Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000742

Physical Location & Seq

Genomic Coordinates Forward (+)

74217448 .. 74218361

Gene Structure 914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G046820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTGGTCGAAAATTAATTGCTGCTTTCCAATTGATTTTGGTTTTGATTTATATATACAGTGCTCTATAGACATTTCTGTGACGTTTGTATGCCTTTCTGCAGCCAAGTATGTATTGAAGGAGGTTAAGGCTATAATCACATATTCATTGACGGGGAGTTATAAAATATCTTGCTACGTCCAGGATTCACCTCTAGTAGGAGCATCACAAACACCAGTGTCAACACTATTGAAGAAAGCTTCGGAGAATATGAATTCTCCAAATGTAATGAATATTTCAAAGCACCAAAAAAAGGTCATTTTTGATGAATATGAAGTTGAAACTGGTAATGGAAGAACTATTAAACTGAAAGCAAGAAGCACAGACATGTTTGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000793 GO:0000794 GO:0000795 GO:0000802 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031974 GO:0031981 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0099086 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.13

Weight (kDa)

8.25

Isoelectric Point (pI)

27.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22260 AT1G22260 AT1G22260 AT1G22275 AT1G22275 AT1G22275
fragaria_vesca	FvH4_5g32650 FvH4_5g32780 FvH4_5g37341 FvH4_5g37341 FvH4_5g37341 FvH4_5g37878 FvH4_5g39260 FvH4_5g39261 FvH4_6g40021
malus_domestica	MD15G1368600.v1.1
prunus_persica	Prupe.1G516800_v2.0.a1
pyrus_communis	pycom15g33040
rosa_chinensis	RchiOBHm_Chr0c28g0500891 RchiOBHm_Chr0c28g0500941 RchiOBHm_Chr0c28g0500951 RchiOBHm_Chr0c28g0501001 RchiOBHm_Chr0c28g0501031 RchiOBHm_Chr0c28g0501041 RchiOBHm_Chr2g0168611 RchiOBHm_Chr7g0227211 RchiOBHm_Chr7g0239001 RchiOBHm_Chr7g0240441 RchiOBHm_Chr7g0243501 RchiOBHm_Chr7g0243551 RchiOBHm_Chr7g0243591 RchiOBHm_Chr7g0243601 RchiOBHm_Chr7g0243631
rosa_laevigata	RLG00000000697 RLG00000000791 RLG00000001655 RLG00000012649 RLG00000029503 RLG00000029517
rosa_multiflora	Rmu_sc0000477.1_g000005 Rmu_sc0000808.1_g000048 Rmu_sc0001157.1_g000007 Rmu_sc0003467.1_g000028 Rmu_sc0004062.1_g000005 Rmu_sc0004062.1_g000012 Rmu_sc0004132.1_g000002 Rmu_sc0007030.1_g000007 Rmu_sc0007424.1_g000006
rosa_roxburghii	Rroxscaffold_3G00220080 Rroxscaffold_3G00221390 Rroxscaffold_3G00222050 Rroxscaffold_3G00222080
rosa_rugosa	Rorug04G0112400 Rorug04G0112500 Rorug04G0112500 Rorug05G0574800 Rorug07G0324400 Rorug07G0324800
rosa_samantha	Rh2CG397000 Rh5BG532300 Rh5BG532500 Rh5CG411900 Rh5CG556200 Rh7BG420900 Rh7BG452000 Rh7CG496600 Rh7CG496800 Rh7DG464100
rosa_wichuraiana	Rw2G046820 Rw5G047300 Rw7G039610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	253
AfiI	CCNNNNNNNGG	2 cut(s)	197, 292
AflIII	ACRYGT	1 cut(s)	366
AgsI	TTSAA	4 cut(s)	118, 232, 279, 320
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw21I	GWGCWC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	21, 101
ApoI	RAATTY	1 cut(s)	253
AseI	ATTAAT	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	8, 113
BciT130I	CCWGG	1 cut(s)	182
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	2 cut(s)	66, 99
BisI	GCNGC	2 cut(s)	22, 102
BlsI	GCNGC	2 cut(s)	23, 103
Bme1390I	CCNGG	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	212
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 292
Bse1I	ACTGG	2 cut(s)	215, 328
BseBI	CCWGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	2 cut(s)	197, 292
BseNI	ACTGG	2 cut(s)	215, 328
BseXI	GCAGC	2 cut(s)	8, 113
BsiHKAI	GWGCWC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	197, 292
Bsp1286I	GDGCHC	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	215, 328
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	2 cut(s)	66, 99
BstV1I	GCAGC	2 cut(s)	8, 113
BtsIMutI	CAGTG	2 cut(s)	65, 222
CviAII	CATG	1 cut(s)	367
CviJI	RGCY	3 cut(s)	104, 131, 239
CviKI_1	RGCY	3 cut(s)	104, 131, 239
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	370
FatI	CATG	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	22, 102
Fsp4HI	GCNGC	2 cut(s)	22, 102
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	2 cut(s)	22, 102
Hin1II	CATG	1 cut(s)	370
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	244
Hpy8I	GTNNAC	1 cut(s)	222
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4IV	ACGT	2 cut(s)	83, 177
HpyCH4V	TGCA	1 cut(s)	101
HpySE526I	ACGT	2 cut(s)	83, 177
Hsp92II	CATG	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	200
LpnPI	CCDG	4 cut(s)	167, 194, 228, 309
Lsp1109I	GCAGC	2 cut(s)	8, 113
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	2 cut(s)	83, 177
MaeIII	GTNAC	1 cut(s)	79
MboII	GAAGA	2 cut(s)	244, 345
MfeI	CAATTG	1 cut(s)	30
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	4 cut(s)	12, 16, 30, 253
MnlI	CCTC	3 cut(s)	115, 201, 367
MseI	TTAA	3 cut(s)	15, 126, 342
MslI	CAYNNNNRTG	2 cut(s)	77, 365
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	182
NlaIII	CATG	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	370
PciI	ACATGT	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	185
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	23, 103
PscI	ACATGT	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	103
RseI	CAYNNNNRTG	2 cut(s)	77, 365
SaqAI	TTAA	3 cut(s)	15, 126, 342
SatI	GCNGC	2 cut(s)	22, 102
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	7 cut(s)	86, 126, 180, 193, 241, 297, 378
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	2 cut(s)	66, 99
SgeI	CNNG	9 cut(s)	118, 165, 183, 193, 194, 206, 227, 336, 366
SmiMI	CAYNNNNRTG	2 cut(s)	77, 365
Sse9I	AATT	4 cut(s)	12, 16, 30, 253
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	60
TaiI	ACGT	2 cut(s)	86, 180
TaqI	TCGA	1 cut(s)	8
TasI	AATT	4 cut(s)	12, 16, 30, 253
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	15, 126, 342
Tru9I	TTAA	3 cut(s)	15, 126, 342
TscAI	CASTG	2 cut(s)	65, 222
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	21, 101
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	5 cut(s)	135, 266, 284, 321, 327
TspRI	CASTG	2 cut(s)	65, 222
VspI	ATTAAT	1 cut(s)	15
XagI	CCTNNNNNAGG	1 cut(s)	195
XapI	RAATTY	1 cut(s)	253
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.