RLG00000000697

Synaptonemal complex protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
4012532 .. 4014317
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000697

Sequence Viewer

Length: 459 bp
ATGGCGAAGAAATTAATGGAGCACATCCGTGCATTAAAGGAAAAAATTCAAGAGAAGAGGAAACTTACAAGGAATCGTGAAAAGGAGCTGGAGGAATACAGACTCGAGAAAGAGGAACATCACAGAAATGCAAGTGTCATAGACGAAAAAGATAAGGCTAATCAAATCAAGCCTAAATTGAAAGCTAAGGCTCTCACTGTCAGCTCCTATTTGGTCAGTAGCGTTCAGCAGAAGCATGATAAAAAGGAACGATGTCTAAAAGCTGAACACAGTGAAGAGCTAAAGCAGATCCAACTTCAAGCTGAAAATGAGTTGAGAGAGAAAATTACATCAATGAGGAATGAACATGAAACCCGACTGAGAGCTTTGGGACTTCAGCATGAAGATGAGATTAAGAAGCTTCAGAAGGACTTGGATCTTCAAAAGTCCAAAGTACTTATCTTCCTATGTTCTTTCTGA

Protein Analysis

153

Amino Acids

18.15

Weight (kDa)

9.41

Isoelectric Point (pI)

34.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 283, 423
AcsI RAATTY 1 cut(s) 45
AcuI CTGAAG 2 cut(s) 359, 386
AfaI GTAC 1 cut(s) 435
AgsI TTSAA 4 cut(s) 50, 181, 299, 422
AleI CACNNNNGTG 1 cut(s) 27
AluBI AGCT 8 cut(s) 88, 185, 204, 263, 280, 302, 365, 400
AluI AGCT 8 cut(s) 88, 185, 204, 263, 280, 302, 365, 400
Alw21I GWGCWC 1 cut(s) 24
AlwI GGATC 2 cut(s) 283, 423
Ama87I CYCGRG 1 cut(s) 104
ApoI RAATTY 1 cut(s) 45
AseI ATTAAT 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 24
BmcAI AGTACT 1 cut(s) 435
BmeT110I CYCGRG 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 186
BseGI GGATG 1 cut(s) 24
BseMII CTCAG 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 104
BslFI GGGAC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 384
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 24
Bsp143I GATC 2 cut(s) 288, 415
BspCNI CTCAG 1 cut(s) 351
BspPI GGATC 2 cut(s) 283, 423
BspQI GCTCTTC 1 cut(s) 270
BssMI GATC 2 cut(s) 288, 415
Bst4CI ACNGT 2 cut(s) 199, 272
Bst6I CTCTTC 2 cut(s) 50, 270
BstDEI CTNAG 2 cut(s) 186, 359
BstF5I GGATG 1 cut(s) 24
BstKTI GATC 2 cut(s) 291, 418
BstMBI GATC 2 cut(s) 288, 415
BstX2I RGATCY 2 cut(s) 288, 415
BstYI RGATCY 2 cut(s) 288, 415
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 195, 277
Csp6I GTAC 1 cut(s) 434
CviAII CATG 3 cut(s) 236, 347, 380
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 2 cut(s) 186, 359
DpnI GATC 2 cut(s) 290, 417
DpnII GATC 2 cut(s) 288, 415
Eam1104I CTCTTC 2 cut(s) 50, 270
EarI CTCTTC 2 cut(s) 50, 270
Eco57I CTGAAG 2 cut(s) 359, 386
Eco88I CYCGRG 1 cut(s) 104
FaeI CATG 3 cut(s) 239, 350, 383
FaiI YATR 5 cut(s) 140, 237, 348, 381, 448
FaqI GGGAC 1 cut(s) 384
FatI CATG 3 cut(s) 235, 346, 379
FokI GGATG 1 cut(s) 11
GsuI CTGGAG 1 cut(s) 110
Hin1II CATG 3 cut(s) 239, 350, 383
HindIII AAGCTT 1 cut(s) 398
HinfI GANTC 2 cut(s) 73, 102
Hpy188I TCNGA 2 cut(s) 405, 458
Hpy188III TCNNGA 3 cut(s) 50, 77, 106
HpyAV CCTTC 1 cut(s) 400
HpyCH4III ACNGT 2 cut(s) 199, 272
HpyCH4V TGCA 2 cut(s) 32, 131
HpyF3I CTNAG 2 cut(s) 186, 359
Hsp92II CATG 3 cut(s) 239, 350, 383
Kzo9I GATC 2 cut(s) 288, 415
LguI GCTCTTC 1 cut(s) 270
LmnI GCTCC 3 cut(s) 19, 85, 209
LpnPI CCDG 1 cut(s) 74
MalI GATC 2 cut(s) 290, 417
MboI GATC 2 cut(s) 288, 415
MboII GAAGA 6 cut(s) 19, 67, 287, 395, 410, 433
MflI RGATCY 2 cut(s) 288, 415
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 4 cut(s) 11, 45, 176, 324
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 4 cut(s) 51, 85, 106, 330
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 3 cut(s) 14, 35, 393
MslI CAYNNNNRTG 3 cut(s) 27, 126, 384
NdeII GATC 2 cut(s) 288, 415
NlaIII CATG 3 cut(s) 239, 350, 383
OliI CACNNNNGTG 1 cut(s) 27
PaeR7I CTCGAG 1 cut(s) 104
PciSI GCTCTTC 1 cut(s) 270
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 73
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
PshBI ATTAAT 1 cut(s) 14
PsuI RGATCY 2 cut(s) 288, 415
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
RseI CAYNNNNRTG 3 cut(s) 27, 126, 384
SapI GCTCTTC 1 cut(s) 270
SaqAI TTAA 3 cut(s) 14, 35, 393
Sau3AI GATC 2 cut(s) 288, 415
ScaI AGTACT 1 cut(s) 435
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 24
SetI ASST 8 cut(s) 90, 187, 206, 265, 282, 304, 367, 402
Sfr274I CTCGAG 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 3 cut(s) 27, 126, 384
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 4 cut(s) 11, 45, 176, 324
TaaI ACNGT 2 cut(s) 199, 272
TaqI TCGA 1 cut(s) 105
TasI AATT 4 cut(s) 11, 45, 176, 324
TatI WGTACW 1 cut(s) 433
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 3 cut(s) 14, 35, 393
Tru9I TTAA 3 cut(s) 14, 35, 393
TscAI CASTG 2 cut(s) 202, 277
TspDTI ATGAA 3 cut(s) 357, 363, 396
TspGWI ACGGA 1 cut(s) 17
TspRI CASTG 2 cut(s) 202, 277
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 1 cut(s) 45
XhoI CTCGAG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.