Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001096.1

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

62852 .. 65129

Gene Structure 2278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001096.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgtcggacccaaaacccagactagtctgctgcatcggcgacgtccacggcttccacacgaagctccaaaacctctggtccaatctcgaatcctccatcccctcttcagacttcgccaccgccctcgtcatcttcctcggcgactactgcgaccgcggcccagacaccaacaaagtcctcgacttcctcatttccctcccctccagatacccgcatcagaaacacgtcttcatcgcgggaaaccacgacttcgccttcgccggcttcttgagagtcctgcctccgccgccggacgggtccgagttccgggaggggtggaaggagttcgaggacaatgaggagagagaagggtggttcaagggcgaggggtacgagggaatgcaattgcaggggaggagatgggctgggagtatgaaggggtttaacaaggctaaggggactgattaccagggttccatttatgacgctgcgcccacttttgagtcttatggggtgcctcatggctctgccgatctggtgaaggcagttcctgatgatcataagaagtttcttgccgatatggtttgggtgcatgaagaggatgatgtctgtgtagagattgagggtgaaaccaaacactgtaaattgattgctgtgcacgccggtttggagaaagataaagatgtcaaacaacagttggagtttctgaaagccagagatactcgggtacctaagatagaggctctgagtggcaggaaagacgtgtggaatataccagaggaactgaaaaagactcaaactgttattgtaagtggacatcatgggaaacttcatattgaaggcttaaggctgattattgatgaaggcggtggtatggcaaagaacccggtggctgcaattttactcccctctatgaggatagtccgtgatacagacattttggcaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

309

Amino Acids

34.59

Weight (kDa)

5.72

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	45
Acc65I	GGTACC	1 cut(s)	706
AccB1I	GGYRCC	2 cut(s)	493, 706
AccII	CGCG	2 cut(s)	156, 236
AciI	CCGC	8 cut(s)	120, 154, 156, 212, 236, 284, 287, 846
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	2 cut(s)	371, 708
AfiI	CCNNNNNNNGG	3 cut(s)	293, 306, 894
AflII	CTTAAG	1 cut(s)	823
AflIII	ACRYGT	2 cut(s)	223, 741
AgsI	TTSAA	2 cut(s)	358, 818
AhlI	ACTAGT	1 cut(s)	22
AjiI	CACGTC	2 cut(s)	226, 742
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw21I	GWGCWC	1 cut(s)	639
Alw44I	GTGCAC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	702
AoxI	GGCC	1 cut(s)	157
ApaLI	GTGCAC	1 cut(s)	635
ApeKI	GCWGC	3 cut(s)	30, 467, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	706
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	4 cut(s)	7, 78, 158, 297
AsuC2I	CCSGG	2 cut(s)	308, 866
AsuHPI	GGTGA	2 cut(s)	529, 617
AvaI	CYCGRG	1 cut(s)	702
AvaII	GGWCC	3 cut(s)	7, 78, 297
BaeGI	GKGCMC	1 cut(s)	639
BaeI	ACNNNNGTAYC	4 cut(s)	690, 690, 723, 723
BanI	GGYRCC	2 cut(s)	493, 706
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	3 cut(s)	17, 454, 859
BccI	CCATC	2 cut(s)	104, 393
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	308, 866
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	2 cut(s)	23, 928
BfrI	CTTAAG	1 cut(s)	823
BisI	GCNGC	5 cut(s)	31, 157, 287, 468, 873
BlsI	GCNGC	5 cut(s)	32, 158, 288, 469, 874
Bme1390I	CCNGG	3 cut(s)	308, 449, 866
Bme18I	GGWCC	3 cut(s)	7, 78, 297
BmeT110I	CYCGRG	1 cut(s)	702
BmgBI	CACGTC	2 cut(s)	226, 742
BmgT120I	GGNCC	4 cut(s)	7, 78, 158, 297
BmiI	GGNNCC	5 cut(s)	9, 298, 454, 495, 708
BmrFI	CCNGG	3 cut(s)	308, 449, 866
BmsI	GCATC	2 cut(s)	42, 223
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	2 cut(s)	308, 866
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	46, 136, 154, 448
Bsc4I	CCNNNNNNNGG	3 cut(s)	293, 306, 894
Bse118I	RCCGGY	2 cut(s)	260, 641
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	4 cut(s)	46, 136, 154, 448
BseGI	GGATG	2 cut(s)	96, 586
BseLI	CCNNNNNNNGG	3 cut(s)	293, 306, 894
BseMII	CTCAG	1 cut(s)	716
BseRI	GAGGAG	2 cut(s)	353, 409
BseSI	GKGCMC	1 cut(s)	639
BseXI	GCAGC	3 cut(s)	17, 454, 859
BseYI	CCCAGC	1 cut(s)	404
Bsh1236I	CGCG	2 cut(s)	156, 236
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	159
BshNI	GGYRCC	2 cut(s)	493, 706
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	702
BsiSI	CCGG	5 cut(s)	261, 290, 307, 642, 866
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	3 cut(s)	293, 306, 894
BsmFI	GGGAC	1 cut(s)	451
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	159
BsoBI	CYCGRG	1 cut(s)	702
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	2 cut(s)	511, 535
BspACI	CCGC	8 cut(s)	120, 154, 156, 212, 236, 284, 287, 846
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	1 cut(s)	717
BspFNI	CGCG	2 cut(s)	156, 236
BspLI	GGNNCC	5 cut(s)	9, 298, 454, 495, 708
BspT107I	GGYRCC	2 cut(s)	493, 706
BspTI	CTTAAG	1 cut(s)	823
BsrFI	RCCGGY	2 cut(s)	260, 641
BssAI	RCCGGY	2 cut(s)	260, 641
BssECI	CCNNGG	4 cut(s)	46, 136, 154, 448
BssMI	GATC	2 cut(s)	511, 535
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	3 cut(s)	620, 675, 781
Bst6I	CTCTTC	2 cut(s)	109, 570
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	823
BstC8I	GCNNGC	2 cut(s)	262, 639
BstDEI	CTNAG	3 cut(s)	432, 711, 725
BstDSI	CCRYGG	2 cut(s)	46, 154
BstENI	CCTNNNNNAGG	1 cut(s)	892
BstF5I	GGATG	2 cut(s)	96, 586
BstFNI	CGCG	2 cut(s)	156, 236
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	2 cut(s)	514, 538
BstMBI	GATC	2 cut(s)	511, 535
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	5 cut(s)	36, 147, 156, 286, 638
BstNI	CCWGG	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	306, 447, 864
BstSLI	GKGCMC	1 cut(s)	639
BstUI	CGCG	2 cut(s)	156, 236
BstV1I	GCAGC	3 cut(s)	17, 454, 859
BstV2I	GAAGAC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	2 cut(s)	46, 154
BtgZI	GCGATG	1 cut(s)	217
BtrI	CACGTC	2 cut(s)	226, 742
BtsCI	GGATG	2 cut(s)	96, 586
BtsIMutI	CAGTG	1 cut(s)	616
Cac8I	GCNNGC	2 cut(s)	262, 639
CaiI	CAGNNNCTG	1 cut(s)	530
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	2 cut(s)	260, 641
Cfr13I	GGNCC	4 cut(s)	7, 78, 158, 297
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	2 cut(s)	370, 707
CviAII	CATG	3 cut(s)	500, 572, 800
CviQI	GTAC	2 cut(s)	370, 707
DdeI	CTNAG	3 cut(s)	432, 711, 725
DpnI	GATC	2 cut(s)	513, 537
DpnII	GATC	2 cut(s)	511, 535
Eam1104I	CTCTTC	2 cut(s)	109, 570
EarI	CTCTTC	2 cut(s)	109, 570
EciI	GGCGGA	1 cut(s)	273
Eco47I	GGWCC	3 cut(s)	7, 78, 297
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	702
EcoNI	CCTNNNNNAGG	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	503, 575, 803
FaqI	GGGAC	1 cut(s)	451
FatI	CATG	3 cut(s)	499, 571, 799
FauI	CCCGC	2 cut(s)	219, 229
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	5 cut(s)	31, 157, 287, 468, 873
FokI	GGATG	2 cut(s)	83, 593
Fsp4HI	GCNGC	5 cut(s)	31, 157, 287, 468, 873
FspBI	CTAG	2 cut(s)	23, 928
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	5 cut(s)	31, 157, 287, 468, 873
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	187
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	5 cut(s)	261, 290, 307, 642, 866
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	472
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	503, 575, 803
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	4 cut(s)	89, 273, 482, 772
HpaII	CCGG	5 cut(s)	261, 290, 307, 642, 866
HphI	GGTGA	2 cut(s)	529, 617
Hpy166II	GTNNAC	3 cut(s)	46, 637, 794
Hpy188I	TCNGA	6 cut(s)	7, 109, 219, 301, 687, 726
Hpy188III	TCNNGA	4 cut(s)	86, 204, 268, 530
Hpy8I	GTNNAC	3 cut(s)	46, 637, 794
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	7 cut(s)	265, 313, 341, 409, 514, 812, 836
HpyCH4III	ACNGT	3 cut(s)	620, 675, 781
HpyCH4IV	ACGT	3 cut(s)	42, 225, 741
HpyCH4V	TGCA	6 cut(s)	33, 382, 388, 571, 637, 875
HpyF10VI	GCNNNNNNNGC	5 cut(s)	36, 147, 156, 286, 638
HpyF3I	CTNAG	3 cut(s)	432, 711, 725
HpySE526I	ACGT	3 cut(s)	42, 225, 741
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	503, 575, 803
HspAI	GCGC	1 cut(s)	470
KpnI	GGTACC	1 cut(s)	710
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Ksp22I	TGATCA	1 cut(s)	535
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	511, 535
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	3 cut(s)	17, 454, 859
LweI	GCATC	2 cut(s)	42, 223
MaeI	CTAG	2 cut(s)	23, 928
MaeII	ACGT	3 cut(s)	42, 225, 741
MalI	GATC	2 cut(s)	513, 537
MboI	GATC	2 cut(s)	511, 535
MboII	GAAGA	4 cut(s)	96, 124, 220, 587
MfeI	CAATTG	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	3 cut(s)	383, 623, 876
MlyI	GAGTC	3 cut(s)	282, 491, 766
MmeI	TCCRAC	1 cut(s)	657
MroNI	GCCGGC	1 cut(s)	260
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	2 cut(s)	423, 824
MspA1I	CMGCKG	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	823
MspI	CCGG	5 cut(s)	261, 290, 307, 642, 866
MspR9I	CCNGG	3 cut(s)	308, 449, 866
MunI	CAATTG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	449
MvnI	CGCG	2 cut(s)	156, 236
MwoI	GCNNNNNNNGC	5 cut(s)	36, 147, 156, 286, 638
NaeI	GCCGGC	1 cut(s)	262
NciI	CCSGG	2 cut(s)	308, 866
NdeII	GATC	2 cut(s)	511, 535
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	3 cut(s)	503, 575, 803
NlaIV	GGNNCC	5 cut(s)	9, 298, 454, 495, 708
NmeAIII	GCCGAG	1 cut(s)	117
PctI	GAATGC	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	262
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	5 cut(s)	32, 158, 288, 469, 874
PleI	GAGTC	3 cut(s)	281, 490, 766
PpsI	GAGTC	3 cut(s)	281, 490, 766
Psp6I	CCWGG	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	5 cut(s)	9, 298, 454, 495, 708
PspPI	GGNCC	4 cut(s)	7, 78, 158, 297
PstNI	CAGNNNCTG	1 cut(s)	530
RsaI	GTAC	2 cut(s)	371, 708
RsaNI	GTAC	2 cut(s)	370, 707
SacII	CCGCGG	1 cut(s)	157
SaqAI	TTAA	2 cut(s)	423, 824
SatI	GCNGC	5 cut(s)	31, 157, 287, 468, 873
Sau3AI	GATC	2 cut(s)	511, 535
Sau96I	GGNCC	4 cut(s)	7, 78, 158, 297
SchI	GAGTC	3 cut(s)	282, 491, 766
ScrFI	CCNGG	3 cut(s)	308, 449, 866
SduI	GDGCHC	1 cut(s)	639
SetI	ASST	6 cut(s)	45, 66, 75, 228, 712, 744
SfaNI	GCATC	2 cut(s)	42, 223
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	7, 78, 297
SmlI	CTYRAG	2 cut(s)	268, 823
SmoI	CTYRAG	2 cut(s)	268, 823
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	3 cut(s)	383, 623, 876
SsiI	CCGC	8 cut(s)	120, 154, 156, 212, 236, 284, 287, 846
SspMI	CTAG	2 cut(s)	23, 928
StyD4I	CCNGG	3 cut(s)	306, 447, 864
TaaI	ACNGT	3 cut(s)	620, 675, 781
TaiI	ACGT	3 cut(s)	45, 228, 744
TaqI	TCGA	3 cut(s)	87, 180, 327
TasI	AATT	3 cut(s)	383, 623, 876
TauI	GCSGC	2 cut(s)	159, 289
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	2 cut(s)	423, 824
Tru9I	TTAA	2 cut(s)	423, 824
TscAI	CASTG	1 cut(s)	623
TseI	GCWGC	3 cut(s)	30, 467, 872
TspDTI	ATGAA	5 cut(s)	220, 428, 588, 800, 855
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	1 cut(s)	623
Vha464I	CTTAAG	1 cut(s)	823
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	3 cut(s)	7, 78, 297
XagI	CCTNNNNNAGG	1 cut(s)	892
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	2 cut(s)	23, 928
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.