Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013245.1

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

41843 .. 43478

Gene Structure 1636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013245.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgtcaaacccaaaacccagactagtctgtagcatcggcgacgtccatggcttccacaccaagctccaaaatctctggtccaatcttgaaatctccatcccttcttcagacttcgccaccgccttcgtcatcttcctcggcgactactgcagccgcggcccggacaccaacgaagtccttgacttattcgtcgctctcccctccagatacccacatcagaaagacatcttcattgccggaaaccatgacttcgccttcgccgccttgttgagagtcctgcctctgccaccggactggtccaagttccacgaggggtggaaggagttcgaggacaaggaggagagagaaaaagatctagagacagatctggagacagagaaagggcaagaagatgtaaaaagaaagagagaaaagaagataacaaagaggaaatcggagaaagatatcatcacctggggcgccatcaacatgatggacgccatccatggcgttatggatagggactgcgccagtcctaggctggtggtggatggaggcggtgccctaggcagcagcgtcagtcacacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

189

Amino Acids

21.34

Weight (kDa)

5.65

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AatII	GACGTC	1 cut(s)	45
AccB1I	GGYRCC	2 cut(s)	458, 539
AccII	CGCG	1 cut(s)	156
AciI	CCGC	5 cut(s)	120, 154, 156, 261, 537
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	3 cut(s)	42, 459, 477
AfiI	CCNNNNNNNGG	2 cut(s)	160, 516
AgsI	TTSAA	1 cut(s)	89
AhlI	ACTAGT	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	452
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	353, 365
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	3 cut(s)	150, 549, 552
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	323
AspA2I	CCTAGG	2 cut(s)	515, 544
AspLEI	GCGC	2 cut(s)	461, 509
AspS9I	GGNCC	3 cut(s)	78, 158, 297
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	2 cut(s)	78, 297
AvrII	CCTAGG	2 cut(s)	515, 544
BaeGI	GKGCMC	1 cut(s)	544
BanI	GGYRCC	2 cut(s)	458, 539
BauI	CACGAG	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	162, 561, 564
BccI	CCATC	5 cut(s)	104, 466, 470, 488, 524
BciT130I	CCWGG	1 cut(s)	454
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	353, 365
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	4 cut(s)	23, 356, 516, 545
BfmI	CTRYAG	2 cut(s)	28, 148
BfoI	RGCGCY	1 cut(s)	462
BglII	AGATCT	2 cut(s)	352, 364
BisI	GCNGC	6 cut(s)	151, 154, 157, 261, 550, 553
BlnI	CCTAGG	2 cut(s)	515, 544
BlsI	GCNGC	6 cut(s)	152, 155, 158, 262, 551, 554
Bme1390I	CCNGG	2 cut(s)	161, 454
Bme18I	GGWCC	2 cut(s)	78, 297
BmgT120I	GGNCC	3 cut(s)	78, 158, 297
BmiI	GGNNCC	2 cut(s)	460, 541
BmrFI	CCNGG	2 cut(s)	161, 454
BmsI	GCATC	1 cut(s)	42
BpmI	CTGGAG	2 cut(s)	187, 389
BpuMI	CCSGG	1 cut(s)	161
BsaHI	GRCGYC	3 cut(s)	42, 459, 477
BsaJI	CCNNGG	7 cut(s)	46, 136, 154, 453, 484, 515, 544
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 516
Bse1I	ACTGG	2 cut(s)	299, 510
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	454
BseDI	CCNNGG	7 cut(s)	46, 136, 154, 453, 484, 515, 544
BseGI	GGATG	3 cut(s)	96, 480, 535
BseLI	CCNNNNNNNGG	2 cut(s)	160, 516
BseMI	GCAATG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	299, 510
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	544
BseXI	GCAGC	3 cut(s)	162, 561, 564
Bsh1236I	CGCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	159
BshNI	GGYRCC	2 cut(s)	458, 539
BsiSI	CCGG	3 cut(s)	161, 237, 290
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	160, 516
BsmAI	GTCTC	2 cut(s)	353, 365
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	2 cut(s)	352, 364
Bsp19I	CCATGG	2 cut(s)	46, 484
BspACI	CCGC	5 cut(s)	120, 154, 156, 261, 537
BspANI	GGCC	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	460, 541
BspMAI	CTGCAG	1 cut(s)	152
BspT107I	GGYRCC	2 cut(s)	458, 539
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	299, 510
BssECI	CCNNGG	7 cut(s)	46, 136, 154, 453, 484, 515, 544
BssMI	GATC	2 cut(s)	352, 364
BssNI	GRCGYC	3 cut(s)	42, 459, 477
BssSI	CACGAG	1 cut(s)	308
BssT1I	CCWWGG	4 cut(s)	46, 484, 515, 544
Bst2BI	CACGAG	1 cut(s)	308
Bst2UI	CCWGG	1 cut(s)	454
BstACI	GRCGYC	3 cut(s)	42, 459, 477
BstDEI	CTNAG	1 cut(s)	567
BstDSI	CCRYGG	3 cut(s)	46, 154, 484
BstF5I	GGATG	3 cut(s)	96, 480, 535
BstFNI	CGCG	1 cut(s)	156
BstH2I	RGCGCY	1 cut(s)	462
BstHHI	GCGC	2 cut(s)	461, 509
BstKTI	GATC	2 cut(s)	355, 367
BstMAI	GTCTC	2 cut(s)	353, 365
BstMBI	GATC	2 cut(s)	352, 364
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 156, 260
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	2 cut(s)	159, 452
BstSFI	CTRYAG	2 cut(s)	28, 148
BstSLI	GKGCMC	1 cut(s)	544
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	162, 561, 564
BstX2I	RGATCY	2 cut(s)	352, 364
BstXI	CCANNNNNNTGG	1 cut(s)	294
BstYI	RGATCY	2 cut(s)	352, 364
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	3 cut(s)	46, 154, 484
BtsCI	GGATG	3 cut(s)	96, 480, 535
CfoI	GCGC	2 cut(s)	461, 509
Cfr13I	GGNCC	3 cut(s)	78, 158, 297
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	2 cut(s)	485, 544
CviAII	CATG	4 cut(s)	47, 245, 469, 485
CviJI	RGCY	5 cut(s)	51, 64, 153, 159, 520
CviKI_1	RGCY	5 cut(s)	51, 64, 153, 159, 520
DdeI	CTNAG	1 cut(s)	567
DinI	GGCGCC	1 cut(s)	460
DpnI	GATC	2 cut(s)	354, 366
DpnII	GATC	2 cut(s)	352, 364
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eco130I	CCWWGG	4 cut(s)	46, 484, 515, 544
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	78, 297
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	445
EcoT14I	CCWWGG	4 cut(s)	46, 484, 515, 544
EgeI	GGCGCC	1 cut(s)	460
EheI	GGCGCC	1 cut(s)	460
ErhI	CCWWGG	4 cut(s)	46, 484, 515, 544
FaeI	CATG	4 cut(s)	50, 248, 472, 488
FaiI	YATR	5 cut(s)	48, 246, 470, 486, 494
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	4 cut(s)	46, 244, 468, 484
Fnu4HI	GCNGC	6 cut(s)	151, 154, 157, 261, 550, 553
FokI	GGATG	3 cut(s)	83, 467, 542
Fsp4HI	GCNGC	6 cut(s)	151, 154, 157, 261, 550, 553
FspBI	CTAG	4 cut(s)	23, 356, 516, 545
GlaI	GCGC	2 cut(s)	460, 508
GluI	GCNGC	6 cut(s)	151, 154, 157, 261, 550, 553
GsuI	CTGGAG	2 cut(s)	187, 389
HaeII	RGCGCY	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	3 cut(s)	161, 237, 290
HgaI	GACGC	2 cut(s)	485, 544
HhaI	GCGC	2 cut(s)	461, 509
Hin1I	GRCGYC	3 cut(s)	42, 459, 477
Hin1II	CATG	4 cut(s)	50, 248, 472, 488
Hin6I	GCGC	2 cut(s)	459, 507
HinP1I	GCGC	2 cut(s)	459, 507
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	3 cut(s)	161, 237, 290
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	109, 219, 436
Hpy188III	TCNNGA	4 cut(s)	86, 204, 356, 368
Hpy99I	CGWCG	2 cut(s)	44, 194
HpyAV	CCTTC	4 cut(s)	111, 133, 265, 313
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 156, 260
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	1 cut(s)	42
Hsp92I	GRCGYC	3 cut(s)	42, 459, 477
Hsp92II	CATG	4 cut(s)	50, 248, 472, 488
HspAI	GCGC	2 cut(s)	459, 507
KasI	GGCGCC	1 cut(s)	458
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	2 cut(s)	352, 364
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	3 cut(s)	162, 561, 564
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	4 cut(s)	23, 356, 516, 545
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	560
MalI	GATC	2 cut(s)	354, 366
MboI	GATC	2 cut(s)	352, 364
MboII	GAAGA	5 cut(s)	96, 124, 220, 401, 427
MflI	RGATCY	2 cut(s)	352, 364
MhlI	GDGCHC	1 cut(s)	544
Mly113I	GGCGCC	1 cut(s)	459
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	8 cut(s)	146, 211, 291, 304, 322, 331, 420, 527
MroXI	GAANNNNTTC	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	467
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	3 cut(s)	161, 237, 290
MspR9I	CCNGG	2 cut(s)	161, 454
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	147, 156, 260
NarI	GGCGCC	1 cut(s)	459
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	2 cut(s)	46, 484
NdeII	GATC	2 cut(s)	352, 364
NlaIII	CATG	4 cut(s)	50, 248, 472, 488
NlaIV	GGNNCC	2 cut(s)	460, 541
NmeAIII	GCCGAG	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	323
PkrI	GCNGC	6 cut(s)	152, 155, 158, 262, 551, 554
PleI	GAGTC	1 cut(s)	281
PluTI	GGCGCC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	281
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	2 cut(s)	460, 541
PspPI	GGNCC	3 cut(s)	78, 158, 297
PstI	CTGCAG	1 cut(s)	152
PsuI	RGATCY	2 cut(s)	352, 364
RseI	CAYNNNNRTG	1 cut(s)	467
SacII	CCGCGG	1 cut(s)	157
SatI	GCNGC	6 cut(s)	151, 154, 157, 261, 550, 553
Sau3AI	GATC	2 cut(s)	352, 364
Sau96I	GGNCC	3 cut(s)	78, 158, 297
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	161, 454
SduI	GDGCHC	1 cut(s)	544
SetI	ASST	3 cut(s)	45, 66, 455
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	2 cut(s)	28, 148
SfoI	GGCGCC	1 cut(s)	460
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SinI	GGWCC	2 cut(s)	78, 297
SmiMI	CAYNNNNRTG	1 cut(s)	467
SpeI	ACTAGT	1 cut(s)	22
SsiI	CCGC	5 cut(s)	120, 154, 156, 261, 537
SspDI	GGCGCC	1 cut(s)	458
SspMI	CTAG	4 cut(s)	23, 356, 516, 545
StyD4I	CCNGG	2 cut(s)	159, 452
StyI	CCWWGG	4 cut(s)	46, 484, 515, 544
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	327
TauI	GCSGC	3 cut(s)	156, 159, 263
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	3 cut(s)	150, 549, 552
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	78, 297
XbaI	TCTAGA	1 cut(s)	355
XcmI	CCANNNNNNNNNTGG	2 cut(s)	469, 517
XmaJI	CCTAGG	2 cut(s)	515, 544
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	4 cut(s)	23, 356, 516, 545
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.