Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

2053479 .. 2055897

Gene Structure 2419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1020700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGTCAGACCCAAAAGCAAAACCCAGAATAGTGTGCTGCATCGGCGACACCCATGGCTTCCACACCAAGCTCCAAAACCTCTGGTCCAATCTCCAATCCGCCATCGACCCATCAGATTTCTCCACCGCCCTCATCATTTTCCTCGGCGATTACTGCGACCGCGGCCTGGACACCAAAAAAGTCATCGACTTTCTCGTCTCCCTGCCCTCCAGGTACCCGAATCAGAAGCACGTCTTCCTCACCGGCAACCACGACCTGGCCTTCGCCGCCTTCGTGGGCGTCCTGCCGCCGCCTCCTGACGGGTCGGAGTTTTCCGAGGGGTGGAAGGAGTATGCGGATAGCGAGGATAGAGAAGGGTGGTTTAAGGGAGATGGGTACGAGAGGATGCACTTGCAGGGGAGGAGATGGGGTGGCAAGATCAAGGCTAAGTTTAATGCGGCTAAAGGGACAGAGTACAAAGGGTCAATTTATGATGCTGGGCCCACATTTGAATCCTATGGGGTCCCACATGGTTCTGCTGATTTGGTTAAGGCAGTTCCTGATGAACACAAGAAGTTTCTTGCTGATATGGTTTGGGTCCATGAAGAGGATGATGTCTGCATAGAGACTGCAGATGGAATCAAACACTGTAGATTGATTGCTGTCCATGCTGGTTTAGAGAAAGATAAAGATGTCAAACAGCAGTTGGCGTTTTTGCGAGCCAGAGACACCCGGGTGCCTAAGATACAGGCTCTGAGTGGGAGGAAGAATGTATGGGATATACCAAAGGAACTGACAGAGAAACCAACTGTTGTTGTAAGCGGTCATCACGGGAAACTTAACATTGAAGGCCTCAGACTGATCATCGATGAAGGCGGTGGTATGGCGGAAAGACCAGTGGCTGCAGTTGTGCTCCCCTCTGTGAAAATAGTCCGGGATACAGATGCGTTGACCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

313

Amino Acids

34.59

Weight (kDa)

6.31

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	12 - 123	4.6e-12	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	2 cut(s)	213, 715
AccB7I	CCANNNNNTGG	1 cut(s)	256
AccII	CGCG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	3 cut(s)	215, 377, 455
AfiI	CCNNNNNNNGG	5 cut(s)	166, 256, 299, 321, 586
AgsI	TTSAA	2 cut(s)	491, 827
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	3 cut(s)	165, 209, 255
AleI	CACNNNNGTG	1 cut(s)	713
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	1 cut(s)	894
Alw26I	GTCTC	3 cut(s)	202, 599, 699
AlwNI	CAGNNNCTG	3 cut(s)	539, 733, 881
Ama87I	CYCGRG	1 cut(s)	711
AoxI	GGCC	4 cut(s)	163, 258, 479, 829
ApaI	GGGCCC	1 cut(s)	483
ApeKI	GCWGC	2 cut(s)	36, 881
ArsI	GACNNNNNNTTYG	2 cut(s)	245, 277
Asp718I	GGTACC	1 cut(s)	213
AspS9I	GGNCC	5 cut(s)	84, 479, 480, 502, 577
AsuC2I	CCSGG	3 cut(s)	712, 713, 914
AsuHPI	GGTGA	1 cut(s)	232
AvaI	CYCGRG	1 cut(s)	711
AvaII	GGWCC	3 cut(s)	84, 502, 577
BaeGI	GKGCMC	1 cut(s)	483
BanI	GGYRCC	2 cut(s)	213, 715
BanII	GRGCYC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	1 cut(s)	894
BbvI	GCAGC	2 cut(s)	23, 868
BccI	CCATC	5 cut(s)	110, 118, 365, 399, 608
BciT130I	CCWGG	3 cut(s)	167, 211, 257
BciVI	GTATCC	1 cut(s)	910
BclI	TGATCA	1 cut(s)	840
BcnI	CCSGG	3 cut(s)	712, 713, 914
BcoDI	GTCTC	3 cut(s)	202, 599, 699
BfaI	CTAG	1 cut(s)	937
BfmI	CTRYAG	3 cut(s)	609, 628, 882
BfuI	GTATCC	1 cut(s)	910
BisI	GCNGC	7 cut(s)	37, 163, 267, 287, 290, 438, 882
BlsI	GCNGC	7 cut(s)	38, 164, 268, 288, 291, 439, 883
Bme1390I	CCNGG	6 cut(s)	167, 211, 257, 712, 713, 914
Bme18I	GGWCC	3 cut(s)	84, 502, 577
BmeT110I	CYCGRG	1 cut(s)	711
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	5 cut(s)	84, 479, 480, 502, 577
BmiI	GGNNCC	6 cut(s)	215, 481, 503, 504, 578, 717
BmrFI	CCNGG	6 cut(s)	167, 211, 257, 712, 713, 914
BmsI	GCATC	4 cut(s)	48, 375, 463, 913
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	1 cut(s)	193
BpuMI	CCSGG	3 cut(s)	712, 713, 914
Bsa29I	ATCGAT	1 cut(s)	846
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	5 cut(s)	52, 142, 160, 315, 711
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bsc4I	CCNNNNNNNGG	5 cut(s)	166, 256, 299, 321, 586
Bse118I	RCCGGY	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	875
BseBI	CCWGG	3 cut(s)	167, 211, 257
BseCI	ATCGAT	1 cut(s)	846
BseDI	CCNNGG	5 cut(s)	52, 142, 160, 315, 711
BseGI	GGATG	2 cut(s)	390, 595
BseLI	CCNNNNNNNGG	5 cut(s)	166, 256, 299, 321, 586
BseMII	CTCAG	2 cut(s)	725, 847
BseNI	ACTGG	1 cut(s)	875
BseRI	GAGGAG	1 cut(s)	415
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	23, 868
BseYI	CCCAGC	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	162
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	165, 260, 481, 831
BshNI	GGYRCC	2 cut(s)	213, 715
BshVI	ATCGAT	1 cut(s)	846
BsiEI	CGRYCG	1 cut(s)	160
BsiHKAI	GWGCWC	1 cut(s)	894
BsiHKCI	CYCGRG	1 cut(s)	711
BsiSI	CCGG	3 cut(s)	243, 712, 913
BslFI	GGGAC	2 cut(s)	460, 488
BslI	CCNNNNNNNGG	5 cut(s)	166, 256, 299, 321, 586
BsmAI	GTCTC	3 cut(s)	202, 599, 699
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	460, 488
BsnI	GGCC	4 cut(s)	165, 260, 481, 831
BsoBI	CYCGRG	1 cut(s)	711
Bsp120I	GGGCCC	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	483, 894
Bsp143I	GATC	2 cut(s)	417, 840
Bsp19I	CCATGG	1 cut(s)	52
BspANI	GGCC	4 cut(s)	165, 260, 481, 831
BspCNI	CTCAG	2 cut(s)	726, 846
BspDI	ATCGAT	1 cut(s)	846
BspFNI	CGCG	1 cut(s)	162
BspLI	GGNNCC	6 cut(s)	215, 481, 503, 504, 578, 717
BspMAI	CTGCAG	2 cut(s)	613, 886
BspT107I	GGYRCC	2 cut(s)	213, 715
BsrFI	RCCGGY	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	875
BssAI	RCCGGY	1 cut(s)	242
BssECI	CCNNGG	5 cut(s)	52, 142, 160, 315, 711
BssMI	GATC	2 cut(s)	417, 840
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	52
Bst2UI	CCWGG	3 cut(s)	167, 211, 257
Bst4CI	ACNGT	2 cut(s)	629, 790
Bst6I	CTCTTC	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	699
BstDEI	CTNAG	4 cut(s)	426, 720, 734, 833
BstDSI	CCRYGG	2 cut(s)	52, 160
BstF5I	GGATG	2 cut(s)	390, 595
BstFNI	CGCG	1 cut(s)	162
BstKTI	GATC	2 cut(s)	420, 843
BstMAI	GTCTC	3 cut(s)	202, 599, 699
BstMBI	GATC	2 cut(s)	417, 840
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 153, 162, 266, 647
BstNI	CCWGG	3 cut(s)	167, 211, 257
BstSCI	CCNGG	6 cut(s)	165, 209, 255, 710, 711, 912
BstSFI	CTRYAG	3 cut(s)	609, 628, 882
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	23, 868
BstV2I	GAAGAC	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	846
BsuI	GTATCC	1 cut(s)	910
BsuRI	GGCC	4 cut(s)	165, 260, 481, 831
BsuTUI	ATCGAT	1 cut(s)	846
BtgI	CCRYGG	2 cut(s)	52, 160
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	390, 595
BtsIMutI	CAGTG	2 cut(s)	625, 882
Cac8I	GCNNGC	1 cut(s)	699
CaiI	CAGNNNCTG	3 cut(s)	539, 733, 881
Cfr10I	RCCGGY	1 cut(s)	242
Cfr13I	GGNCC	5 cut(s)	84, 479, 480, 502, 577
Cfr42I	CCGCGG	1 cut(s)	163
Cfr9I	CCCGGG	1 cut(s)	711
ClaI	ATCGAT	1 cut(s)	846
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	214, 376, 454
CviAII	CATG	4 cut(s)	53, 509, 581, 647
CviQI	GTAC	3 cut(s)	214, 376, 454
DdeI	CTNAG	4 cut(s)	426, 720, 734, 833
DpnI	GATC	2 cut(s)	419, 842
DpnII	GATC	2 cut(s)	417, 840
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	579
EarI	CTCTTC	1 cut(s)	579
EciI	GGCGGA	2 cut(s)	88, 881
Eco130I	CCWWGG	1 cut(s)	52
Eco147I	AGGCCT	1 cut(s)	831
Eco24I	GRGCYC	1 cut(s)	483
Eco47I	GGWCC	3 cut(s)	84, 502, 577
Eco88I	CYCGRG	1 cut(s)	711
EcoO109I	RGGNCCY	1 cut(s)	502
EcoRII	CCWGG	3 cut(s)	165, 209, 255
EcoT14I	CCWWGG	1 cut(s)	52
EcoT38I	GRGCYC	1 cut(s)	483
ErhI	CCWWGG	1 cut(s)	52
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	4 cut(s)	56, 512, 584, 650
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	2 cut(s)	460, 488
FatI	CATG	4 cut(s)	52, 508, 580, 646
FbaI	TGATCA	1 cut(s)	840
Fnu4HI	GCNGC	7 cut(s)	37, 163, 267, 287, 290, 438, 882
FokI	GGATG	2 cut(s)	397, 602
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	7 cut(s)	37, 163, 267, 287, 290, 438, 882
FspBI	CTAG	1 cut(s)	937
GluI	GCNGC	7 cut(s)	37, 163, 267, 287, 290, 438, 882
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	4 cut(s)	165, 260, 481, 831
HapII	CCGG	3 cut(s)	243, 712, 913
HgaI	GACGC	1 cut(s)	268
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	56, 512, 584, 650
HincII	GTYRAC	1 cut(s)	930
HindII	GTYRAC	1 cut(s)	930
HinfI	GANTC	3 cut(s)	220, 491, 618
HpaII	CCGG	3 cut(s)	243, 712, 913
HphI	GGTGA	1 cut(s)	232
Hpy166II	GTNNAC	1 cut(s)	930
Hpy188I	TCNGA	7 cut(s)	7, 115, 225, 307, 316, 735, 836
Hpy188III	TCNNGA	2 cut(s)	296, 539
Hpy8I	GTNNAC	1 cut(s)	930
HpyAV	CCTTC	6 cut(s)	271, 280, 319, 347, 821, 845
HpyCH4III	ACNGT	2 cut(s)	629, 790
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	6 cut(s)	39, 388, 394, 600, 611, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 153, 162, 266, 647
HpyF3I	CTNAG	4 cut(s)	426, 720, 734, 833
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	56, 512, 584, 650
KflI	GGGWCCC	1 cut(s)	502
KpnI	GGTACC	1 cut(s)	217
Ksp22I	TGATCA	1 cut(s)	840
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	417, 840
LmnI	GCTCC	2 cut(s)	75, 897
Lsp1109I	GCAGC	2 cut(s)	23, 868
LweI	GCATC	4 cut(s)	48, 375, 463, 913
MaeI	CTAG	1 cut(s)	937
MaeII	ACGT	1 cut(s)	231
MalI	GATC	2 cut(s)	419, 842
MboI	GATC	2 cut(s)	417, 840
MboII	GAAGA	3 cut(s)	226, 596, 757
MhlI	GDGCHC	2 cut(s)	483, 894
MluCI	AATT	1 cut(s)	465
MmeI	TCCRAC	1 cut(s)	285
MseI	TTAA	4 cut(s)	363, 432, 528, 819
MslI	CAYNNNNRTG	1 cut(s)	713
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	3 cut(s)	243, 712, 913
MspR9I	CCNGG	6 cut(s)	167, 211, 257, 712, 713, 914
MvaI	CCWGG	3 cut(s)	167, 211, 257
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	5 cut(s)	42, 153, 162, 266, 647
NciI	CCSGG	3 cut(s)	712, 713, 914
NcoI	CCATGG	1 cut(s)	52
NdeII	GATC	2 cut(s)	417, 840
NlaIII	CATG	4 cut(s)	56, 512, 584, 650
NlaIV	GGNNCC	6 cut(s)	215, 481, 503, 504, 578, 717
NmeAIII	GCCGAG	1 cut(s)	123
OliI	CACNNNNGTG	1 cut(s)	713
PceI	AGGCCT	1 cut(s)	831
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 270
PfeI	GAWTC	3 cut(s)	220, 491, 618
PflMI	CCANNNNNTGG	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	912
PkrI	GCNGC	7 cut(s)	38, 164, 268, 288, 291, 439, 883
PpuMI	RGGWCCY	1 cut(s)	502
Psp5II	RGGWCCY	1 cut(s)	502
Psp6I	CCWGG	3 cut(s)	165, 209, 255
PspFI	CCCAGC	1 cut(s)	476
PspGI	CCWGG	3 cut(s)	165, 209, 255
PspN4I	GGNNCC	6 cut(s)	215, 481, 503, 504, 578, 717
PspOMI	GGGCCC	1 cut(s)	479
PspPI	GGNCC	5 cut(s)	84, 479, 480, 502, 577
PspPPI	RGGWCCY	1 cut(s)	502
PstI	CTGCAG	2 cut(s)	613, 886
PstNI	CAGNNNCTG	3 cut(s)	539, 733, 881
RsaI	GTAC	3 cut(s)	215, 377, 455
RsaNI	GTAC	3 cut(s)	214, 376, 454
RseI	CAYNNNNRTG	1 cut(s)	713
SacII	CCGCGG	1 cut(s)	163
SaqAI	TTAA	4 cut(s)	363, 432, 528, 819
SatI	GCNGC	7 cut(s)	37, 163, 267, 287, 290, 438, 882
Sau3AI	GATC	2 cut(s)	417, 840
Sau96I	GGNCC	5 cut(s)	84, 479, 480, 502, 577
ScrFI	CCNGG	6 cut(s)	167, 211, 257, 712, 713, 914
SduI	GDGCHC	2 cut(s)	483, 894
SetI	ASST	5 cut(s)	72, 81, 215, 234, 258
SfaNI	GCATC	4 cut(s)	48, 375, 463, 913
SfcI	CTRYAG	3 cut(s)	609, 628, 882
Sfr303I	CCGCGG	1 cut(s)	163
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	3 cut(s)	84, 502, 577
SmaI	CCCGGG	1 cut(s)	713
SmiMI	CAYNNNNRTG	1 cut(s)	713
Sse9I	AATT	1 cut(s)	465
SseBI	AGGCCT	1 cut(s)	831
SspMI	CTAG	1 cut(s)	937
StuI	AGGCCT	1 cut(s)	831
StyD4I	CCNGG	6 cut(s)	165, 209, 255, 710, 711, 912
StyI	CCWWGG	1 cut(s)	52
TaaI	ACNGT	2 cut(s)	629, 790
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	3 cut(s)	105, 186, 846
TasI	AATT	1 cut(s)	465
TatI	WGTACW	1 cut(s)	453
TauI	GCSGC	5 cut(s)	165, 269, 289, 292, 440
TfiI	GAWTC	3 cut(s)	220, 491, 618
Tru1I	TTAA	4 cut(s)	363, 432, 528, 819
Tru9I	TTAA	4 cut(s)	363, 432, 528, 819
TscAI	CASTG	2 cut(s)	632, 882
TseI	GCWGC	2 cut(s)	36, 881
TspDTI	ATGAA	3 cut(s)	558, 597, 864
TspMI	CCCGGG	1 cut(s)	711
TspRI	CASTG	2 cut(s)	632, 882
Van91I	CCANNNNNTGG	1 cut(s)	256
VpaK11BI	GGWCC	3 cut(s)	84, 502, 577
XmaI	CCCGGG	1 cut(s)	711
XspI	CTAG	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.