Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

66869037 .. 66872657

Gene Structure 3621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG496800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGATACCTGAGAGAAGAGAAATTACAACAAAAAACACGACGTGTCAAAATAATGAAAATCAATACCATGTAGCTGGAACGTATAGGATAAGTTGGTTTTTTGGAACACATATTGTTAAATCCAAAGATGACTGTATTGAATTATTGGAAAAGCTGGATGCATTGCTTGAGTTATATAATGCAGCACTCATTTGGATTCTGCAAATACTGAATTTGCAATATGTTGTTTTTGTTATGTCGGGATCTAAGGGAGTGGGTCAACCACGTCCTTCAAAAATCGGTGACCGGTTTTCAGAAGGGTCTCTGAATCCATATGCTGATGATCCATATGCATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.93

Weight (kDa)

5.31

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	250, 317
AcsI	RAATTY	1 cut(s)	211
AdeI	CACNNNGTG	1 cut(s)	42
AflIII	ACRYGT	1 cut(s)	41
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	140, 273
AjiI	CACGTC	2 cut(s)	42, 266
AluBI	AGCT	2 cut(s)	74, 154
AluI	AGCT	2 cut(s)	74, 154
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	250, 317
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	211
AsiGI	ACCGGT	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	293
BarI	GAAGNNNNNNTAC	2 cut(s)	7, 39
BbvI	GCAGC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	306
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
BmgBI	CACGTC	2 cut(s)	42, 266
BmsI	GCATC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	285
Bse118I	RCCGGY	1 cut(s)	285
Bse3DI	GCAATG	1 cut(s)	161
BseGI	GGATG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	194
BshTI	ACCGGT	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	306
Bso31I	GGTCTC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	242, 322
BspPI	GGATC	2 cut(s)	250, 317
BspTNI	GGTCTC	1 cut(s)	306
BsrDI	GCAATG	1 cut(s)	161
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssMI	GATC	2 cut(s)	242, 322
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	9, 246
BstEII	GGTNACC	1 cut(s)	281
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	2 cut(s)	245, 325
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	2 cut(s)	242, 322
BstPI	GGTNACC	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	194
BstX2I	RGATCY	1 cut(s)	242
BstXI	CCANNNNNNTGG	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	242
BtrI	CACGTC	2 cut(s)	42, 266
BtsCI	GGATG	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	285
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	2 cut(s)	74, 154
CviKI_1	RGCY	2 cut(s)	74, 154
DdeI	CTNAG	2 cut(s)	9, 246
DpnI	GATC	2 cut(s)	244, 324
DpnII	GATC	2 cut(s)	242, 322
DraIII	CACNNNGTG	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	306
Eco91I	GGTNACC	1 cut(s)	281
EcoO65I	GGTNACC	1 cut(s)	281
EcoT22I	ATGCAT	2 cut(s)	163, 334
FaeI	CATG	1 cut(s)	71
FatI	CATG	1 cut(s)	67
FauNDI	CATATG	2 cut(s)	313, 328
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	183
GluI	GCNGC	1 cut(s)	183
HapII	CCGG	1 cut(s)	286
Hin1II	CATG	1 cut(s)	71
HincII	GTYRAC	1 cut(s)	260
HindII	GTYRAC	1 cut(s)	260
HinfI	GANTC	2 cut(s)	196, 307
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	295, 306
Hpy188III	TCNNGA	1 cut(s)	240
Hpy8I	GTNNAC	1 cut(s)	260
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	2 cut(s)	279, 290
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	3 cut(s)	41, 80, 265
HpyCH4V	TGCA	5 cut(s)	161, 182, 202, 217, 332
HpyF3I	CTNAG	2 cut(s)	9, 246
HpySE526I	ACGT	3 cut(s)	41, 80, 265
Hsp92II	CATG	1 cut(s)	71
Kzo9I	GATC	2 cut(s)	242, 322
LpnPI	CCDG	4 cut(s)	21, 60, 140, 299
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	3 cut(s)	41, 80, 265
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	2 cut(s)	244, 324
MboI	GATC	2 cut(s)	242, 322
MboII	GAAGA	1 cut(s)	27
MflI	RGATCY	1 cut(s)	242
MluCI	AATT	3 cut(s)	21, 140, 211
Mph1103I	ATGCAT	2 cut(s)	163, 334
MseI	TTAA	2 cut(s)	117, 340
MspI	CCGG	1 cut(s)	286
NdeI	CATATG	2 cut(s)	313, 328
NdeII	GATC	2 cut(s)	242, 322
NlaIII	CATG	1 cut(s)	71
NmuCI	GTSAC	1 cut(s)	281
NsiI	ATGCAT	2 cut(s)	163, 334
PfeI	GAWTC	2 cut(s)	196, 307
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	1 cut(s)	184
PspEI	GGTNACC	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	117, 340
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	2 cut(s)	242, 322
SetI	ASST	6 cut(s)	10, 44, 76, 83, 156, 268
SfaNI	GCATC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	21, 140, 211
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	3 cut(s)	44, 83, 268
TasI	AATT	3 cut(s)	21, 140, 211
TfiI	GAWTC	2 cut(s)	196, 307
Tru1I	TTAA	2 cut(s)	117, 340
Tru9I	TTAA	2 cut(s)	117, 340
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	69
XapI	RAATTY	1 cut(s)	211
Zsp2I	ATGCAT	2 cut(s)	163, 334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.