAAACATCGGTAACCTGTTTTCAGAAGGGTCTCTGAATCCATATGCTGATGATCCATATGCATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.64

Weight (kDa)

9.86

Isoelectric Point (pI)

66.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	349, 416
AcsI	RAATTY	1 cut(s)	217
AdeI	CACNNNGTG	1 cut(s)	227
AfeI	AGCGCT	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	161, 256
AgeI	ACCGGT	2 cut(s)	178, 287
AgsI	TTSAA	3 cut(s)	196, 284, 372
AjiI	CACGTC	1 cut(s)	365
Alw26I	GTCTC	2 cut(s)	24, 405
AlwI	GGATC	2 cut(s)	349, 416
Aor51HI	AGCGCT	1 cut(s)	77
AoxI	GGCC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	217
AsiGI	ACCGGT	2 cut(s)	178, 287
AspLEI	GCGC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	144, 213
AsuII	TTCGAA	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	24, 405
BfaI	CTAG	1 cut(s)	158
BfoI	RGCGCY	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	405
BsaWI	WCCGGW	2 cut(s)	178, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 256
Bse118I	RCCGGY	2 cut(s)	178, 287
BseLI	CCNNNNNNNGG	2 cut(s)	161, 256
BseMII	CTCAG	1 cut(s)	35
BshFI	GGCC	1 cut(s)	91
BshTI	ACCGGT	2 cut(s)	178, 287
BsiSI	CCGG	2 cut(s)	179, 288
BslFI	GGGAC	2 cut(s)	126, 281
BslI	CCNNNNNNNGG	2 cut(s)	161, 256
BsmAI	GTCTC	2 cut(s)	24, 405
BsmFI	GGGAC	2 cut(s)	126, 281
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	405
Bsp119I	TTCGAA	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	341, 421
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	1 cut(s)	34
BspPI	GGATC	2 cut(s)	349, 416
BspT104I	TTCGAA	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	405
BsrFI	RCCGGY	2 cut(s)	178, 287
BssAI	RCCGGY	2 cut(s)	178, 287
BssMI	GATC	2 cut(s)	341, 421
Bst4CI	ACNGT	2 cut(s)	192, 328
BstBI	TTCGAA	1 cut(s)	242
BstDEI	CTNAG	3 cut(s)	21, 83, 345
BstEII	GGTNACC	1 cut(s)	380
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	2 cut(s)	344, 424
BstMAI	GTCTC	2 cut(s)	24, 405
BstMBI	GATC	2 cut(s)	341, 421
BstPI	GGTNACC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	341
BsuRI	GGCC	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	365
BtsIMutI	CAGTG	1 cut(s)	188
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	2 cut(s)	178, 287
CspAI	ACCGGT	2 cut(s)	178, 287
CviAII	CATG	2 cut(s)	98, 331
CviJI	RGCY	1 cut(s)	91
CviKI_1	RGCY	1 cut(s)	91
DdeI	CTNAG	3 cut(s)	21, 83, 345
DpnI	GATC	2 cut(s)	343, 423
DpnII	GATC	2 cut(s)	341, 421
DraIII	CACNNNGTG	1 cut(s)	227
Eco31I	GGTCTC	1 cut(s)	405
Eco47III	AGCGCT	1 cut(s)	77
Eco91I	GGTNACC	1 cut(s)	380
EcoO65I	GGTNACC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	433
FaeI	CATG	2 cut(s)	101, 334
FaiI	YATR	9 cut(s)	99, 215, 252, 276, 332, 412, 414, 427, 429
FaqI	GGGAC	2 cut(s)	126, 281
FatI	CATG	2 cut(s)	97, 330
FauNDI	CATATG	2 cut(s)	412, 427
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	91
HapII	CCGG	2 cut(s)	179, 288
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	2 cut(s)	101, 334
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	359
HindII	GTYRAC	1 cut(s)	359
HinfI	GANTC	3 cut(s)	149, 203, 406
HpaII	CCGG	2 cut(s)	179, 288
HphI	GGTGA	2 cut(s)	144, 213
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	4 cut(s)	124, 208, 394, 405
Hpy188III	TCNNGA	4 cut(s)	23, 146, 266, 318
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	5 cut(s)	57, 81, 100, 378, 389
HpyCH4III	ACNGT	2 cut(s)	192, 328
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	1 cut(s)	431
HpyF3I	CTNAG	3 cut(s)	21, 83, 345
HpySE526I	ACGT	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	101, 334
HspAI	GCGC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	341, 421
LmnI	GCTCC	1 cut(s)	164
LpnPI	CCDG	5 cut(s)	8, 131, 192, 301, 398
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	2 cut(s)	343, 423
MboI	GATC	2 cut(s)	341, 421
MboII	GAAGA	2 cut(s)	208, 309
MflI	RGATCY	1 cut(s)	341
MluCI	AATT	3 cut(s)	136, 217, 261
MnlI	CCTC	4 cut(s)	62, 165, 331, 346
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	3 cut(s)	135, 306, 439
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	2 cut(s)	179, 288
NdeI	CATATG	2 cut(s)	412, 427
NdeII	GATC	2 cut(s)	341, 421
NlaIII	CATG	2 cut(s)	101, 334
NsiI	ATGCAT	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	242
PfeI	GAWTC	3 cut(s)	149, 203, 406
PinAI	ACCGGT	2 cut(s)	178, 287
PspEI	GGTNACC	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	3 cut(s)	135, 306, 439
Sau3AI	GATC	2 cut(s)	341, 421
SetI	ASST	6 cut(s)	73, 111, 157, 261, 367, 387
SfuI	TTCGAA	1 cut(s)	242
SgrAI	CRCCGGYG	1 cut(s)	178
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	3 cut(s)	136, 217, 261
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	158
TaaI	ACNGT	2 cut(s)	192, 328
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	242
TasI	AATT	3 cut(s)	136, 217, 261
TfiI	GAWTC	3 cut(s)	149, 203, 406
Tru1I	TTAA	3 cut(s)	135, 306, 439
Tru9I	TTAA	3 cut(s)	135, 306, 439
TscAI	CASTG	1 cut(s)	195
TspDTI	ATGAA	3 cut(s)	230, 248, 291
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	217
XspI	CTAG	1 cut(s)	158
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.