Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004941.1

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

43474 .. 44229

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004941.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgtcagacccaaaacccagactagtctgttgcatcggtgatgtccacgacttccacaccaagctccaaaatctctggtctaatctcgaaatctccattccttattcagacttcgccaccgccctcatcatcttccttggtgagtactgcggtcgcggcccagacaccaacgaagtccttgacttcttcatcgtcctcccctccatatacccacgtcagagagacgtcttcatcgccggaaaccacgacttagccttcgccgccttcttaagagtcctgccaccaccgccggatgggtccaagttcgaggacagtgaagagaccagacaccaacgaaggaaaccaccaacgaagagaccagacaccaacgaagtccttgacttctccgtcgttctcccttccatatacagacgtcagagagacgtcttcatcgccggaaaccacgacttagccttcgccgccttcttgggtgtcctgcctccgccgccagacaccaacgaagtccttgacttcttcgtcgttctcccttccatatacagacgtcagagagacgtcttcatcgccggaaaccacgacttagccttcgccgccttcttaagagtcctgccaccgccgccggatgggtccaagttcgaggacagtgaagagagagaaaaagatctggagacagagaaaggggaagaagaagtaaaaagaaaaaaaggaaaagaaagaaaaaaacggagagaaaaaaaaaggaaaaaaaaaagtctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

251

Amino Acids

28.87

Weight (kDa)

7.72

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	386, 515
AatII	GACGTC	5 cut(s)	228, 415, 426, 544, 555
AccII	CGCG	1 cut(s)	156
AcyI	GRCGYC	5 cut(s)	225, 412, 423, 541, 552
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	2 cut(s)	293, 620
AflII	CTTAAG	2 cut(s)	268, 595
AhlI	ACTAGT	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	215
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	6 cut(s)	216, 314, 349, 414, 543, 659
AoxI	GGCC	1 cut(s)	157
ArsI	GACNNNNNNTTYG	6 cut(s)	239, 271, 437, 469, 566, 598
AspS9I	GGNCC	3 cut(s)	158, 297, 624
AsuHPI	GGTGA	2 cut(s)	50, 152
AvaII	GGWCC	2 cut(s)	297, 624
BbsI	GAAGAC	3 cut(s)	220, 418, 547
BccI	CCATC	2 cut(s)	287, 614
BcoDI	GTCTC	6 cut(s)	216, 314, 349, 414, 543, 659
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	1 cut(s)	23
BfrI	CTTAAG	2 cut(s)	268, 595
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	6 cut(s)	157, 261, 459, 485, 588, 614
BlsI	GCNGC	6 cut(s)	158, 262, 460, 486, 589, 615
BmcAI	AGTACT	1 cut(s)	146
Bme18I	GGWCC	2 cut(s)	297, 624
BmgBI	CACGTC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	158, 297, 624
BmiI	GGNNCC	2 cut(s)	298, 625
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	3 cut(s)	220, 418, 547
BpmI	CTGGAG	1 cut(s)	683
BsaHI	GRCGYC	5 cut(s)	225, 412, 423, 541, 552
BsaI	GGTCTC	2 cut(s)	314, 349
BsaJI	CCNNGG	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 620
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	2 cut(s)	298, 625
BseLI	CCNNNNNNNGG	2 cut(s)	293, 620
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	5 cut(s)	237, 290, 435, 564, 617
BslI	CCNNNNNNNGG	2 cut(s)	293, 620
BsmAI	GTCTC	6 cut(s)	216, 314, 349, 414, 543, 659
BsmBI	CGTCTC	3 cut(s)	216, 414, 543
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	2 cut(s)	314, 349
Bsp143I	GATC	1 cut(s)	658
BspANI	GGCC	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	298, 625
BspTI	CTTAAG	2 cut(s)	268, 595
BspTNI	GGTCTC	2 cut(s)	314, 349
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	658
BssNI	GRCGYC	5 cut(s)	225, 412, 423, 541, 552
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	2 cut(s)	314, 641
Bst6I	CTCTTC	3 cut(s)	312, 347, 639
BstACI	GRCGYC	5 cut(s)	225, 412, 423, 541, 552
BstAFI	CTTAAG	2 cut(s)	268, 595
BstDEI	CTNAG	3 cut(s)	250, 448, 577
BstF5I	GGATG	2 cut(s)	298, 625
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	661
BstMAI	GTCTC	6 cut(s)	216, 314, 349, 414, 543, 659
BstMBI	GATC	1 cut(s)	658
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	7 cut(s)	156, 260, 286, 458, 484, 587, 613
BstUI	CGCG	1 cut(s)	156
BstV2I	GAAGAC	3 cut(s)	220, 418, 547
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	159
BtgZI	GCGATG	3 cut(s)	217, 415, 544
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	298, 625
BtsIMutI	CAGTG	2 cut(s)	319, 646
Cfr13I	GGNCC	3 cut(s)	158, 297, 624
Csp6I	GTAC	1 cut(s)	145
CviJI	RGCY	5 cut(s)	64, 159, 254, 452, 581
CviKI_1	RGCY	5 cut(s)	64, 159, 254, 452, 581
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	250, 448, 577
DpnI	GATC	1 cut(s)	660
DpnII	GATC	1 cut(s)	658
DrdI	GACNNNNNNGTC	2 cut(s)	386, 515
DseDI	GACNNNNNNGTC	2 cut(s)	386, 515
Eam1104I	CTCTTC	3 cut(s)	312, 347, 639
EarI	CTCTTC	3 cut(s)	312, 347, 639
EciI	GGCGGA	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	136
Eco31I	GGTCTC	2 cut(s)	314, 349
Eco47I	GGWCC	2 cut(s)	297, 624
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	3 cut(s)	216, 414, 543
FaiI	YATR	7 cut(s)	206, 208, 404, 406, 533, 535, 754
Fnu4HI	GCNGC	6 cut(s)	157, 261, 459, 485, 588, 614
FokI	GGATG	2 cut(s)	305, 632
Fsp4HI	GCNGC	6 cut(s)	157, 261, 459, 485, 588, 614
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	6 cut(s)	157, 261, 459, 485, 588, 614
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	5 cut(s)	237, 290, 435, 564, 617
Hin1I	GRCGYC	5 cut(s)	225, 412, 423, 541, 552
HinfI	GANTC	2 cut(s)	273, 600
HpaII	CCGG	5 cut(s)	237, 290, 435, 564, 617
HphI	GGTGA	2 cut(s)	50, 152
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	5 cut(s)	7, 109, 219, 417, 546
Hpy188III	TCNNGA	2 cut(s)	86, 662
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	2 cut(s)	392, 521
HpyAV	CCTTC	9 cut(s)	265, 274, 330, 408, 463, 472, 537, 592, 601
HpyCH4III	ACNGT	2 cut(s)	314, 641
HpyCH4IV	ACGT	6 cut(s)	214, 225, 412, 423, 541, 552
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	7 cut(s)	156, 260, 286, 458, 484, 587, 613
HpyF3I	CTNAG	3 cut(s)	250, 448, 577
HpySE526I	ACGT	6 cut(s)	214, 225, 412, 423, 541, 552
Hsp92I	GRCGYC	5 cut(s)	225, 412, 423, 541, 552
Kzo9I	GATC	1 cut(s)	658
LmnI	GCTCC	1 cut(s)	69
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	6 cut(s)	214, 225, 412, 423, 541, 552
MalI	GATC	1 cut(s)	660
MboI	GATC	1 cut(s)	658
MflI	RGATCY	1 cut(s)	658
MlyI	GAGTC	2 cut(s)	282, 609
MnlI	CCTC	6 cut(s)	134, 206, 211, 301, 489, 628
MseI	TTAA	2 cut(s)	269, 596
MspCI	CTTAAG	2 cut(s)	268, 595
MspI	CCGG	5 cut(s)	237, 290, 435, 564, 617
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	7 cut(s)	156, 260, 286, 458, 484, 587, 613
NdeII	GATC	1 cut(s)	658
NlaIV	GGNNCC	2 cut(s)	298, 625
PkrI	GCNGC	6 cut(s)	158, 262, 460, 486, 589, 615
PleI	GAGTC	2 cut(s)	281, 608
PpsI	GAGTC	2 cut(s)	281, 608
PspN4I	GGNNCC	2 cut(s)	298, 625
PspPI	GGNCC	3 cut(s)	158, 297, 624
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	269, 596
SatI	GCNGC	6 cut(s)	157, 261, 459, 485, 588, 614
Sau3AI	GATC	1 cut(s)	658
Sau96I	GGNCC	3 cut(s)	158, 297, 624
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	2 cut(s)	282, 609
SetI	ASST	7 cut(s)	66, 217, 228, 415, 426, 544, 555
SfaNI	GCATC	1 cut(s)	42
SinI	GGWCC	2 cut(s)	297, 624
SmlI	CTYRAG	2 cut(s)	268, 595
SmoI	CTYRAG	2 cut(s)	268, 595
SpeI	ACTAGT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	314, 641
TaiI	ACGT	6 cut(s)	217, 228, 415, 426, 544, 555
TaqI	TCGA	3 cut(s)	87, 306, 633
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	6 cut(s)	159, 263, 461, 487, 590, 616
Tru1I	TTAA	2 cut(s)	269, 596
Tru9I	TTAA	2 cut(s)	269, 596
TscAI	CASTG	2 cut(s)	319, 646
TspDTI	ATGAA	4 cut(s)	178, 220, 418, 547
TspGWI	ACGGA	2 cut(s)	376, 736
TspRI	CASTG	2 cut(s)	319, 646
Vha464I	CTTAAG	2 cut(s)	268, 595
VpaK11BI	GGWCC	2 cut(s)	297, 624
XspI	CTAG	1 cut(s)	23
ZraI	GACGTC	5 cut(s)	226, 413, 424, 542, 553
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.