Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Forward (+)

30550265 .. 30554924

Gene Structure 4660 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG274200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTCAGACCCAAAACCCAGACTAGTTTGTTGCATCGGTGACGTCCACGAATTCCACACCAAGCTCCAAAATCTCTGGTCCAATCTCGAAATCTCCATTCCTTCTTCAGACTTCGCCACCGCCCTCGTTATCTTCCTTGGTGACTACTACGGTCGCGGCCCAAACACCAACGAAGTCCTTGACTTCGTTGTTCTCCCCTCCATATACCCACATCAGAAAGACGTCTTCATCGCCGGAAACCACGGCTTCGCCTTCGCCGCCTTCTTGAGAGTCCTGCCTCCGCCGCCGGATGGGTCGGAGTTCTGCGAGGGGTGGAAGGAGTTCGAGGACATTTGGTTGATTTTGAGTGATTTGTGCTTGGATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

122

Amino Acids

13.74

Weight (kDa)

4.49

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	9 - 98	1.3e-08	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	45, 225
AccII	CGCG	1 cut(s)	156
AciI	CCGC	5 cut(s)	120, 156, 258, 281, 284
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	2 cut(s)	42, 222
AfiI	CCNNNNNNNGG	1 cut(s)	290
AhlI	ACTAGT	1 cut(s)	22
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AoxI	GGCC	1 cut(s)	157
ApoI	RAATTY	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	78, 158
AsuHPI	GGTGA	2 cut(s)	50, 152
AvaII	GGWCC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	217
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	259
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	365
BisI	GCNGC	3 cut(s)	157, 258, 284
BlsI	GCNGC	3 cut(s)	158, 259, 285
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	2 cut(s)	78, 158
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	217
BpuEI	CTTGAG	1 cut(s)	286
BsaHI	GRCGYC	2 cut(s)	42, 222
BsaJI	CCNNGG	2 cut(s)	136, 241
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
BseDI	CCNNGG	2 cut(s)	136, 241
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	234, 287
BslI	CCNNNNNNNGG	1 cut(s)	290
BsnI	GGCC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	361
BspACI	CCGC	5 cut(s)	120, 156, 258, 281, 284
BspANI	GGCC	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	156
BssECI	CCNNGG	2 cut(s)	136, 241
BssMI	GATC	1 cut(s)	361
BssNI	GRCGYC	2 cut(s)	42, 222
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	2 cut(s)	42, 222
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	1 cut(s)	364
BstMBI	GATC	1 cut(s)	361
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 283
BstSFI	CTRYAG	1 cut(s)	365
BstUI	CGCG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	241
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	78, 158
CviJI	RGCY	3 cut(s)	64, 159, 246
CviKI_1	RGCY	3 cut(s)	64, 159, 246
DpnI	GATC	1 cut(s)	363
DpnII	GATC	1 cut(s)	361
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaiI	YATR	2 cut(s)	203, 205
Fnu4HI	GCNGC	3 cut(s)	157, 258, 284
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	157, 258, 284
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	3 cut(s)	157, 258, 284
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	2 cut(s)	234, 287
Hin1I	GRCGYC	2 cut(s)	42, 222
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	2 cut(s)	234, 287
HphI	GGTGA	2 cut(s)	50, 152
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	7, 109, 216, 298
Hpy188III	TCNNGA	2 cut(s)	86, 265
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	4 cut(s)	111, 262, 271, 310
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	42, 222
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 283
HpySE526I	ACGT	2 cut(s)	42, 222
Hsp92I	GRCGYC	2 cut(s)	42, 222
Kzo9I	GATC	1 cut(s)	361
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	5 cut(s)	31, 61, 247, 287, 300
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	2 cut(s)	42, 222
MaeIII	GTNAC	2 cut(s)	38, 140
MalI	GATC	1 cut(s)	363
MboI	GATC	1 cut(s)	361
MboII	GAAGA	3 cut(s)	96, 124, 217
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	5 cut(s)	134, 208, 288, 301, 319
MroXI	GAANNNNTTC	1 cut(s)	320
MspI	CCGG	2 cut(s)	234, 287
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	257, 283
NdeII	GATC	1 cut(s)	361
NmuCI	GTSAC	2 cut(s)	38, 140
PdmI	GAANNNNTTC	1 cut(s)	320
PkrI	GCNGC	3 cut(s)	158, 259, 285
PleI	GAGTC	1 cut(s)	278
PpsI	GAGTC	1 cut(s)	278
PspPI	GGNCC	2 cut(s)	78, 158
PsuI	RGATCY	1 cut(s)	361
SatI	GCNGC	3 cut(s)	157, 258, 284
Sau3AI	GATC	1 cut(s)	361
Sau96I	GGNCC	2 cut(s)	78, 158
SchI	GAGTC	1 cut(s)	279
SetI	ASST	3 cut(s)	45, 66, 225
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	265
SmoI	CTYRAG	1 cut(s)	265
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	5 cut(s)	120, 156, 258, 281, 284
SspMI	CTAG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	45, 225
TaqI	TCGA	2 cut(s)	87, 324
TasI	AATT	1 cut(s)	50
TauI	GCSGC	3 cut(s)	159, 260, 286
TseFI	GTSAC	2 cut(s)	38, 140
Tsp45I	GTSAC	2 cut(s)	38, 140
TspDTI	ATGAA	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	1 cut(s)	23
ZraI	GACGTC	2 cut(s)	43, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.