Synaptonemal complex protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 116 |
| AccII | CGCG | 1 cut(s) | 103 |
| AccIII | TCCGGA | 1 cut(s) | 1710 |
| AciI | CCGC | 3 cut(s) | 107, 153, 719 |
| AclWI | GGATC | 3 cut(s) | 45, 1834, 1974 |
| AcsI | RAATTY | 3 cut(s) | 922, 1131, 1804 |
| AcuI | CTGAAG | 6 cut(s) | 1109, 1233, 1445, 1760, 1910, 1937 |
| AfaI | GTAC | 1 cut(s) | 1174 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1185 |
| AjnI | CCWGG | 1 cut(s) | 408 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 695, 727 |
| AleI | CACNNNNGTG | 1 cut(s) | 240 |
| Alw21I | GWGCWC | 1 cut(s) | 237 |
| Alw26I | GTCTC | 2 cut(s) | 1018, 1228 |
| AlwI | GGATC | 3 cut(s) | 45, 1834, 1974 |
| Ama87I | CYCGRG | 1 cut(s) | 569 |
| Aor13HI | TCCGGA | 1 cut(s) | 1710 |
| ApeKI | GCWGC | 5 cut(s) | 413, 893, 1447, 1586, 2060 |
| ApoI | RAATTY | 3 cut(s) | 922, 1131, 1804 |
| AseI | ATTAAT | 1 cut(s) | 1701 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 86, 269 |
| AspS9I | GGNCC | 1 cut(s) | 74 |
| AsuHPI | GGTGA | 3 cut(s) | 82, 142, 1445 |
| AvaI | CYCGRG | 1 cut(s) | 569 |
| AvaII | GGWCC | 1 cut(s) | 74 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1181, 1214 |
| BbsI | GAAGAC | 2 cut(s) | 89, 1766 |
| Bbv12I | GWGCWC | 1 cut(s) | 237 |
| BbvI | GCAGC | 5 cut(s) | 400, 880, 1459, 1573, 2072 |
| BccI | CCATC | 4 cut(s) | 467, 816, 1409, 1456 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1140, 1174 |
| BciT130I | CCWGG | 1 cut(s) | 410 |
| BciVI | GTATCC | 1 cut(s) | 1182 |
| BclI | TGATCA | 3 cut(s) | 367, 1033, 1690 |
| BcoDI | GTCTC | 2 cut(s) | 1018, 1228 |
| BfaI | CTAG | 8 cut(s) | 11, 512, 671, 935, 1346, 1496, 1596, 1649 |
| BfmI | CTRYAG | 1 cut(s) | 690 |
| BfuI | GTATCC | 1 cut(s) | 1182 |
| BglII | AGATCT | 2 cut(s) | 193, 1000 |
| BisI | GCNGC | 5 cut(s) | 414, 894, 1448, 1587, 2061 |
| BlpI | GCTNAGC | 1 cut(s) | 1011 |
| BlsI | GCNGC | 5 cut(s) | 415, 895, 1449, 1588, 2062 |
| Bme1390I | CCNGG | 1 cut(s) | 410 |
| Bme18I | GGWCC | 1 cut(s) | 74 |
| BmeT110I | CYCGRG | 1 cut(s) | 569 |
| BmgT120I | GGNCC | 1 cut(s) | 74 |
| BmrFI | CCNGG | 1 cut(s) | 410 |
| BmsI | GCATC | 3 cut(s) | 733, 1066, 1583 |
| BpiI | GAAGAC | 2 cut(s) | 89, 1766 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 104, 136 |
| BpmI | CTGGAG | 2 cut(s) | 575, 1757 |
| Bpu10I | CCTNAGC | 1 cut(s) | 774 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1011 |
| BpuEI | CTTGAG | 3 cut(s) | 749, 875, 1655 |
| BsaBI | GATNNNNATC | 1 cut(s) | 807 |
| BsaI | GGTCTC | 1 cut(s) | 1228 |
| BsaWI | WCCGGW | 1 cut(s) | 1710 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1185 |
| Bse1I | ACTGG | 1 cut(s) | 979 |
| Bse8I | GATNNNNATC | 1 cut(s) | 807 |
| BseAI | TCCGGA | 1 cut(s) | 1710 |
| BseBI | CCWGG | 1 cut(s) | 410 |
| BseGI | GGATG | 4 cut(s) | 237, 754, 1574, 1707 |
| BseJI | GATNNNNATC | 1 cut(s) | 807 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1185 |
| BseMII | CTCAG | 7 cut(s) | 408, 788, 1034, 1296, 1344, 1353, 1901 |
| BseNI | ACTGG | 1 cut(s) | 979 |
| BseRI | GAGGAG | 4 cut(s) | 593, 2000, 2057, 2060 |
| BseXI | GCAGC | 5 cut(s) | 400, 880, 1459, 1573, 2072 |
| BsgI | GTGCAG | 3 cut(s) | 480, 631, 879 |
| Bsh1236I | CGCG | 1 cut(s) | 103 |
| BsiHKAI | GWGCWC | 1 cut(s) | 237 |
| BsiHKCI | CYCGRG | 1 cut(s) | 569 |
| BsiSI | CCGG | 2 cut(s) | 110, 1711 |
| BslFI | GGGAC | 1 cut(s) | 34 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1185 |
| BsmAI | GTCTC | 2 cut(s) | 1018, 1228 |
| BsmFI | GGGAC | 1 cut(s) | 34 |
| Bso31I | GGTCTC | 1 cut(s) | 1228 |
| BsoBI | CYCGRG | 1 cut(s) | 569 |
| Bsp1286I | GDGCHC | 1 cut(s) | 237 |
| Bsp13I | TCCGGA | 1 cut(s) | 1710 |
| Bsp1407I | TGTACA | 1 cut(s) | 1172 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1011 |
| BspACI | CCGC | 3 cut(s) | 107, 153, 719 |
| BspCNI | CTCAG | 7 cut(s) | 409, 787, 1033, 1297, 1345, 1352, 1902 |
| BspEI | TCCGGA | 1 cut(s) | 1710 |
| BspFNI | CGCG | 1 cut(s) | 103 |
| BspPI | GGATC | 3 cut(s) | 45, 1834, 1974 |
| BspTNI | GGTCTC | 1 cut(s) | 1228 |
| BsrGI | TGTACA | 1 cut(s) | 1172 |
| BsrI | ACTGG | 1 cut(s) | 979 |
| Bst2UI | CCWGG | 1 cut(s) | 410 |
| Bst4CI | ACNGT | 5 cut(s) | 609, 1029, 1049, 1656, 1823 |
| Bst6I | CTCTTC | 1 cut(s) | 103 |
| BstAUI | TGTACA | 1 cut(s) | 1172 |
| BstC8I | GCNNGC | 3 cut(s) | 177, 1017, 1481 |
| BstF5I | GGATG | 4 cut(s) | 237, 754, 1574, 1707 |
| BstFNI | CGCG | 1 cut(s) | 103 |
| BstMAI | GTCTC | 2 cut(s) | 1018, 1228 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 30, 902, 1016 |
| BstNI | CCWGG | 1 cut(s) | 410 |
| BstNSI | RCATGY | 1 cut(s) | 1454 |
| BstSCI | CCNGG | 1 cut(s) | 408 |
| BstSFI | CTRYAG | 1 cut(s) | 690 |
| BstUI | CGCG | 1 cut(s) | 103 |
| BstV1I | GCAGC | 5 cut(s) | 400, 880, 1459, 1573, 2072 |
| BstV2I | GAAGAC | 2 cut(s) | 89, 1766 |
| BstX2I | RGATCY | 4 cut(s) | 193, 1000, 1839, 1966 |
| BstYI | RGATCY | 4 cut(s) | 193, 1000, 1839, 1966 |
| BsuI | GTATCC | 1 cut(s) | 1182 |
| BtsCI | GGATG | 4 cut(s) | 237, 754, 1574, 1707 |
| BtsI | GCAGTG | 1 cut(s) | 2021 |
| BtsIMutI | CAGTG | 3 cut(s) | 614, 1828, 2021 |
| Cac8I | GCNNGC | 3 cut(s) | 177, 1017, 1481 |
| Cfr13I | GGNCC | 1 cut(s) | 74 |
| CseI | GACGC | 1 cut(s) | 92 |
| Csp6I | GTAC | 1 cut(s) | 1173 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1997, 2032 |
| CviQI | GTAC | 1 cut(s) | 1173 |
| DraI | TTTAAA | 2 cut(s) | 292, 1809 |
| Eam1104I | CTCTTC | 1 cut(s) | 103 |
| EarI | CTCTTC | 1 cut(s) | 103 |
| EciI | GGCGGA | 1 cut(s) | 96 |
| Eco31I | GGTCTC | 1 cut(s) | 1228 |
| Eco47I | GGWCC | 1 cut(s) | 74 |
| Eco57I | CTGAAG | 6 cut(s) | 1109, 1233, 1445, 1760, 1910, 1937 |
| Eco88I | CYCGRG | 1 cut(s) | 569 |
| EcoO109I | RGGNCCY | 1 cut(s) | 74 |
| EcoRII | CCWGG | 1 cut(s) | 408 |
| FaqI | GGGAC | 1 cut(s) | 34 |
| FbaI | TGATCA | 3 cut(s) | 367, 1033, 1690 |
| FblI | GTMKAC | 1 cut(s) | 116 |
| Fnu4HI | GCNGC | 5 cut(s) | 414, 894, 1448, 1587, 2061 |
| FokI | GGATG | 4 cut(s) | 224, 761, 1561, 1694 |
| Fsp4HI | GCNGC | 5 cut(s) | 414, 894, 1448, 1587, 2061 |
| FspBI | CTAG | 8 cut(s) | 11, 512, 671, 935, 1346, 1496, 1596, 1649 |
| GluI | GCNGC | 5 cut(s) | 414, 894, 1448, 1587, 2061 |
| GsuI | CTGGAG | 2 cut(s) | 575, 1757 |
| HapII | CCGG | 2 cut(s) | 110, 1711 |
| HgaI | GACGC | 1 cut(s) | 92 |
| HincII | GTYRAC | 2 cut(s) | 117, 1747 |
| HindII | GTYRAC | 2 cut(s) | 117, 1747 |
| HindIII | AAGCTT | 5 cut(s) | 31, 130, 177, 1013, 1949 |
| HpaI | GTTAAC | 1 cut(s) | 1747 |
| HpaII | CCGG | 2 cut(s) | 110, 1711 |
| HphI | GGTGA | 3 cut(s) | 82, 142, 1445 |
| Hpy166II | GTNNAC | 5 cut(s) | 117, 1421, 1643, 1747, 1826 |
| Hpy8I | GTNNAC | 5 cut(s) | 117, 1421, 1643, 1747, 1826 |
| Hpy99I | CGWCG | 1 cut(s) | 127 |
| HpyAV | CCTTC | 8 cut(s) | 97, 163, 298, 319, 434, 866, 1420, 1424 |
| HpyCH4III | ACNGT | 5 cut(s) | 609, 1029, 1049, 1656, 1823 |
| HpyCH4IV | ACGT | 1 cut(s) | 760 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 30, 902, 1016 |
| HpySE526I | ACGT | 1 cut(s) | 760 |
| Kpn2I | TCCGGA | 1 cut(s) | 1710 |
| Ksp22I | TGATCA | 3 cut(s) | 367, 1033, 1690 |
| KspAI | GTTAAC | 1 cut(s) | 1747 |
| LmnI | GCTCC | 5 cut(s) | 172, 232, 550, 1507, 2047 |
| Lsp1109I | GCAGC | 5 cut(s) | 400, 880, 1459, 1573, 2072 |
| LweI | GCATC | 3 cut(s) | 733, 1066, 1583 |
| MaeI | CTAG | 8 cut(s) | 11, 512, 671, 935, 1346, 1496, 1596, 1649 |
| MaeII | ACGT | 1 cut(s) | 760 |
| MfeI | CAATTG | 2 cut(s) | 1085, 2009 |
| MflI | RGATCY | 4 cut(s) | 193, 1000, 1839, 1966 |
| MhlI | GDGCHC | 1 cut(s) | 237 |
| MlyI | GAGTC | 7 cut(s) | 122, 344, 440, 524, 561, 590, 1148 |
| MmeI | TCCRAC | 3 cut(s) | 564, 1179, 1867 |
| MroI | TCCGGA | 1 cut(s) | 1710 |
| MroXI | GAANNNNTTC | 2 cut(s) | 86, 269 |
| MslI | CAYNNNNRTG | 2 cut(s) | 240, 1935 |
| MspI | CCGG | 2 cut(s) | 110, 1711 |
| MspR9I | CCNGG | 1 cut(s) | 410 |
| MunI | CAATTG | 2 cut(s) | 1085, 2009 |
| MvaI | CCWGG | 1 cut(s) | 410 |
| MvnI | CGCG | 1 cut(s) | 103 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 30, 902, 1016 |
| NmeAIII | GCCGAG | 1 cut(s) | 431 |
| NspI | RCATGY | 1 cut(s) | 1454 |
| OliI | CACNNNNGTG | 1 cut(s) | 240 |
| PaeR7I | CTCGAG | 1 cut(s) | 569 |
| PdmI | GAANNNNTTC | 2 cut(s) | 86, 269 |
| PfeI | GAWTC | 6 cut(s) | 538, 641, 1277, 1543, 1567, 2075 |
| PflFI | GACNNNGTC | 1 cut(s) | 121 |
| PkrI | GCNGC | 5 cut(s) | 415, 895, 1449, 1588, 2062 |
| PleI | GAGTC | 7 cut(s) | 121, 343, 439, 523, 561, 589, 1147 |
| PpsI | GAGTC | 7 cut(s) | 121, 343, 439, 523, 561, 589, 1147 |
| PpuMI | RGGWCCY | 1 cut(s) | 74 |
| PshBI | ATTAAT | 1 cut(s) | 1701 |
| Psp5II | RGGWCCY | 1 cut(s) | 74 |
| Psp6I | CCWGG | 1 cut(s) | 408 |
| PspGI | CCWGG | 1 cut(s) | 408 |
| PspPI | GGNCC | 1 cut(s) | 74 |
| PspPPI | RGGWCCY | 1 cut(s) | 74 |
| PsuI | RGATCY | 4 cut(s) | 193, 1000, 1839, 1966 |
| PsyI | GACNNNGTC | 1 cut(s) | 121 |
| RsaI | GTAC | 1 cut(s) | 1174 |
| RsaNI | GTAC | 1 cut(s) | 1173 |
| RseI | CAYNNNNRTG | 2 cut(s) | 240, 1935 |
| SalI | GTCGAC | 1 cut(s) | 115 |
| SatI | GCNGC | 5 cut(s) | 414, 894, 1448, 1587, 2061 |
| Sau96I | GGNCC | 1 cut(s) | 74 |
| SchI | GAGTC | 7 cut(s) | 122, 344, 440, 524, 561, 590, 1148 |
| ScrFI | CCNGG | 1 cut(s) | 410 |
| SduI | GDGCHC | 1 cut(s) | 237 |
| SfaNI | GCATC | 3 cut(s) | 733, 1066, 1583 |
| SfcI | CTRYAG | 1 cut(s) | 690 |
| Sfr274I | CTCGAG | 1 cut(s) | 569 |
| SinI | GGWCC | 1 cut(s) | 74 |
| SlaI | CTCGAG | 1 cut(s) | 569 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 240, 1935 |
| SmlI | CTYRAG | 4 cut(s) | 569, 728, 854, 1634 |
| SmoI | CTYRAG | 4 cut(s) | 569, 728, 854, 1634 |
| SsiI | CCGC | 3 cut(s) | 107, 153, 719 |
| SspMI | CTAG | 8 cut(s) | 11, 512, 671, 935, 1346, 1496, 1596, 1649 |
| StyD4I | CCNGG | 1 cut(s) | 408 |
| TaaI | ACNGT | 5 cut(s) | 609, 1029, 1049, 1656, 1823 |
| TaiI | ACGT | 1 cut(s) | 763 |
| TaqI | TCGA | 4 cut(s) | 116, 135, 570, 945 |
| TatI | WGTACW | 1 cut(s) | 1172 |
| TfiI | GAWTC | 6 cut(s) | 538, 641, 1277, 1543, 1567, 2075 |
| TscAI | CASTG | 3 cut(s) | 614, 1828, 2021 |
| TseI | GCWGC | 5 cut(s) | 413, 893, 1447, 1586, 2060 |
| TspGWI | ACGGA | 1 cut(s) | 230 |
| TspRI | CASTG | 3 cut(s) | 614, 1828, 2021 |
| Tth111I | GACNNNGTC | 1 cut(s) | 121 |
| VpaK11BI | GGWCC | 1 cut(s) | 74 |
| VspI | ATTAAT | 1 cut(s) | 1701 |
| XapI | RAATTY | 3 cut(s) | 922, 1131, 1804 |
| XbaI | TCTAGA | 1 cut(s) | 934 |
| XceI | RCATGY | 1 cut(s) | 1454 |
| XhoI | CTCGAG | 1 cut(s) | 569 |
| XmiI | GTMKAC | 1 cut(s) | 116 |
| XmnI | GAANNNNTTC | 2 cut(s) | 86, 269 |
| XspI | CTAG | 8 cut(s) | 11, 512, 671, 935, 1346, 1496, 1596, 1649 |