Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

11956112 .. 11958670

Gene Structure 2559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18140.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCAGACCCAAAACCCAGACTAGTCTGCTGCATCGGCGACATCCACGGCTTCCACACCAAGCTCCAAAACCTCTGGTCCAATCTCGAATCCTCCACCCCTTCTTCCGACTTCGCCACCGCCCTCATCATCTTCCTCGGCGACTACTGCGACCGCGGCCCCGAAACCAACAAAGTCCTCGACTTCCTCATCTCCCTCCCCTCCCGATACCCACGTCAGAAACACGTCTTCATCGCCGGAAACCACGACTTCGCCTTCGCCGCATTTCTCGGAGTCGTGCCTCCGCCGCTGGACGGGTCGGAGTTCCGCGAGGGGTGGAGGGAGTTCGAGGACAATGAGGAGAGAGAAGGGTGGTTTAAGGGCGAAGGGTATGAAGGGATGCATTTGCAGGGGAGGAGATGGGCGGGGAGGATGACGGGGTTTAATAAGGCCAAGGGGACTGAGTATCAGGGTTCTATTTATGATGCCGGGCCCACATTCGAGTCCTACGGGGTGCCTCATGGCTCTGCTGATTTGGTGAAGGCAGTTCCTGATGATCATAAGAAGTTTCTTGCCAATGTGGTCTGGGTGCATGAAGAGGATGATGTCTGTGTAGAGATTGAGGGTGAAACCAAATACTATAAATTGATAGCTGTTCATGCTGGTTTGGAGAAAGATAAAGATGTCAAACAACAGTTGGAGTTTCTGAAAGCCAGAGATACTCGGATACCTAAGATAGCGGCTCTGAGTGGCAGGAAAGACGTGTGGAATATACCAGAGGAACTGAAAAACACTCCAACTGTTATTGTAAGTGGTCATCATGGGAAACTTCACATTGAAGGCCTAAGGCTGATTATTGATGAAGGCGGTGGTTTTGCAAAGAACCCTGTGGCTGCAATTTTGCTCCCCTCGATGAAGATAGTCCGTGATACAGATGTTTTGGCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

310

Amino Acids

34.57

Weight (kDa)

5.76

Isoelectric Point (pI)

39.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	9 - 110	3.2e-13	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	493
AccII	CGCG	2 cut(s)	156, 309
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	2 cut(s)	223, 741
AgsI	TTSAA	1 cut(s)	818
AhlI	ACTAGT	1 cut(s)	22
AjiI	CACGTC	3 cut(s)	215, 226, 742
AluBI	AGCT	2 cut(s)	64, 632
AluI	AGCT	2 cut(s)	64, 632
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	4 cut(s)	157, 429, 470, 820
ApaI	GGGCCC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	30, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	4 cut(s)	78, 158, 470, 471
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	529, 617
AvaII	GGWCC	1 cut(s)	78
AxyI	CCTNAGG	1 cut(s)	824
BaeGI	GKGCMC	1 cut(s)	474
BaeI	ACNNNNGTAYC	3 cut(s)	199, 232, 900
BanI	GGYRCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	220
BbvI	GCAGC	2 cut(s)	17, 859
BccI	CCATC	1 cut(s)	393
BceAI	ACGGC	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	699
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	1 cut(s)	469
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	2 cut(s)	23, 928
BfuI	GTATCC	1 cut(s)	699
BisI	GCNGC	6 cut(s)	31, 157, 261, 287, 720, 873
BlsI	GCNGC	6 cut(s)	32, 158, 262, 288, 721, 874
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	78
BmgBI	CACGTC	3 cut(s)	215, 226, 742
BmgT120I	GGNCC	4 cut(s)	78, 158, 470, 471
BmiI	GGNNCC	3 cut(s)	160, 472, 495
BmrFI	CCNGG	1 cut(s)	469
BmsI	GCATC	3 cut(s)	42, 369, 454
BpiI	GAAGAC	1 cut(s)	220
BpuMI	CCSGG	1 cut(s)	469
BsaJI	CCNNGG	4 cut(s)	46, 136, 154, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse21I	CCTNAGG	1 cut(s)	824
BseDI	CCNNGG	4 cut(s)	46, 136, 154, 432
BseGI	GGATG	4 cut(s)	42, 384, 417, 586
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMII	CTCAG	2 cut(s)	432, 716
BseRI	GAGGAG	2 cut(s)	353, 409
BseSI	GKGCMC	1 cut(s)	474
BseXI	GCAGC	2 cut(s)	17, 859
Bsh1236I	CGCG	2 cut(s)	156, 309
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	4 cut(s)	159, 431, 472, 822
BshNI	GGYRCC	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	237, 468
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	451
BsnI	GGCC	4 cut(s)	159, 431, 472, 822
Bsp120I	GGGCCC	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	535
BspANI	GGCC	4 cut(s)	159, 431, 472, 822
BspCNI	CTCAG	2 cut(s)	433, 717
BspFNI	CGCG	2 cut(s)	156, 309
BspLI	GGNNCC	3 cut(s)	160, 472, 495
BspT107I	GGYRCC	1 cut(s)	493
BssECI	CCNNGG	4 cut(s)	46, 136, 154, 432
BssMI	GATC	1 cut(s)	535
BssT1I	CCWWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	675, 781
Bst6I	CTCTTC	1 cut(s)	570
BstDEI	CTNAG	4 cut(s)	441, 711, 725, 824
BstDSI	CCRYGG	2 cut(s)	46, 154
BstF5I	GGATG	4 cut(s)	42, 384, 417, 586
BstFNI	CGCG	2 cut(s)	156, 309
BstKTI	GATC	1 cut(s)	538
BstMBI	GATC	1 cut(s)	535
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	6 cut(s)	36, 147, 156, 260, 286, 638
BstSCI	CCNGG	1 cut(s)	467
BstSLI	GKGCMC	1 cut(s)	474
BstUI	CGCG	2 cut(s)	156, 309
BstV1I	GCAGC	2 cut(s)	17, 859
BstV2I	GAAGAC	1 cut(s)	220
Bsu36I	CCTNAGG	1 cut(s)	824
BsuI	GTATCC	1 cut(s)	699
BsuRI	GGCC	4 cut(s)	159, 431, 472, 822
BtgI	CCRYGG	2 cut(s)	46, 154
BtgZI	GCGATG	1 cut(s)	217
BtrI	CACGTC	3 cut(s)	215, 226, 742
BtsCI	GGATG	4 cut(s)	42, 384, 417, 586
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr13I	GGNCC	4 cut(s)	78, 158, 470, 471
Cfr42I	CCGCGG	1 cut(s)	157
CviAII	CATG	4 cut(s)	500, 572, 638, 800
DdeI	CTNAG	4 cut(s)	441, 711, 725, 824
DpnI	GATC	1 cut(s)	537
DpnII	GATC	1 cut(s)	535
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	822
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	824
EcoT14I	CCWWGG	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	4 cut(s)	503, 575, 641, 803
FaiI	YATR	9 cut(s)	372, 462, 501, 540, 573, 621, 639, 752, 801
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	4 cut(s)	499, 571, 637, 799
FauI	CCCGC	1 cut(s)	397
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	6 cut(s)	31, 157, 261, 287, 720, 873
FokI	GGATG	4 cut(s)	29, 391, 424, 593
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	6 cut(s)	31, 157, 261, 287, 720, 873
FspBI	CTAG	2 cut(s)	23, 928
GluI	GCNGC	6 cut(s)	31, 157, 261, 287, 720, 873
HaeIII	GGCC	4 cut(s)	159, 431, 472, 822
HapII	CCGG	2 cut(s)	237, 468
Hin1II	CATG	4 cut(s)	503, 575, 641, 803
HinfI	GANTC	3 cut(s)	89, 273, 482
HpaII	CCGG	2 cut(s)	237, 468
HphI	GGTGA	2 cut(s)	529, 617
Hpy188I	TCNGA	8 cut(s)	7, 109, 219, 272, 301, 687, 705, 726
Hpy188III	TCNNGA	3 cut(s)	86, 204, 530
HpyAV	CCTTC	8 cut(s)	111, 265, 341, 359, 368, 514, 812, 836
HpyCH4III	ACNGT	2 cut(s)	675, 781
HpyCH4IV	ACGT	3 cut(s)	214, 225, 741
HpyCH4V	TGCA	6 cut(s)	33, 382, 388, 571, 857, 875
HpyF10VI	GCNNNNNNNGC	6 cut(s)	36, 147, 156, 260, 286, 638
HpyF3I	CTNAG	4 cut(s)	441, 711, 725, 824
HpySE526I	ACGT	3 cut(s)	214, 225, 741
Hsp92II	CATG	4 cut(s)	503, 575, 641, 803
Ksp22I	TGATCA	1 cut(s)	535
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	1 cut(s)	535
LmnI	GCTCC	2 cut(s)	69, 888
Lsp1109I	GCAGC	2 cut(s)	17, 859
LweI	GCATC	3 cut(s)	42, 369, 454
MaeI	CTAG	2 cut(s)	23, 928
MaeII	ACGT	3 cut(s)	214, 225, 741
MalI	GATC	1 cut(s)	537
MboI	GATC	1 cut(s)	535
MboII	GAAGA	5 cut(s)	96, 124, 220, 587, 907
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	2 cut(s)	623, 876
MlyI	GAGTC	2 cut(s)	282, 491
MmeI	TCCRAC	4 cut(s)	132, 279, 657, 800
Mph1103I	ATGCAT	1 cut(s)	384
MseI	TTAA	2 cut(s)	357, 423
MspA1I	CMGCKG	2 cut(s)	156, 289
MspI	CCGG	2 cut(s)	237, 468
MspR9I	CCNGG	1 cut(s)	469
MvnI	CGCG	2 cut(s)	156, 309
MwoI	GCNNNNNNNGC	6 cut(s)	36, 147, 156, 260, 286, 638
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	1 cut(s)	535
NlaIII	CATG	4 cut(s)	503, 575, 641, 803
NlaIV	GGNNCC	3 cut(s)	160, 472, 495
NmeAIII	GCCGAG	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	822
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	6 cut(s)	32, 158, 262, 288, 721, 874
PleI	GAGTC	2 cut(s)	281, 490
PpsI	GAGTC	2 cut(s)	281, 490
PspN4I	GGNNCC	3 cut(s)	160, 472, 495
PspOMI	GGGCCC	1 cut(s)	470
PspPI	GGNCC	4 cut(s)	78, 158, 470, 471
PstNI	CAGNNNCTG	1 cut(s)	530
SacII	CCGCGG	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	357, 423
SatI	GCNGC	6 cut(s)	31, 157, 261, 287, 720, 873
Sau3AI	GATC	1 cut(s)	535
Sau96I	GGNCC	4 cut(s)	78, 158, 470, 471
SchI	GAGTC	2 cut(s)	282, 491
ScrFI	CCNGG	1 cut(s)	469
SduI	GDGCHC	1 cut(s)	474
SetI	ASST	7 cut(s)	66, 75, 217, 228, 634, 712, 744
SfaNI	GCATC	3 cut(s)	42, 369, 454
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	78
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	2 cut(s)	623, 876
SseBI	AGGCCT	1 cut(s)	822
SspMI	CTAG	2 cut(s)	23, 928
StuI	AGGCCT	1 cut(s)	822
StyD4I	CCNGG	1 cut(s)	467
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	675, 781
TaiI	ACGT	3 cut(s)	217, 228, 744
TaqI	TCGA	5 cut(s)	87, 180, 327, 480, 890
TasI	AATT	2 cut(s)	623, 876
TauI	GCSGC	4 cut(s)	159, 263, 289, 722
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	357, 423
Tru9I	TTAA	2 cut(s)	357, 423
TseI	GCWGC	2 cut(s)	30, 872
TspDTI	ATGAA	6 cut(s)	220, 387, 588, 626, 855, 908
TspGWI	ACGGA	1 cut(s)	893
VpaK11BI	GGWCC	1 cut(s)	78
XspI	CTAG	2 cut(s)	23, 928
Zsp2I	ATGCAT	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.