Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000617.1

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

168169 .. 168552

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000617.1_g000041.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgtcagacccaaaacccagactagtctgttgcatcggtgacgtccacggcttccacaccaagctccaaaatctctggtccaatctcgaaatctccattctttcttcagacttcgacaccgccctcatcatcttccttggtgactactgcggtctcggcccagacaccaacgaagtccttgacttcttcgtcactctctcctctagatacccacgtcagaaagacgtcttcatcgccggaaaccacgacttcgccttcgccgccttcttgagatcctgcctcggccgccggatgggtccgagttctgcgaggggtggaaggagttcgaggacagtgaagagagagaaaaagatctggagacagataaagggcaagaagaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

9.78

Isoelectric Point (pI)

41.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AatII	GACGTC	2 cut(s)	45, 228
AciI	CCGC	4 cut(s)	120, 150, 261, 286
AclWI	GGATC	1 cut(s)	267
AcoI	YGGCCR	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	2 cut(s)	42, 225
AfiI	CCNNNNNNNGG	1 cut(s)	292
AhlI	ACTAGT	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	215
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	158, 352
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	157, 283
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	322
AspS9I	GGNCC	3 cut(s)	78, 158, 296
AsuHPI	GGTGA	2 cut(s)	50, 152
AvaII	GGWCC	2 cut(s)	78, 296
BaeI	ACNNNNGTAYC	2 cut(s)	199, 232
BbsI	GAAGAC	1 cut(s)	220
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	158, 352
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	2 cut(s)	23, 204
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	2 cut(s)	261, 286
BlsI	GCNGC	2 cut(s)	262, 287
Bme18I	GGWCC	2 cut(s)	78, 296
BmgBI	CACGTC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	78, 158, 296
BmiI	GGNNCC	1 cut(s)	297
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	289
BsaHI	GRCGYC	2 cut(s)	42, 225
BsaI	GGTCTC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	46, 136, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
BseDI	CCNNGG	3 cut(s)	46, 136, 280
BseGI	GGATG	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	190
BseX3I	CGGCCG	1 cut(s)	283
Bsh1285I	CGRYCG	1 cut(s)	286
BshFI	GGCC	2 cut(s)	159, 285
BsiEI	CGRYCG	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	237, 289
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	158, 352
BsnI	GGCC	2 cut(s)	159, 285
Bso31I	GGTCTC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	272, 351
BspACI	CCGC	4 cut(s)	120, 150, 261, 286
BspANI	GGCC	2 cut(s)	159, 285
BspLI	GGNNCC	1 cut(s)	297
BspPI	GGATC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	46, 136, 280
BssMI	GATC	2 cut(s)	272, 351
BssNI	GRCGYC	2 cut(s)	42, 225
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	332
BstACI	GRCGYC	2 cut(s)	42, 225
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	2 cut(s)	275, 354
BstMAI	GTCTC	2 cut(s)	158, 352
BstMBI	GATC	2 cut(s)	272, 351
BstMCI	CGRYCG	1 cut(s)	286
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 260, 285
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	2 cut(s)	272, 351
BstYI	RGATCY	2 cut(s)	272, 351
BstZI	CGGCCG	1 cut(s)	283
BsuRI	GGCC	2 cut(s)	159, 285
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	339
Cfr13I	GGNCC	3 cut(s)	78, 158, 296
CviJI	RGCY	4 cut(s)	51, 64, 159, 285
CviKI_1	RGCY	4 cut(s)	51, 64, 159, 285
DpnI	GATC	2 cut(s)	274, 353
DpnII	GATC	2 cut(s)	272, 351
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	1 cut(s)	283
EagI	CGGCCG	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	332
EarI	CTCTTC	1 cut(s)	332
EclXI	CGGCCG	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	78, 296
Eco52I	CGGCCG	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	261, 286
FokI	GGATG	1 cut(s)	304
Fsp4HI	GCNGC	2 cut(s)	261, 286
FspBI	CTAG	2 cut(s)	23, 204
GluI	GCNGC	2 cut(s)	261, 286
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	2 cut(s)	159, 285
HapII	CCGG	2 cut(s)	237, 289
Hin1I	GRCGYC	2 cut(s)	42, 225
HpaII	CCGG	2 cut(s)	237, 289
HphI	GGTGA	2 cut(s)	50, 152
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	4 cut(s)	7, 109, 219, 300
Hpy188III	TCNNGA	4 cut(s)	86, 204, 268, 355
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	265, 274, 312
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	3 cut(s)	42, 214, 225
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 260, 285
HpySE526I	ACGT	3 cut(s)	42, 214, 225
Hsp92I	GRCGYC	2 cut(s)	42, 225
Kzo9I	GATC	2 cut(s)	272, 351
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	31, 61, 174, 250, 289, 302, 340
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	2 cut(s)	23, 204
MaeII	ACGT	3 cut(s)	42, 214, 225
MaeIII	GTNAC	3 cut(s)	38, 140, 190
MalI	GATC	2 cut(s)	274, 353
MboI	GATC	2 cut(s)	272, 351
MboII	GAAGA	5 cut(s)	96, 124, 178, 220, 349
MflI	RGATCY	2 cut(s)	272, 351
MnlI	CCTC	5 cut(s)	134, 211, 290, 303, 321
MroXI	GAANNNNTTC	1 cut(s)	322
MspI	CCGG	2 cut(s)	237, 289
MwoI	GCNNNNNNNGC	3 cut(s)	156, 260, 285
NdeII	GATC	2 cut(s)	272, 351
NlaIV	GGNNCC	1 cut(s)	297
NmeAIII	GCCGAG	2 cut(s)	135, 261
NmuCI	GTSAC	3 cut(s)	38, 140, 190
PdmI	GAANNNNTTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	262, 287
PspN4I	GGNNCC	1 cut(s)	297
PspPI	GGNCC	3 cut(s)	78, 158, 296
PsuI	RGATCY	2 cut(s)	272, 351
SatI	GCNGC	2 cut(s)	261, 286
Sau3AI	GATC	2 cut(s)	272, 351
Sau96I	GGNCC	3 cut(s)	78, 158, 296
SetI	ASST	4 cut(s)	45, 66, 217, 228
SfaNI	GCATC	1 cut(s)	42
SinI	GGWCC	2 cut(s)	78, 296
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SpeI	ACTAGT	1 cut(s)	22
SsiI	CCGC	4 cut(s)	120, 150, 261, 286
SspMI	CTAG	2 cut(s)	23, 204
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	3 cut(s)	45, 217, 228
TaqI	TCGA	3 cut(s)	87, 114, 326
TauI	GCSGC	2 cut(s)	263, 288
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	3 cut(s)	38, 140, 190
Tsp45I	GTSAC	3 cut(s)	38, 140, 190
TspDTI	ATGAA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	2 cut(s)	78, 296
XbaI	TCTAGA	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	322
XspI	CTAG	2 cut(s)	23, 204
ZraI	GACGTC	2 cut(s)	43, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.