Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Forward (+)

44500874 .. 44501670

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG237500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTGAAGCTCAACCCGGATTGCTCCAATAGCTCAGTCTTGAACTTCTCAATACACTCATCCTTAGCTTCAAAGCATTCCCTCACAACCTTACCTAATTGCTTTCCATGTTCATACGGTGAGGACTGTCGATCTAATTTCATAAACTCGTGTAGCACCGGCGTCTTAACTTGGGGCGGATCTGTGGGTAGGAGCGCAATATGGATCAACTTCGCCACCGCCCTTGTCATCTTCCTCGGCGACTACTGCAGCCGCGGCCAAGACACCAACGAAGTCCTTGACTTATTCGTCGCTCTCCCCTCCAGATACCCACATCAGAAAGACATCTTCATTGCCGGAAACCATGACTTCGCCTTTGCCGCCTTGTTGAGAGTCCTGCCTCTGCCACCGGACTGGTCCAAGTTCCACGAAGGGTGGAAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

141

Amino Acids

15.59

Weight (kDa)

6.16

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	74 - 136	9.2e-07	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AccII	CGCG	1 cut(s)	255
AciI	CCGC	5 cut(s)	177, 219, 253, 255, 360
AclWI	GGATC	2 cut(s)	187, 212
AcoI	YGGCCR	1 cut(s)	256
AcyI	GRCGYC	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	43, 72
AluBI	AGCT	3 cut(s)	10, 33, 68
AluI	AGCT	3 cut(s)	10, 33, 68
AlwI	GGATC	2 cut(s)	187, 212
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	249
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	2 cut(s)	16, 131
AvaII	GGWCC	1 cut(s)	396
BauI	CACGAG	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	247
BisI	GCNGC	4 cut(s)	250, 253, 256, 360
BlsI	GCNGC	4 cut(s)	251, 254, 257, 361
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	286
Bpu10I	CCTNAGC	1 cut(s)	64
BpuMI	CCSGG	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	235, 253
BsaWI	WCCGGW	1 cut(s)	388
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	235, 253
BseGI	GGATG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	258
BsiSI	CCGG	4 cut(s)	17, 159, 336, 389
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	131, 179, 204
BspACI	CCGC	5 cut(s)	177, 219, 253, 255, 360
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	255
BspMAI	CTGCAG	1 cut(s)	251
BspPI	GGATC	2 cut(s)	187, 212
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	398
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	235, 253
BssMI	GATC	3 cut(s)	131, 179, 204
BssNI	GRCGYC	1 cut(s)	162
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst4CI	ACNGT	2 cut(s)	119, 128
BstACI	GRCGYC	1 cut(s)	162
BstDEI	CTNAG	2 cut(s)	34, 64
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	59
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	3 cut(s)	134, 182, 207
BstMBI	GATC	3 cut(s)	131, 179, 204
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 246, 255, 359
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	1 cut(s)	247
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	59
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	396
Cfr42I	CCGCGG	1 cut(s)	256
CseI	GACGC	1 cut(s)	151
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	2 cut(s)	108, 344
CviJI	RGCY	5 cut(s)	10, 33, 68, 252, 258
CviKI_1	RGCY	5 cut(s)	10, 33, 68, 252, 258
DdeI	CTNAG	2 cut(s)	34, 64
DpnI	GATC	3 cut(s)	133, 181, 206
DpnII	GATC	3 cut(s)	131, 179, 204
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
EaeI	YGGCCR	1 cut(s)	256
EciI	GGCGGA	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	396
FaeI	CATG	2 cut(s)	111, 347
FaiI	YATR	5 cut(s)	109, 115, 143, 202, 345
FatI	CATG	2 cut(s)	107, 343
Fnu4HI	GCNGC	4 cut(s)	250, 253, 256, 360
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	250, 253, 256, 360
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	4 cut(s)	250, 253, 256, 360
GsuI	CTGGAG	1 cut(s)	286
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	4 cut(s)	17, 159, 336, 389
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	2 cut(s)	111, 347
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	4 cut(s)	17, 159, 336, 389
HphI	GGTGA	2 cut(s)	16, 131
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	2 cut(s)	40, 303
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	2 cut(s)	404, 412
HpyCH4III	ACNGT	2 cut(s)	119, 128
HpyCH4V	TGCA	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 246, 255, 359
HpyF3I	CTNAG	2 cut(s)	34, 64
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	111, 347
HspAI	GCGC	1 cut(s)	195
KspI	CCGCGG	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	131, 179, 204
LmnI	GCTCC	2 cut(s)	29, 192
LpnPI	CCDG	7 cut(s)	30, 172, 316, 349, 379, 389, 402
Lsp1109I	GCAGC	1 cut(s)	261
MalI	GATC	3 cut(s)	133, 181, 206
MboI	GATC	3 cut(s)	131, 179, 204
MboII	GAAGA	2 cut(s)	223, 319
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	2 cut(s)	97, 136
MlyI	GAGTC	1 cut(s)	381
MnlI	CCTC	5 cut(s)	92, 115, 245, 310, 390
MseI	TTAA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	4 cut(s)	17, 159, 336, 389
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	1 cut(s)	76
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	30, 246, 255, 359
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	3 cut(s)	131, 179, 204
NlaIII	CATG	2 cut(s)	111, 347
NmeAIII	GCCGAG	1 cut(s)	216
PctI	GAATGC	1 cut(s)	76
PkrI	GCNGC	4 cut(s)	251, 254, 257, 361
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PspPI	GGNCC	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	179
SacII	CCGCGG	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	4 cut(s)	250, 253, 256, 360
Sau3AI	GATC	3 cut(s)	131, 179, 204
Sau96I	GGNCC	1 cut(s)	396
SchI	GAGTC	1 cut(s)	381
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	5 cut(s)	12, 35, 70, 92, 97
SfcI	CTRYAG	1 cut(s)	247
Sfr303I	CCGCGG	1 cut(s)	256
SgrAI	CRCCGGYG	1 cut(s)	158
SgrBI	CCGCGG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	396
Sse9I	AATT	2 cut(s)	97, 136
SsiI	CCGC	5 cut(s)	177, 219, 253, 255, 360
StyD4I	CCNGG	1 cut(s)	15
TaaI	ACNGT	2 cut(s)	119, 128
TaqI	TCGA	1 cut(s)	130
TasI	AATT	2 cut(s)	97, 136
TauI	GCSGC	3 cut(s)	255, 258, 362
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseI	GCWGC	1 cut(s)	249
TspDTI	ATGAA	3 cut(s)	102, 130, 319
VpaK11BI	GGWCC	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.