Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000820.1

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

98462 .. 99204

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000820.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgaatctcgatctatttgccgagatcgatggtgtcgatctgtttgccgagattgatggtgtcgatctgtctgaggcgagaaagaatcacaagaaggagcaaaacttcgccaccgccctcgtcatcttcctcggtgactactgcggccgcggcccagacaccaacgaagtcctggacttcttcgtcgctctcccctccagatacccacatcagaaagacgtcttcatcgccggaaaccatgacttcagccgcggcccagacaccaacgaagtcctggacttcttcgtcgctctcccctccagatacccacatcagaaagacgtcttcattgccggaaaccatgacttcgccttcgccgcgttgttgagagtgctgcctcttccaccggacgggtccaagttccgcgaggggtggaaggagttcgatgacgaggaggagagagaaaaagatctggagacagagagagggcaagaagatgtaaaaagaaagagagatcttcttttaacaaagaggaaatcagagaaagatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

177

Amino Acids

20.36

Weight (kDa)

4.86

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	182, 284
AatII	GACGTC	2 cut(s)	222, 324
AccII	CGCG	4 cut(s)	150, 252, 359, 405
AciI	CCGC	8 cut(s)	114, 144, 148, 150, 250, 252, 357, 403
AcoI	YGGCCR	1 cut(s)	145
AcuI	CTGAAG	1 cut(s)	229
AcyI	GRCGYC	2 cut(s)	219, 321
AfiI	CCNNNNNNNGG	1 cut(s)	389
AjnI	CCWGG	2 cut(s)	171, 273
Alw26I	GTCTC	1 cut(s)	449
AoxI	GGCC	3 cut(s)	145, 151, 253
ApeKI	GCWGC	1 cut(s)	373
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
Asp700I	GAANNNNTTC	1 cut(s)	419
AspS9I	GGNCC	3 cut(s)	152, 254, 393
AsuHPI	GGTGA	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	393
BbsI	GAAGAC	2 cut(s)	214, 316
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	2 cut(s)	23, 50
BcgI	CGANNNNNNTGC	3 cut(s)	26, 33, 60
BciT130I	CCWGG	2 cut(s)	173, 275
BcoDI	GTCTC	1 cut(s)	449
BglII	AGATCT	2 cut(s)	448, 493
BisI	GCNGC	7 cut(s)	145, 148, 151, 250, 253, 357, 374
BlsI	GCNGC	7 cut(s)	146, 149, 152, 251, 254, 358, 375
Bme1390I	CCNGG	2 cut(s)	173, 275
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	3 cut(s)	152, 254, 393
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	2 cut(s)	173, 275
BpiI	GAAGAC	2 cut(s)	214, 316
BpmI	CTGGAG	3 cut(s)	181, 283, 473
Bsa29I	ATCGAT	1 cut(s)	27
BsaHI	GRCGYC	2 cut(s)	219, 321
BsaJI	CCNNGG	3 cut(s)	130, 148, 250
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	173, 275
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	3 cut(s)	130, 148, 250
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	446, 449
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	360
Bsh1236I	CGCG	4 cut(s)	150, 252, 359, 405
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	147, 153, 255
BshVI	ATCGAT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	231, 333, 386
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	1 cut(s)	449
BsnI	GGCC	3 cut(s)	147, 153, 255
Bsp143I	GATC	6 cut(s)	10, 24, 37, 64, 448, 493
BspACI	CCGC	8 cut(s)	114, 144, 148, 150, 250, 252, 357, 403
BspANI	GGCC	3 cut(s)	147, 153, 255
BspCNI	CTCAG	1 cut(s)	64
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	4 cut(s)	150, 252, 359, 405
BspLI	GGNNCC	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	130, 148, 250
BssMI	GATC	6 cut(s)	10, 24, 37, 64, 448, 493
BssNI	GRCGYC	2 cut(s)	219, 321
Bst2UI	CCWGG	2 cut(s)	173, 275
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	2 cut(s)	219, 321
BstDEI	CTNAG	1 cut(s)	72
BstDSI	CCRYGG	2 cut(s)	148, 250
BstFNI	CGCG	4 cut(s)	150, 252, 359, 405
BstKTI	GATC	6 cut(s)	13, 27, 40, 67, 451, 496
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	6 cut(s)	10, 24, 37, 64, 448, 493
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 356
BstNI	CCWGG	2 cut(s)	173, 275
BstSCI	CCNGG	2 cut(s)	171, 273
BstUI	CGCG	4 cut(s)	150, 252, 359, 405
BstV1I	GCAGC	1 cut(s)	360
BstV2I	GAAGAC	2 cut(s)	214, 316
BstX2I	RGATCY	2 cut(s)	448, 493
BstYI	RGATCY	2 cut(s)	448, 493
BstZI	CGGCCG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	3 cut(s)	147, 153, 255
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	2 cut(s)	148, 250
BtgZI	GCGATG	1 cut(s)	211
CciNI	GCGGCCGC	1 cut(s)	145
Cfr13I	GGNCC	3 cut(s)	152, 254, 393
Cfr42I	CCGCGG	2 cut(s)	151, 253
ClaI	ATCGAT	1 cut(s)	27
CviAII	CATG	2 cut(s)	239, 341
CviJI	RGCY	4 cut(s)	147, 153, 249, 255
CviKI_1	RGCY	4 cut(s)	147, 153, 249, 255
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	6 cut(s)	12, 26, 39, 66, 450, 495
DpnII	GATC	6 cut(s)	10, 24, 37, 64, 448, 493
DrdI	GACNNNNNNGTC	2 cut(s)	182, 284
DseDI	GACNNNNNNGTC	2 cut(s)	182, 284
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EclXI	CGGCCG	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	393
Eco52I	CGGCCG	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	171, 273
FaeI	CATG	2 cut(s)	242, 344
FaiI	YATR	3 cut(s)	240, 342, 530
FatI	CATG	2 cut(s)	238, 340
Fnu4HI	GCNGC	7 cut(s)	145, 148, 151, 250, 253, 357, 374
Fsp4HI	GCNGC	7 cut(s)	145, 148, 151, 250, 253, 357, 374
GluI	GCNGC	7 cut(s)	145, 148, 151, 250, 253, 357, 374
GsuI	CTGGAG	3 cut(s)	181, 283, 473
HaeIII	GGCC	3 cut(s)	147, 153, 255
HapII	CCGG	3 cut(s)	231, 333, 386
Hin1I	GRCGYC	2 cut(s)	219, 321
Hin1II	CATG	2 cut(s)	242, 344
HinfI	GANTC	2 cut(s)	4, 85
HpaII	CCGG	3 cut(s)	231, 333, 386
HphI	GGTGA	1 cut(s)	146
Hpy188I	TCNGA	4 cut(s)	73, 213, 315, 520
Hpy188III	TCNNGA	4 cut(s)	8, 198, 300, 452
Hpy99I	CGWCG	2 cut(s)	188, 290
HpyAV	CCTTC	3 cut(s)	88, 361, 409
HpyCH4IV	ACGT	2 cut(s)	219, 321
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 356
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	2 cut(s)	219, 321
Hsp92I	GRCGYC	2 cut(s)	219, 321
Hsp92II	CATG	2 cut(s)	242, 344
KspI	CCGCGG	2 cut(s)	151, 253
Kzo9I	GATC	6 cut(s)	10, 24, 37, 64, 448, 493
LmnI	GCTCC	1 cut(s)	97
Lsp1109I	GCAGC	1 cut(s)	360
MaeII	ACGT	2 cut(s)	219, 321
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	6 cut(s)	12, 26, 39, 66, 450, 495
MboI	GATC	6 cut(s)	10, 24, 37, 64, 448, 493
MboII	GAAGA	8 cut(s)	118, 172, 214, 274, 316, 371, 485, 488
MflI	RGATCY	2 cut(s)	448, 493
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	1 cut(s)	503
MspA1I	CMGCKG	2 cut(s)	150, 252
MspI	CCGG	3 cut(s)	231, 333, 386
MspR9I	CCNGG	2 cut(s)	173, 275
MvaI	CCWGG	2 cut(s)	173, 275
MvnI	CGCG	4 cut(s)	150, 252, 359, 405
MwoI	GCNNNNNNNGC	2 cut(s)	150, 356
NdeII	GATC	6 cut(s)	10, 24, 37, 64, 448, 493
NlaIII	CATG	2 cut(s)	242, 344
NlaIV	GGNNCC	1 cut(s)	394
NmeAIII	GCCGAG	2 cut(s)	46, 73
NmuCI	GTSAC	1 cut(s)	134
NotI	GCGGCCGC	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	4, 85
PfoI	TCCNGGA	2 cut(s)	171, 273
PkrI	GCNGC	7 cut(s)	146, 149, 152, 251, 254, 358, 375
Psp6I	CCWGG	2 cut(s)	171, 273
PspGI	CCWGG	2 cut(s)	171, 273
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	3 cut(s)	152, 254, 393
PsuI	RGATCY	2 cut(s)	448, 493
SacII	CCGCGG	2 cut(s)	151, 253
SaqAI	TTAA	1 cut(s)	503
SatI	GCNGC	7 cut(s)	145, 148, 151, 250, 253, 357, 374
Sau3AI	GATC	6 cut(s)	10, 24, 37, 64, 448, 493
Sau96I	GGNCC	3 cut(s)	152, 254, 393
ScrFI	CCNGG	2 cut(s)	173, 275
SetI	ASST	2 cut(s)	222, 324
Sfr303I	CCGCGG	2 cut(s)	151, 253
SgrBI	CCGCGG	2 cut(s)	151, 253
SinI	GGWCC	1 cut(s)	393
SsiI	CCGC	8 cut(s)	114, 144, 148, 150, 250, 252, 357, 403
StyD4I	CCNGG	2 cut(s)	171, 273
TaiI	ACGT	2 cut(s)	222, 324
TaqI	TCGA	5 cut(s)	9, 27, 36, 63, 423
TauI	GCSGC	6 cut(s)	147, 150, 153, 252, 255, 359
TfiI	GAWTC	2 cut(s)	4, 85
Tru1I	TTAA	1 cut(s)	503
Tru9I	TTAA	1 cut(s)	503
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	1 cut(s)	373
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	3 cut(s)	17, 214, 316
VpaK11BI	GGWCC	1 cut(s)	393
XcmI	CCANNNNNNNNNTGG	2 cut(s)	169, 271
XmnI	GAANNNNTTC	1 cut(s)	419
ZraI	GACGTC	2 cut(s)	220, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.