Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001157.1

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Reverse (-)

39455 .. 40168

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001157.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgtttcatatgagcaacaacgaccttgttaagagattagatatgtcagtccttgagataaagaatcttgaaggttttgttcatgtgttggctgcacatttggctgaattggacagacagagtttgaactttctagaaaagtttgataagctaaactcgctctacgaggcttgcttccagttggtcaatcaggagagagtcctttctgccaagcttgctaagagacagtatgatcaactgcacgacaggttcttgaacttgacatcagaaaaagatgctatacaattggtaaatcaggagttgaacaataaggtcatggaacttcagaaagttcaggagtctattatggcacaactttcagaggaatgccgtatagccagggagaggatacagaagttggagtttgaagctgaagctctggtctcaaagaagattgaaacagagaagttggtgtctgaattagaactgcaaattgattctctgtcagaaagttcaagatcatctgagaataaaaggcaaattctgttgctgaaaatctcagcactagaaactgagaataaagataatacagagaaactacaagcagagatacagaagaaagcggggagaaacataagcaacgttgcctattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

24.34

Weight (kDa)

5.56

Isoelectric Point (pI)

56.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	602
AclI	AACGTT	1 cut(s)	621
AcsI	RAATTY	1 cut(s)	519
AcuI	CTGAAG	2 cut(s)	308, 432
AfiI	CCNNNNNNNGG	1 cut(s)	384
AgsI	TTSAA	7 cut(s)	71, 127, 256, 304, 407, 437, 495
AjnI	CCWGG	1 cut(s)	377
AluBI	AGCT	4 cut(s)	151, 214, 410, 416
AluI	AGCT	4 cut(s)	151, 214, 410, 416
Alw26I	GTCTC	2 cut(s)	217, 427
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	1 cut(s)	519
BaeI	ACNNNNGTAYC	2 cut(s)	380, 413
BbvI	GCAGC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	379
BciVI	GTATCC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	2 cut(s)	217, 427
BfaI	CTAG	2 cut(s)	134, 545
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	379
BmrFI	CCNGG	1 cut(s)	379
BmsI	GCATC	1 cut(s)	265
BpuEI	CTTGAG	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	427
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	495, 543, 552
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	1 cut(s)	79
BsgI	GTGCAG	2 cut(s)	78, 224
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	2 cut(s)	217, 427
BsmI	GAATGC	1 cut(s)	371
Bso31I	GGTCTC	1 cut(s)	427
Bsp143I	GATC	2 cut(s)	232, 497
BspACI	CCGC	1 cut(s)	602
BspCNI	CTCAG	3 cut(s)	496, 544, 551
BspTNI	GGTCTC	1 cut(s)	427
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	232, 497
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	172, 216
BstDEI	CTNAG	4 cut(s)	219, 504, 538, 552
BstKTI	GATC	2 cut(s)	235, 500
BstMAI	GTCTC	2 cut(s)	217, 427
BstMBI	GATC	2 cut(s)	232, 497
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 157, 215
BstNI	CCWGG	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	377
BstV1I	GCAGC	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	172, 216
CviAII	CATG	2 cut(s)	83, 316
CviJI	RGCY	8 cut(s)	92, 104, 151, 170, 214, 377, 410, 416
CviKI_1	RGCY	8 cut(s)	92, 104, 151, 170, 214, 377, 410, 416
DdeI	CTNAG	4 cut(s)	219, 504, 538, 552
DpnI	GATC	2 cut(s)	234, 499
DpnII	GATC	2 cut(s)	232, 497
Eco31I	GGTCTC	1 cut(s)	427
Eco57I	CTGAAG	2 cut(s)	308, 432
EcoRII	CCWGG	1 cut(s)	377
FaeI	CATG	2 cut(s)	86, 319
FatI	CATG	2 cut(s)	82, 315
FauI	CCCGC	1 cut(s)	595
FauNDI	CATATG	1 cut(s)	9
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	2 cut(s)	134, 545
GluI	GCNGC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	86, 319
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	4 cut(s)	64, 198, 338, 476
Hpy188I	TCNGA	6 cut(s)	268, 327, 361, 457, 487, 505
Hpy188III	TCNNGA	7 cut(s)	68, 134, 191, 253, 296, 335, 495
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	3 cut(s)	95, 241, 469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 157, 215
HpyF3I	CTNAG	4 cut(s)	219, 504, 538, 552
HpySE526I	ACGT	1 cut(s)	621
Hsp92II	CATG	2 cut(s)	86, 319
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	232, 497
LpnPI	CCDG	8 cut(s)	176, 191, 232, 281, 320, 364, 391, 404
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	2 cut(s)	134, 545
MaeII	ACGT	1 cut(s)	621
MalI	GATC	2 cut(s)	234, 499
MboI	GATC	2 cut(s)	232, 497
MboII	GAAGA	2 cut(s)	442, 607
MfeI	CAATTG	1 cut(s)	284
MluCI	AATT	5 cut(s)	107, 284, 458, 471, 519
MlyI	GAGTC	2 cut(s)	207, 347
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	160, 355, 378
MseI	TTAA	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	3 cut(s)	101, 157, 215
NdeI	CATATG	1 cut(s)	9
NdeII	GATC	2 cut(s)	232, 497
NlaIII	CATG	2 cut(s)	86, 319
PctI	GAATGC	1 cut(s)	371
PfeI	GAWTC	2 cut(s)	64, 476
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	2 cut(s)	206, 346
PpsI	GAGTC	2 cut(s)	206, 346
Psp1406I	AACGTT	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	232, 497
SchI	GAGTC	2 cut(s)	207, 347
ScrFI	CCNGG	1 cut(s)	379
SetI	ASST	9 cut(s)	27, 76, 153, 216, 251, 315, 412, 418, 624
SfaNI	GCATC	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	5 cut(s)	107, 284, 458, 471, 519
SsiI	CCGC	1 cut(s)	602
SspMI	CTAG	2 cut(s)	134, 545
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	624
TasI	AATT	5 cut(s)	107, 284, 458, 471, 519
TfiI	GAWTC	2 cut(s)	64, 476
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	71
XapI	RAATTY	1 cut(s)	519
XbaI	TCTAGA	1 cut(s)	133
XspI	CTAG	2 cut(s)	134, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.