Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACGGCAGTCATATGTCTTTTCCTTGCAGATGCTATGATTAAGAACTTTGAAGAAACTCTAGCAACTAATAGGTTGGCTACAGAGAGTCTGAACACTAAATTGGGTGAGGTGCATCTTGAGTTAAAGTTGAAAGAGGACGAAATCAGACGTTTGATAACTGGTCAGGAGAACTTGGAAACAGAAAAGTATGATCTTCATATGAGCAACAATGACCTTGTTAAGAGATTAGATATGTCAGTCCTTGAGATAAAGAATCTTGAAGGTTTTGTTCATGTGTTGGCTGCACATTTGGCTGAATTGGACAGAGTTAGTTTGAACTTTCTAGAAAAGTTTGATAAGCTAAACTCTGTCTACGAGGCTTGCTTCCGGTTGGTCAATCAGGAGAGAGACCTTTCTGCCAAGCTTGCTAAGAGACAGTATGATCAACTGCACGGCAGGTTCTTGAACTTGACATCAGAAAAGATGCTATACAATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

18.66

Weight (kDa)

5.58

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	53, 133, 263, 319, 448
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
AluBI	AGCT	2 cut(s)	343, 406
AluI	AGCT	2 cut(s)	343, 406
Alw26I	GTCTC	2 cut(s)	384, 409
ApeKI	GCWGC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	271
BceAI	ACGGC	2 cut(s)	21, 451
BclI	TGATCA	1 cut(s)	424
BcoDI	GTCTC	2 cut(s)	384, 409
BfaI	CTAG	2 cut(s)	62, 326
BfmI	CTRYAG	1 cut(s)	81
BfuAI	ACCTGC	1 cut(s)	429
BisI	GCNGC	1 cut(s)	285
BlsI	GCNGC	1 cut(s)	286
BmsI	GCATC	3 cut(s)	22, 124, 456
BoxI	GACNNNNGTC	1 cut(s)	8
BpuEI	CTTGAG	2 cut(s)	140, 266
BsaI	GGTCTC	1 cut(s)	384
BsaWI	WCCGGW	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	2 cut(s)	270, 416
BsiSI	CCGG	1 cut(s)	370
BsmAI	GTCTC	2 cut(s)	384, 409
Bso31I	GGTCTC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	193, 424
BspMI	ACCTGC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	2 cut(s)	193, 424
Bst4CI	ACNGT	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	364, 408
BstDEI	CTNAG	1 cut(s)	411
BstKTI	GATC	2 cut(s)	196, 427
BstMAI	GTCTC	2 cut(s)	384, 409
BstMBI	GATC	2 cut(s)	193, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 407
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	364, 408
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	6 cut(s)	80, 284, 296, 343, 362, 406
CviKI_1	RGCY	6 cut(s)	80, 284, 296, 343, 362, 406
DdeI	CTNAG	1 cut(s)	411
DpnI	GATC	2 cut(s)	195, 426
DpnII	GATC	2 cut(s)	193, 424
Eco31I	GGTCTC	1 cut(s)	384
FaeI	CATG	1 cut(s)	278
FatI	CATG	1 cut(s)	274
FauNDI	CATATG	2 cut(s)	14, 201
FbaI	TGATCA	1 cut(s)	424
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	1 cut(s)	285
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	2 cut(s)	62, 326
GluI	GCNGC	1 cut(s)	285
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	2 cut(s)	88, 256
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	93, 149, 460
Hpy188III	TCNNGA	6 cut(s)	119, 167, 260, 326, 383, 445
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	29, 115, 287, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 407
HpyF3I	CTNAG	1 cut(s)	411
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	1 cut(s)	278
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	193, 424
LpnPI	CCDG	5 cut(s)	147, 152, 368, 383, 424
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	3 cut(s)	22, 124, 456
MaeI	CTAG	2 cut(s)	62, 326
MaeII	ACGT	1 cut(s)	151
MalI	GATC	2 cut(s)	195, 426
MboI	GATC	2 cut(s)	193, 424
MboII	GAAGA	2 cut(s)	65, 188
MfeI	CAATTG	1 cut(s)	475
MluCI	AATT	3 cut(s)	101, 299, 475
MlyI	GAGTC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	103, 130, 352
MseI	TTAA	3 cut(s)	42, 125, 222
MspI	CCGG	1 cut(s)	370
MunI	CAATTG	1 cut(s)	475
MwoI	GCNNNNNNNGC	2 cut(s)	293, 407
NdeI	CATATG	2 cut(s)	14, 201
NdeII	GATC	2 cut(s)	193, 424
NlaIII	CATG	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	286
PleI	GAGTC	1 cut(s)	96
PpsI	GAGTC	1 cut(s)	96
PshAI	GACNNNNGTC	1 cut(s)	8
SaqAI	TTAA	3 cut(s)	42, 125, 222
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	2 cut(s)	193, 424
SchI	GAGTC	1 cut(s)	97
SetI	ASST	9 cut(s)	77, 114, 154, 219, 268, 345, 396, 408, 443
SfaNI	GCATC	3 cut(s)	22, 124, 456
SfcI	CTRYAG	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	119, 245
SmoI	CTYRAG	2 cut(s)	119, 245
Sse9I	AATT	3 cut(s)	101, 299, 475
SspMI	CTAG	2 cut(s)	62, 326
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	154
TasI	AATT	3 cut(s)	101, 299, 475
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	42, 125, 222
Tru9I	TTAA	3 cut(s)	42, 125, 222
TseI	GCWGC	1 cut(s)	284
TspDTI	ATGAA	2 cut(s)	188, 263
XbaI	TCTAGA	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	354
XspI	CTAG	2 cut(s)	62, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.