Rmu_sc0004790.1_g000009

Calcineurin-like phosphoesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004790.1
OG0000803
Physical Location & Seq
Reverse (-)
25184 .. 25594
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004790.1_g000009.1.cds

Sequence Viewer

Length: 411 bp
atgtcagacccaaaacccagactagtttgttgcatcggcgacgtccacggcttccacaccaagctccaaaatctctggtccaatctcgaaatctccatccattcttcagacttcgccaccgccctggtcatcttcctcgacgactactgcggccgcggttcggacaccaatgaagtccttgacttcttcgtcgctctcccctccagatacccacatcagaaagacgtcttcattgccggaaaccatgacttcgccttcaccgccttgttgagagtcttgcctctgccactggacgggtccgagttccgcgaggggtggaaggagttcgaggacaaggaggagagagaaaaagatttagagacagagagagggcaagaagatgtaaaaagaaaaagagagaaaagaagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Metallophos

Protein Analysis

136

Amino Acids

15.81

Weight (kDa)

5.37

Isoelectric Point (pI)

42.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
AatII GACGTC 2 cut(s) 45, 228
AccII CGCG 2 cut(s) 156, 309
AciI CCGC 6 cut(s) 120, 150, 154, 156, 261, 307
AcoI YGGCCR 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 90
AcyI GRCGYC 2 cut(s) 42, 225
AfiI CCNNNNNNNGG 2 cut(s) 160, 293
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 123
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 353
AoxI GGCC 1 cut(s) 151
Asp700I GAANNNNTTC 1 cut(s) 323
AspS9I GGNCC 2 cut(s) 78, 297
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 2 cut(s) 78, 297
BbsI GAAGAC 1 cut(s) 220
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 353
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 1 cut(s) 23
BisI GCNGC 2 cut(s) 151, 154
BlsI GCNGC 2 cut(s) 152, 155
Bme1390I CCNGG 1 cut(s) 125
Bme18I GGWCC 2 cut(s) 78, 297
BmgT120I GGNCC 2 cut(s) 78, 297
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 1 cut(s) 125
BmsI GCATC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 187
BsaHI GRCGYC 2 cut(s) 42, 225
BsaJI CCNNGG 3 cut(s) 46, 123, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 160, 293
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 231
BseBI CCWGG 1 cut(s) 125
BseDI CCNNGG 3 cut(s) 46, 123, 154
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 2 cut(s) 160, 293
BseMI GCAATG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 353
BseX3I CGGCCG 1 cut(s) 151
Bsh1236I CGCG 2 cut(s) 156, 309
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 1 cut(s) 153
BsiEI CGRYCG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 237
BslI CCNNNNNNNGG 2 cut(s) 160, 293
BsmAI GTCTC 1 cut(s) 353
BsnI GGCC 1 cut(s) 153
BspACI CCGC 6 cut(s) 120, 150, 154, 156, 261, 307
BspANI GGCC 1 cut(s) 153
BspFNI CGCG 2 cut(s) 156, 309
BspLI GGNNCC 1 cut(s) 298
BsrDI GCAATG 1 cut(s) 231
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 3 cut(s) 46, 123, 154
BssNI GRCGYC 2 cut(s) 42, 225
Bst2UI CCWGG 1 cut(s) 125
BstACI GRCGYC 2 cut(s) 42, 225
BstDSI CCRYGG 2 cut(s) 46, 154
BstF5I GGATG 1 cut(s) 96
BstFNI CGCG 2 cut(s) 156, 309
BstMAI GTCTC 1 cut(s) 353
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 123
BstUI CGCG 2 cut(s) 156, 309
BstV2I GAAGAC 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 1 cut(s) 153
BtgI CCRYGG 2 cut(s) 46, 154
BtsCI GGATG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 287
CciNI GCGGCCGC 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 78, 297
Cfr42I CCGCGG 1 cut(s) 157
CviAII CATG 1 cut(s) 245
CviJI RGCY 3 cut(s) 51, 64, 153
CviKI_1 RGCY 3 cut(s) 51, 64, 153
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
EaeI YGGCCR 1 cut(s) 151
EagI CGGCCG 1 cut(s) 151
EclXI CGGCCG 1 cut(s) 151
Eco47I GGWCC 2 cut(s) 78, 297
Eco52I CGGCCG 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 123
FaeI CATG 1 cut(s) 248
FaiI YATR 1 cut(s) 246
FatI CATG 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 151, 154
FokI GGATG 1 cut(s) 83
Fsp4HI GCNGC 2 cut(s) 151, 154
FspBI CTAG 1 cut(s) 23
GluI GCNGC 2 cut(s) 151, 154
GsuI CTGGAG 1 cut(s) 187
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 237
Hin1I GRCGYC 2 cut(s) 42, 225
Hin1II CATG 1 cut(s) 248
HinfI GANTC 1 cut(s) 273
HpaII CCGG 1 cut(s) 237
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 5 cut(s) 7, 109, 163, 219, 301
Hpy188III TCNNGA 2 cut(s) 86, 204
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 3 cut(s) 44, 143, 194
HpyAV CCTTC 2 cut(s) 265, 313
HpyCH4IV ACGT 2 cut(s) 42, 225
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpySE526I ACGT 2 cut(s) 42, 225
Hsp92I GRCGYC 2 cut(s) 42, 225
Hsp92II CATG 1 cut(s) 248
KspI CCGCGG 1 cut(s) 157
LmnI GCTCC 1 cut(s) 69
LpnPI CCDG 7 cut(s) 31, 61, 110, 137, 217, 250, 275
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 23
MaeII ACGT 2 cut(s) 42, 225
MboII GAAGA 5 cut(s) 96, 124, 178, 220, 389
MlyI GAGTC 1 cut(s) 282
MnlI CCTC 7 cut(s) 146, 211, 291, 304, 322, 331, 362
MroXI GAANNNNTTC 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 156
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 125
MvaI CCWGG 1 cut(s) 125
MvnI CGCG 2 cut(s) 156, 309
MwoI GCNNNNNNNGC 1 cut(s) 260
NlaIII CATG 1 cut(s) 248
NlaIV GGNNCC 1 cut(s) 298
NotI GCGGCCGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 323
PkrI GCNGC 2 cut(s) 152, 155
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 123
PspGI CCWGG 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 298
PspPI GGNCC 2 cut(s) 78, 297
SacII CCGCGG 1 cut(s) 157
SatI GCNGC 2 cut(s) 151, 154
Sau96I GGNCC 2 cut(s) 78, 297
SchI GAGTC 1 cut(s) 282
ScrFI CCNGG 1 cut(s) 125
SetI ASST 3 cut(s) 45, 66, 228
SfaNI GCATC 1 cut(s) 42
Sfr303I CCGCGG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 157
SinI GGWCC 2 cut(s) 78, 297
SpeI ACTAGT 1 cut(s) 22
SsiI CCGC 6 cut(s) 120, 150, 154, 156, 261, 307
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 123
TaiI ACGT 2 cut(s) 45, 228
TaqI TCGA 3 cut(s) 87, 138, 327
TauI GCSGC 2 cut(s) 153, 156
TscAI CASTG 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 186, 220
TspRI CASTG 1 cut(s) 294
VpaK11BI GGWCC 2 cut(s) 78, 297
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 23
ZraI GACGTC 2 cut(s) 43, 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.