Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

4187752 .. 4194798

Gene Structure 7047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00221390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2547 bp

ATGCAGAAGCTAGGGTTTCCGAGCATGAGGAGCTTGGATCAGTTCAAGTCCCTCTCGAAATCGGTCTCAGGAGGACCTCCGAAGACCTTCGCCTACTCTTCGCGTCCGCCGGAGTCGGCCTCGTCGGGAAGCTTCGCTAACTTGAAGCTCACCGCAGCTGAAAAAATCAATGGAGCACATCCGTGCATTAGAGGAAAATTGCAGAACGCTTTCAATGAAAATGCTAAGTTTAAGGTGAAGCAGAAGGAAGATGAGAAGCTGTGGAAGGGATTAGAGTCTAAGTTTTCTTCAACTAAAACATTGTGTGATCAACTCACAGAAACTTTACAGCTCTTAGCTGGTCAAGTCCAGGATGCTGAGAAAGATAAAGAGTCCTTTGAAGGCAAACTCTCTGCGAGTGCAGTAGCTCTTGACGGTTTGAGCCAACAAATGAATGATCTGTCTATAAAGCTAGAGTCAGCAGAGGAAACTATAAGGAATCGTGAAAAGGAGCTGGAGGAACACAGACTCGAGAAAGAGGAAACAGATAAACTTCACAGAAATGAACAGTGCAGAACTGCAAATCTTATAGAGGAAAAAGATTCTATGATTAAGAACTTTGAAGAAACTCTAGCAACTAGTAGGTTGGCTACAGAGAGTTTGAACACTAAATTGGGTGAGGTGCATCTTGAGTTGAAGTTAAAAGAGGATGAAATCAGACGTTTGATAACTGCTCAGGAGAAATTGGAAGCAGAAAAGCATGATCTCCATCTAAGCAACGATGACCTTGTTAAGAGATTAGATATGTCAGTCCTTGAGATAAAGAACCTTGAAGGTTTTGTTCATGTGTTAGCTGCACATTTGGCTGAATTGGATAAACAAAGTTTGAACTTTCTAGAAAAGTTCAATAAGCTGAACTCTCTCTATGAGGCGTGCTTCCAGTTAGTCAATCAGGAGAGAGATCTTTCTGCTAAGCTTGCTCAGAGACAGTATGATCAACTGCACGACAGTTTCTTGAACTTAACATCAGAAAAAGATGCTATACAATTGGTAAATCAGGAGTTGAACAATAAGGTCATGGAACTTCAGAAAATTCAGGAGTCTATTATGGCACAACTTTCGGAGGAAAGCTGTACAGCCAGAGAAAGGATACAGAAGTTGGAGTTTGAAACTGAAGCTCTGGTCTCAAAGAAGATTGAAACAGAGAAGTTGGTGTCTGAATTAGAACTGCAAATTGATTCTCTGTCTGAAAGTTCAAGATCATCTGAGAATAAAATGCAAAATCTGTTGCTGAAAATCTCAGCACTTGAAACTGAGAATAAAGATAATACAGAGAAACTACAAGCAGAGATACAGAAGAAAGCAGAACGAATAGATGGTTTACTGAAGGAAGGTGAAACACATGAGCAGCATGTAGATTTGATGGATAAACAAGTCAGCCAGCTTCATAGCACACTAGAGGAAAAGGAGCAACTTATTGTGCAATATAAGGAACGAGAGAAGAATCTGGAAGAACAGATCACAGAGAATCATGCATCCCTGACTGCTGCTGAAACTAGACTTGTGGAAGATAAGAAGCAATATGACCTCATGCTTGAGAGTAAACAACTAGAACTGTCAAGGCATTTGAAAGACATATCACAGAGGAATGATCAGGCAATTAATGACATCCGGAAGAAGTATGAGGTGGAGAAGCTGGAGATAGTTAACATGGAAAAGCAAAAGGCGGAAAATCTTGTTCGAGACAGGGAGATAGAATGTGAGAAAAAAATTGAAGAATGCAAAGAAGAATATAGGCAGCACTTGATGCATTTTCAGGAGGAACATGCTGCACTGGTCAATAGTCTTCAGCAGGAACATGATAAAAAGGAACAAAATTTAAAAGATAAACACAGTGAACAGCTAAAGCAGATCCAACTTCAAGCTGAAAATGAGTTGAGAGAGAAATTAACATCAATGAGGAATGAACATGAAGCCCAACTGAGAGCTTTGAGGCTTCAGCATGAAGATGAGATTAAGAAGCTTCAGGAGGACTTGGATCTTCAAAAGTCCAAAGAGGAGAAGCAGAGGGCATTACTGCAATTGCAGTGGAAAGTTATGAGCAATAAGCCAGAGGAGGAGCAAGAAGAATACTCTATTTCGTCAAGGAGAAACCCTGTTGTGAGAAGGAGAGGTCAGCGTTCTCTAAGAAGACCAGAGCATGATGAGAAGGATTCACCTCTAGTGGGAGCAAAACAAACACCAGTGTCAACACTGTTGAAGAAAGCTTCAGAGAATATGAATTCACCAAGTGTGATGAATATTTCAAAGCACCATAACAAGGTAATTCGGGACGAATATGAAGTTGAAACTGGTAATGGAAGAACTATTAAAAGGAAATCAAGAAGCACAGTCATGTTTGAGGATCCAAGAAAACATAAGAGGACAAGTACACCTAAAGTCAAAAGCCCCAGGAGTGTAGTCAAGGGATCTAAGCGAGAGGGTCAACCACGTCCTTCAAACATCGGTGACCTGTTTTCAGAAGGGTCTCTGAATCCATATGCTGATGATCCATATGCATTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

848

Amino Acids

98.16

Weight (kDa)

5.87

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AccIII	TCCGGA	1 cut(s)	1650
AciI	CCGC	3 cut(s)	107, 153, 1706
AclWI	GGATC	7 cut(s)	45, 1885, 2025, 2378, 2391, 2455, 2522
AcsI	RAATTY	3 cut(s)	1071, 1855, 2260
AcuI	CTGAAG	7 cut(s)	1049, 1173, 1385, 1811, 1961, 1988, 2232
AdeI	CACNNNGTG	1 cut(s)	2270
AfaI	GTAC	2 cut(s)	1114, 2410
AfiI	CCNNNNNNNGG	3 cut(s)	1125, 2204, 2299
AhlI	ACTAGT	1 cut(s)	617
AjiI	CACGTC	1 cut(s)	2471
AjnI	CCWGG	2 cut(s)	348, 2429
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AleI	CACNNNNGTG	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	5 cut(s)	70, 958, 1168, 1716, 2511
AlwI	GGATC	7 cut(s)	45, 1885, 2025, 2378, 2391, 2455, 2522
Ama87I	CYCGRG	1 cut(s)	509
Aor13HI	TCCGGA	1 cut(s)	1650
AoxI	GGCC	1 cut(s)	117
ApeKI	GCWGC	6 cut(s)	155, 833, 1387, 1526, 1777, 1808
ApoI	RAATTY	3 cut(s)	1071, 1855, 2260
AseI	ATTAAT	1 cut(s)	1641
Asp700I	GAANNNNTTC	2 cut(s)	86, 209
AspS9I	GGNCC	1 cut(s)	74
AsuHPI	GGTGA	7 cut(s)	142, 247, 668, 1385, 2187, 2256, 2498
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	74
BaeI	ACNNNNGTAYC	2 cut(s)	1121, 1154
BamHI	GGATCC	1 cut(s)	2383
BbsI	GAAGAC	3 cut(s)	89, 1817, 2176
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	6 cut(s)	167, 820, 1399, 1513, 1789, 1795
BccI	CCATC	3 cut(s)	756, 1349, 1396
BcgI	CGANNNNNNTGC	2 cut(s)	1080, 1114
BciT130I	CCWGG	2 cut(s)	350, 2431
BciVI	GTATCC	1 cut(s)	1122
BclI	TGATCA	3 cut(s)	307, 973, 1630
BcoDI	GTCTC	5 cut(s)	70, 958, 1168, 1716, 2511
BcuI	ACTAGT	1 cut(s)	617
BfaI	CTAG	9 cut(s)	11, 452, 611, 618, 875, 1436, 1536, 1589, 2201
BfmI	CTRYAG	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	1122
BglII	AGATCT	1 cut(s)	940
BisI	GCNGC	6 cut(s)	156, 834, 1388, 1527, 1778, 1809
BlpI	GCTNAGC	1 cut(s)	951
BlsI	GCNGC	6 cut(s)	157, 835, 1389, 1528, 1779, 1810
Bme1390I	CCNGG	2 cut(s)	350, 2431
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	2471
BmgT120I	GGNCC	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	2385
BmrFI	CCNGG	2 cut(s)	350, 2431
BmsI	GCATC	5 cut(s)	343, 673, 1006, 1523, 1776
BpiI	GAAGAC	3 cut(s)	89, 1817, 2176
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	2 cut(s)	515, 1697
Bpu10I	CCTNAGC	1 cut(s)	714
Bpu1102I	GCTNAGC	1 cut(s)	951
BpuEI	CTTGAG	3 cut(s)	689, 815, 1595
BsaBI	GATNNNNATC	1 cut(s)	747
BsaI	GGTCTC	3 cut(s)	70, 1168, 2511
BsaJI	CCNNGG	1 cut(s)	2429
BsaWI	WCCGGW	1 cut(s)	1650
Bsc4I	CCNNNNNNNGG	3 cut(s)	1125, 2204, 2299
Bse1I	ACTGG	4 cut(s)	919, 1818, 2222, 2335
Bse8I	GATNNNNATC	1 cut(s)	747
BseAI	TCCGGA	1 cut(s)	1650
BseBI	CCWGG	2 cut(s)	350, 2431
BseDI	CCNNGG	1 cut(s)	2429
BseGI	GGATG	5 cut(s)	178, 358, 694, 1514, 1647
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	3 cut(s)	1125, 2204, 2299
BseMII	CTCAG	8 cut(s)	81, 348, 728, 974, 1236, 1284, 1293, 1952
BseNI	ACTGG	4 cut(s)	919, 1818, 2222, 2335
BseRI	GAGGAG	4 cut(s)	43, 2051, 2108, 2111
BseXI	GCAGC	6 cut(s)	167, 820, 1399, 1513, 1789, 1795
BsgI	GTGCAG	5 cut(s)	420, 571, 819, 965, 1794
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	2 cut(s)	110, 1651
BslFI	GGGAC	2 cut(s)	34, 2324
BslI	CCNNNNNNNGG	3 cut(s)	1125, 2204, 2299
BsmAI	GTCTC	5 cut(s)	70, 958, 1168, 1716, 2511
BsmFI	GGGAC	2 cut(s)	34, 2324
BsmI	GAATGC	1 cut(s)	1763
BsnI	GGCC	1 cut(s)	119
Bso31I	GGTCTC	3 cut(s)	70, 1168, 2511
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp13I	TCCGGA	1 cut(s)	1650
Bsp1407I	TGTACA	1 cut(s)	1112
Bsp1720I	GCTNAGC	1 cut(s)	951
BspACI	CCGC	3 cut(s)	107, 153, 1706
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	8 cut(s)	80, 349, 727, 973, 1237, 1285, 1292, 1953
BspEI	TCCGGA	1 cut(s)	1650
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	2385
BspPI	GGATC	7 cut(s)	45, 1885, 2025, 2378, 2391, 2455, 2522
BspTNI	GGTCTC	3 cut(s)	70, 1168, 2511
BsrGI	TGTACA	1 cut(s)	1112
BsrI	ACTGG	4 cut(s)	919, 1818, 2222, 2335
BssECI	CCNNGG	1 cut(s)	2429
Bst2UI	CCWGG	2 cut(s)	350, 2431
Bst4CI	ACNGT	8 cut(s)	416, 549, 969, 989, 1596, 1874, 2235, 2371
Bst6I	CTCTTC	1 cut(s)	103
BstAPI	GCANNNNNTGC	1 cut(s)	1786
BstAUI	TGTACA	1 cut(s)	1112
BstC8I	GCNNGC	3 cut(s)	913, 957, 1421
BstEII	GGTNACC	1 cut(s)	2486
BstF5I	GGATG	5 cut(s)	178, 358, 694, 1514, 1647
BstFNI	CGCG	1 cut(s)	103
BstMAI	GTCTC	5 cut(s)	70, 958, 1168, 1716, 2511
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 842, 956, 1786
BstNI	CCWGG	2 cut(s)	350, 2431
BstNSI	RCATGY	2 cut(s)	1394, 1808
BstPI	GGTNACC	1 cut(s)	2486
BstSCI	CCNGG	2 cut(s)	348, 2429
BstSFI	CTRYAG	1 cut(s)	630
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	6 cut(s)	167, 820, 1399, 1513, 1789, 1795
BstV2I	GAAGAC	3 cut(s)	89, 1817, 2176
BstX2I	RGATCY	5 cut(s)	940, 1890, 2017, 2383, 2447
BstYI	RGATCY	5 cut(s)	940, 1890, 2017, 2383, 2447
BsuI	GTATCC	1 cut(s)	1122
BsuRI	GGCC	1 cut(s)	119
BtrI	CACGTC	1 cut(s)	2471
BtsCI	GGATG	5 cut(s)	178, 358, 694, 1514, 1647
BtsI	GCAGTG	1 cut(s)	2072
BtsIMutI	CAGTG	6 cut(s)	554, 1811, 1879, 2072, 2229, 2231
Cac8I	GCNNGC	3 cut(s)	913, 957, 1421
Cfr13I	GGNCC	1 cut(s)	74
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	1113, 2409
CspCI	CAANNNNNGTGG	2 cut(s)	2048, 2083
CviQI	GTAC	2 cut(s)	1113, 2409
DraI	TTTAAA	1 cut(s)	1860
DraIII	CACNNNGTG	1 cut(s)	2270
Eam1104I	CTCTTC	1 cut(s)	103
EarI	CTCTTC	1 cut(s)	103
EciI	GGCGGA	2 cut(s)	96, 1721
Eco31I	GGTCTC	3 cut(s)	70, 1168, 2511
Eco47I	GGWCC	1 cut(s)	74
Eco57I	CTGAAG	7 cut(s)	1049, 1173, 1385, 1811, 1961, 1988, 2232
Eco88I	CYCGRG	1 cut(s)	509
Eco91I	GGTNACC	1 cut(s)	2486
EcoO109I	RGGNCCY	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	2486
EcoRI	GAATTC	1 cut(s)	2260
EcoRII	CCWGG	2 cut(s)	348, 2429
EcoT22I	ATGCAT	3 cut(s)	1516, 1791, 2539
FaqI	GGGAC	2 cut(s)	34, 2324
FauNDI	CATATG	2 cut(s)	2518, 2533
FbaI	TGATCA	3 cut(s)	307, 973, 1630
Fnu4HI	GCNGC	6 cut(s)	156, 834, 1388, 1527, 1778, 1809
FokI	GGATG	5 cut(s)	165, 365, 701, 1501, 1634
Fsp4HI	GCNGC	6 cut(s)	156, 834, 1388, 1527, 1778, 1809
FspBI	CTAG	9 cut(s)	11, 452, 611, 618, 875, 1436, 1536, 1589, 2201
GluI	GCNGC	6 cut(s)	156, 834, 1388, 1527, 1778, 1809
GsuI	CTGGAG	2 cut(s)	515, 1697
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	2 cut(s)	110, 1651
HgaI	GACGC	1 cut(s)	92
HincII	GTYRAC	3 cut(s)	1687, 2229, 2465
HindII	GTYRAC	3 cut(s)	1687, 2229, 2465
HindIII	AAGCTT	4 cut(s)	130, 953, 2000, 2244
HpaI	GTTAAC	1 cut(s)	1687
HpaII	CCGG	2 cut(s)	110, 1651
HphI	GGTGA	7 cut(s)	142, 247, 668, 1385, 2187, 2256, 2498
Hpy166II	GTNNAC	7 cut(s)	1361, 1583, 1687, 1877, 2229, 2411, 2465
Hpy8I	GTNNAC	7 cut(s)	1361, 1583, 1687, 1877, 2229, 2411, 2465
Hpy99I	CGWCG	1 cut(s)	127
HpyCH4III	ACNGT	8 cut(s)	416, 549, 969, 989, 1596, 1874, 2235, 2371
HpyCH4IV	ACGT	2 cut(s)	700, 2470
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 842, 956, 1786
HpySE526I	ACGT	2 cut(s)	700, 2470
Kpn2I	TCCGGA	1 cut(s)	1650
Ksp22I	TGATCA	3 cut(s)	307, 973, 1630
KspAI	GTTAAC	1 cut(s)	1687
LmnI	GCTCC	6 cut(s)	30, 173, 490, 1447, 2098, 2207
Lsp1109I	GCAGC	6 cut(s)	167, 820, 1399, 1513, 1789, 1795
LweI	GCATC	5 cut(s)	343, 673, 1006, 1523, 1776
MaeI	CTAG	9 cut(s)	11, 452, 611, 618, 875, 1436, 1536, 1589, 2201
MaeII	ACGT	2 cut(s)	700, 2470
MaeIII	GTNAC	1 cut(s)	2486
MfeI	CAATTG	2 cut(s)	1025, 2060
MflI	RGATCY	5 cut(s)	940, 1890, 2017, 2383, 2447
MhlI	GDGCHC	1 cut(s)	178
MlyI	GAGTC	6 cut(s)	122, 284, 380, 464, 501, 1088
MmeI	TCCRAC	2 cut(s)	1119, 1918
Mph1103I	ATGCAT	3 cut(s)	1516, 1791, 2539
MroI	TCCGGA	1 cut(s)	1650
MroXI	GAANNNNTTC	2 cut(s)	86, 209
MslI	CAYNNNNRTG	4 cut(s)	181, 540, 1986, 2372
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	2 cut(s)	110, 1651
MspR9I	CCNGG	2 cut(s)	350, 2431
MunI	CAATTG	2 cut(s)	1025, 2060
Mva1269I	GAATGC	1 cut(s)	1763
MvaI	CCWGG	2 cut(s)	350, 2431
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	4 cut(s)	30, 842, 956, 1786
NdeI	CATATG	2 cut(s)	2518, 2533
NlaIV	GGNNCC	1 cut(s)	2385
NmuCI	GTSAC	1 cut(s)	2486
NsiI	ATGCAT	3 cut(s)	1516, 1791, 2539
NspI	RCATGY	2 cut(s)	1394, 1808
OliI	CACNNNNGTG	1 cut(s)	181
PaeR7I	CTCGAG	1 cut(s)	509
PctI	GAATGC	1 cut(s)	1763
PdmI	GAANNNNTTC	2 cut(s)	86, 209
PfeI	GAWTC	7 cut(s)	478, 581, 1217, 1483, 1507, 2192, 2512
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	6 cut(s)	157, 835, 1389, 1528, 1779, 1810
PleI	GAGTC	6 cut(s)	121, 283, 379, 463, 501, 1087
PpsI	GAGTC	6 cut(s)	121, 283, 379, 463, 501, 1087
PpuMI	RGGWCCY	1 cut(s)	74
PshBI	ATTAAT	1 cut(s)	1641
Psp5II	RGGWCCY	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	348, 2429
PspEI	GGTNACC	1 cut(s)	2486
PspGI	CCWGG	2 cut(s)	348, 2429
PspN4I	GGNNCC	1 cut(s)	2385
PspPI	GGNCC	1 cut(s)	74
PspPPI	RGGWCCY	1 cut(s)	74
PsuI	RGATCY	5 cut(s)	940, 1890, 2017, 2383, 2447
PvuII	CAGCTG	1 cut(s)	158
RsaI	GTAC	2 cut(s)	1114, 2410
RsaNI	GTAC	2 cut(s)	1113, 2409
RseI	CAYNNNNRTG	4 cut(s)	181, 540, 1986, 2372
SatI	GCNGC	6 cut(s)	156, 834, 1388, 1527, 1778, 1809
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	6 cut(s)	122, 284, 380, 464, 501, 1088
ScrFI	CCNGG	2 cut(s)	350, 2431
SduI	GDGCHC	1 cut(s)	178
SfaNI	GCATC	5 cut(s)	343, 673, 1006, 1523, 1776
SfcI	CTRYAG	1 cut(s)	630
Sfr274I	CTCGAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	4 cut(s)	181, 540, 1986, 2372
SmlI	CTYRAG	4 cut(s)	509, 668, 794, 1574
SmoI	CTYRAG	4 cut(s)	509, 668, 794, 1574
SpeI	ACTAGT	1 cut(s)	617
SsiI	CCGC	3 cut(s)	107, 153, 1706
SspI	AATATT	1 cut(s)	2281
SspMI	CTAG	9 cut(s)	11, 452, 611, 618, 875, 1436, 1536, 1589, 2201
StyD4I	CCNGG	2 cut(s)	348, 2429
TaaI	ACNGT	8 cut(s)	416, 549, 969, 989, 1596, 1874, 2235, 2371
TaiI	ACGT	2 cut(s)	703, 2473
TaqI	TCGA	3 cut(s)	56, 510, 1720
TaqII	GACCGA	1 cut(s)	52
TatI	WGTACW	2 cut(s)	1112, 2408
TfiI	GAWTC	7 cut(s)	478, 581, 1217, 1483, 1507, 2192, 2512
TscAI	CASTG	6 cut(s)	554, 1818, 1879, 2072, 2229, 2238
TseFI	GTSAC	1 cut(s)	2486
TseI	GCWGC	6 cut(s)	155, 833, 1387, 1526, 1777, 1808
Tsp45I	GTSAC	1 cut(s)	2486
TspGWI	ACGGA	1 cut(s)	171
TspRI	CASTG	6 cut(s)	554, 1818, 1879, 2072, 2229, 2238
VpaK11BI	GGWCC	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	1641
XapI	RAATTY	3 cut(s)	1071, 1855, 2260
XbaI	TCTAGA	1 cut(s)	874
XceI	RCATGY	2 cut(s)	1394, 1808
XhoI	CTCGAG	1 cut(s)	509
XmnI	GAANNNNTTC	2 cut(s)	86, 209
XspI	CTAG	9 cut(s)	11, 452, 611, 618, 875, 1436, 1536, 1589, 2201
Zsp2I	ATGCAT	3 cut(s)	1516, 1791, 2539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.