Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGACGGCAGTCATATGTCTTTTCCTTGCAGATGCTATGATTAAGAACTTTGAAGAAACTCTAGCAACTAATAGGTTGGCTACAGAGAGTCTGAACACTAAATTGGGTGAGGTGCATCTTGAGTTAAAGTTGAAAGAGGACGAAATCAGACGTTTGATAACTGGTCAGGAGAACTTGGAAACAGAAAAGTATGATCTTCATATGAGCAACAATGACCTTGTTAAGAGATTAGATATGTCAGTCCTTGAGATAAAGAATCTTGAAGGTTTTGTTCATGTGTTGGCTGCACATTTGGCTGAATTGGACAGAGTTAGTTTGAACTTTCTAGAAAAGTTTGATAAGCTAAACTCTGTCTACGAGGCTTGCTTCCGGTTGGTCAATCAGGAGAGAGACCTTTCTGCCAAGCTTGCTAATAGACAGTATGATCAACTGCACGTCAGGTTCTTGAACTTGACATCAGAAAAAGATGCTATACAATTGGTAAATCAGGAGTTGAACAATAAGGTCATGGAACTTCAGAAAGTTCAGGAGTCTATTATGGCACAACTTTCAGAGGAATGCCGTATAGCCAGGGAGAGGATACAGAAGTTGGAGTTTGAAGCTGAAGCTCTGGTCTCAAAGAAGATTGAAACAGAGAAGTTGGTGTCTGAATTAGAACTGCAAATTGATTCTCTGTCAGAAAGTTCAAGATCATCTGAGAATAAAAGGCAAATTCTGTTGCTGAAAATCTCAGCACTAGAAACTGAGAATAAAGATAATACAGAGAAACTACAAGCAGAGATACAGAAGAAAGCGGAACAAATAGATGGTTTACTGAAGCAAGGTGAAACACATGAGCAGCATGTAGATTTGATGGATAAACAAGTCAGCCAGCTTCATAGCACACTAGAGGAAAAGGAGCAACTTATTGTGCAATATAAGGAACGAGAGAAGAATCTGGAAGAACAGATCACAGAGAATCTTGCATCGCTGACTGCTGCTGAAATTAAACTTGTGGAAGATAAGAAGCACTATGACCTCATGCTTGAGAGTAAACAACTAGAACTGTCAAGGCATTTGAAAGACATATCTCAGAGGAATGACCAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

42.15

Weight (kDa)

5.09

Isoelectric Point (pI)

45.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	1 cut(s)	794
AcsI	RAATTY	1 cut(s)	711
AcuI	CTGAAG	3 cut(s)	500, 624, 836
AfiI	CCNNNNNNNGG	1 cut(s)	576
AjiI	CACGTC	1 cut(s)	436
AjnI	CCWGG	2 cut(s)	569, 1083
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	5 cut(s)	343, 406, 602, 608, 874
AluI	AGCT	5 cut(s)	343, 406, 602, 608, 874
Alw26I	GTCTC	2 cut(s)	384, 619
ApeKI	GCWGC	3 cut(s)	284, 838, 977
ApoI	RAATTY	1 cut(s)	711
AsuHPI	GGTGA	2 cut(s)	119, 836
BaeI	ACNNNNGTAYC	2 cut(s)	572, 605
BbvI	GCAGC	3 cut(s)	271, 850, 964
BccI	CCATC	2 cut(s)	800, 847
BceAI	ACGGC	2 cut(s)	21, 546
BciT130I	CCWGG	2 cut(s)	571, 1085
BciVI	GTATCC	1 cut(s)	573
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	2 cut(s)	384, 619
BfaI	CTAG	5 cut(s)	62, 326, 737, 887, 1040
BfmI	CTRYAG	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	573
BisI	GCNGC	3 cut(s)	285, 839, 978
BlsI	GCNGC	3 cut(s)	286, 840, 979
Bme1390I	CCNGG	2 cut(s)	571, 1085
BmgBI	CACGTC	1 cut(s)	436
BmrFI	CCNGG	2 cut(s)	571, 1085
BmsI	GCATC	4 cut(s)	22, 124, 457, 974
BoxI	GACNNNNGTC	1 cut(s)	8
BpuEI	CTTGAG	3 cut(s)	140, 266, 1046
BsaI	GGTCTC	2 cut(s)	384, 619
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse1I	ACTGG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	571, 1085
BseDI	CCNNGG	1 cut(s)	570
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMII	CTCAG	4 cut(s)	687, 735, 744, 1085
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	271, 850, 964
BsgI	GTGCAG	2 cut(s)	270, 416
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmAI	GTCTC	2 cut(s)	384, 619
BsmI	GAATGC	1 cut(s)	563
Bso31I	GGTCTC	2 cut(s)	384, 619
Bsp143I	GATC	4 cut(s)	193, 424, 689, 948
BspACI	CCGC	1 cut(s)	794
BspCNI	CTCAG	4 cut(s)	688, 736, 743, 1084
BspTNI	GGTCTC	2 cut(s)	384, 619
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	4 cut(s)	193, 424, 689, 948
Bst2UI	CCWGG	2 cut(s)	571, 1085
Bst4CI	ACNGT	2 cut(s)	420, 1047
BstC8I	GCNNGC	3 cut(s)	364, 408, 872
BstDEI	CTNAG	4 cut(s)	696, 730, 744, 1071
BstKTI	GATC	4 cut(s)	196, 427, 692, 951
BstMAI	GTCTC	2 cut(s)	384, 619
BstMBI	GATC	4 cut(s)	193, 424, 689, 948
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 407
BstNI	CCWGG	2 cut(s)	571, 1085
BstNSI	RCATGY	1 cut(s)	845
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	569, 1083
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	271, 850, 964
BsuI	GTATCC	1 cut(s)	573
BtgZI	GCGATG	1 cut(s)	951
BtrI	CACGTC	1 cut(s)	436
Cac8I	GCNNGC	3 cut(s)	364, 408, 872
CsiI	ACCWGGT	1 cut(s)	1083
CviAII	CATG	5 cut(s)	275, 508, 833, 842, 1021
DdeI	CTNAG	4 cut(s)	696, 730, 744, 1071
DpnI	GATC	4 cut(s)	195, 426, 691, 950
DpnII	GATC	4 cut(s)	193, 424, 689, 948
Eco31I	GGTCTC	2 cut(s)	384, 619
Eco57I	CTGAAG	3 cut(s)	500, 624, 836
EcoRII	CCWGG	2 cut(s)	569, 1083
FaeI	CATG	5 cut(s)	278, 511, 836, 845, 1024
FatI	CATG	5 cut(s)	274, 507, 832, 841, 1020
FauNDI	CATATG	2 cut(s)	14, 201
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	285, 839, 978
Fsp4HI	GCNGC	3 cut(s)	285, 839, 978
FspBI	CTAG	5 cut(s)	62, 326, 737, 887, 1040
GluI	GCNGC	3 cut(s)	285, 839, 978
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	5 cut(s)	278, 511, 836, 845, 1024
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	6 cut(s)	88, 256, 530, 668, 934, 958
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	119, 836
Hpy166II	GTNNAC	3 cut(s)	355, 812, 1034
Hpy8I	GTNNAC	3 cut(s)	355, 812, 1034
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	420, 1047
HpyCH4IV	ACGT	2 cut(s)	151, 435
HpyCH4V	TGCA	7 cut(s)	29, 115, 287, 433, 661, 913, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 407
HpyF3I	CTNAG	4 cut(s)	696, 730, 744, 1071
HpySE526I	ACGT	2 cut(s)	151, 435
Hsp92II	CATG	5 cut(s)	278, 511, 836, 845, 1024
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	193, 424, 689, 948
LmnI	GCTCC	1 cut(s)	898
Lsp1109I	GCAGC	3 cut(s)	271, 850, 964
LweI	GCATC	4 cut(s)	22, 124, 457, 974
MabI	ACCWGGT	1 cut(s)	1083
MaeI	CTAG	5 cut(s)	62, 326, 737, 887, 1040
MaeII	ACGT	2 cut(s)	151, 435
MalI	GATC	4 cut(s)	195, 426, 691, 950
MboI	GATC	4 cut(s)	193, 424, 689, 948
MboII	GAAGA	7 cut(s)	65, 188, 634, 799, 943, 953, 1010
MfeI	CAATTG	1 cut(s)	476
MluCI	AATT	7 cut(s)	101, 299, 476, 650, 663, 711, 984
MlyI	GAGTC	2 cut(s)	97, 539
MmeI	TCCRAC	1 cut(s)	570
MnlI	CCTC	8 cut(s)	103, 130, 352, 547, 570, 883, 1028, 1068
MseI	TTAA	4 cut(s)	42, 125, 222, 987
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	571, 1085
MunI	CAATTG	1 cut(s)	476
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	2 cut(s)	571, 1085
MwoI	GCNNNNNNNGC	2 cut(s)	293, 407
NdeI	CATATG	2 cut(s)	14, 201
NdeII	GATC	4 cut(s)	193, 424, 689, 948
NlaIII	CATG	5 cut(s)	278, 511, 836, 845, 1024
NspI	RCATGY	1 cut(s)	845
PctI	GAATGC	1 cut(s)	563
PfeI	GAWTC	4 cut(s)	256, 668, 934, 958
PflFI	GACNNNGTC	1 cut(s)	1085
PkrI	GCNGC	3 cut(s)	286, 840, 979
PleI	GAGTC	2 cut(s)	96, 538
PpsI	GAGTC	2 cut(s)	96, 538
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	569, 1083
PspGI	CCWGG	2 cut(s)	569, 1083
PsyI	GACNNNGTC	1 cut(s)	1085
SaqAI	TTAA	4 cut(s)	42, 125, 222, 987
SatI	GCNGC	3 cut(s)	285, 839, 978
Sau3AI	GATC	4 cut(s)	193, 424, 689, 948
SchI	GAGTC	2 cut(s)	97, 539
ScrFI	CCNGG	2 cut(s)	571, 1085
SexAI	ACCWGGT	1 cut(s)	1083
SfaNI	GCATC	4 cut(s)	22, 124, 457, 974
SfcI	CTRYAG	1 cut(s)	81
SmlI	CTYRAG	3 cut(s)	119, 245, 1025
SmoI	CTYRAG	3 cut(s)	119, 245, 1025
Sse9I	AATT	7 cut(s)	101, 299, 476, 650, 663, 711, 984
SsiI	CCGC	1 cut(s)	794
SspMI	CTAG	5 cut(s)	62, 326, 737, 887, 1040
StyD4I	CCNGG	2 cut(s)	569, 1083
TaaI	ACNGT	2 cut(s)	420, 1047
TaiI	ACGT	2 cut(s)	154, 438
TasI	AATT	7 cut(s)	101, 299, 476, 650, 663, 711, 984
TfiI	GAWTC	4 cut(s)	256, 668, 934, 958
Tru1I	TTAA	4 cut(s)	42, 125, 222, 987
Tru9I	TTAA	4 cut(s)	42, 125, 222, 987
TseI	GCWGC	3 cut(s)	284, 838, 977
TspDTI	ATGAA	3 cut(s)	188, 263, 866
Tth111I	GACNNNGTC	1 cut(s)	1085
XapI	RAATTY	1 cut(s)	711
XbaI	TCTAGA	1 cut(s)	325
XceI	RCATGY	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	5 cut(s)	62, 326, 737, 887, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.