Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

74495022 .. 74496159

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0556700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGTCGATCCCACTGAATTCACCATGGAGAGGATGCGCAGCAAATTTCCATCAACCTGTCAATGAACGTGCAGCTCAGTCTTTGGTGGAAACTGTTTATAACTTTAATTGTCGTGTTCCAAATCCCCCTCTGGCTGACATCGAGTATAGAAGCAGCAGTGGAGAAGAAGACATACTCCGCCATGTGTTTCGCTGGGATCTTACCCCCTATCAAGAGGTGTTTCAGAATAGCTTCCAAGCGATGCGTCAAGAAAACACTACCAATGAAGTCTACTTCAATCTGGATCACTCGTCCATCATGGCTGTAGGCCTCTTGATTCCCGCCGACCCGCCACCCACGCCTTCGTTAGCACCACCCTTAACAGCGGTTGGCATCCCATCGTCACTGAGACTGTGGAGGAAGTATATCGCTATGAAATATATGCTCCCGGTGGCATTTGGGTTGTTGAAACCCTTGGTGACCGTTACCAGTACCCGGCCCAAGATGAGTTGCATCCACCACGGATGCTCAACATTCGAACGCCAGTATTTGATTATCATAATACAAATAATTACGAGGGCTCCTCTAACCATTAGCATTTGGCAACCCCCTGCAATCTCCAAGCGAGAGGAACGACTAGCCGACAACTCTATCGCCACCAATTGGTATTCCCATGATGTGGCTGACTTTGAGAGTTACATAAATGCTGCATTCCGTTCGTCTCGCGAAAAAGAAGCCTATCTATTCATGAAGAACGAGTATATGCTAATCGACTATGCTCCTGGCAATAATGATGACAAGGTATTGAACGGACCATTTCTTATCTGCGATGGGTTTCCATCCCTCACGGCCACAGCCTTTGCAGAACATGGTATTGTGCCTTTGCGTCTCATAATGGGAATGAAGCCTTCATCTTCTCTGGGAATCTCTATGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

305

Amino Acids

34.41

Weight (kDa)

6.45

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	99
Acc16I	TGCGCA	1 cut(s)	37
AccB7I	CCANNNNNTGG	2 cut(s)	642, 658
AccI	GTMKAC	1 cut(s)	270
AccII	CGCG	1 cut(s)	705
AciI	CCGC	4 cut(s)	178, 321, 329, 365
AclWI	GGATC	2 cut(s)	204, 291
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	2 cut(s)	16, 43
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	4 cut(s)	29, 474, 642, 658
AgsI	TTSAA	3 cut(s)	277, 448, 787
AjnI	CCWGG	1 cut(s)	760
AluBI	AGCT	2 cut(s)	74, 231
AluI	AGCT	2 cut(s)	74, 231
Alw26I	GTCTC	3 cut(s)	382, 705, 872
AlwI	GGATC	2 cut(s)	204, 291
AoxI	GGCC	3 cut(s)	307, 476, 828
ApeKI	GCWGC	4 cut(s)	38, 71, 153, 686
ApoI	RAATTY	2 cut(s)	16, 43
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	477, 791
AsuC2I	CCSGG	2 cut(s)	428, 475
AsuHPI	GGTGA	2 cut(s)	12, 469
AsuII	TTCGAA	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	791
BanII	GRGCYC	1 cut(s)	562
BarI	GAAGNNNNNNTAC	2 cut(s)	156, 188
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	4 cut(s)	50, 83, 165, 673
BccI	CCATC	5 cut(s)	57, 302, 385, 803, 826
BceAI	ACGGC	1 cut(s)	843
BcgI	CGANNNNNNTGC	2 cut(s)	678, 712
BciT130I	CCWGG	1 cut(s)	762
BcnI	CCSGG	2 cut(s)	428, 475
BcoDI	GTCTC	3 cut(s)	382, 705, 872
BfaI	CTAG	1 cut(s)	617
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	4 cut(s)	39, 72, 154, 687
BlsI	GCNGC	4 cut(s)	40, 73, 155, 688
Bme1390I	CCNGG	3 cut(s)	428, 475, 762
Bme18I	GGWCC	1 cut(s)	791
BmgT120I	GGNCC	2 cut(s)	477, 791
BmiI	GGNNCC	1 cut(s)	561
BmrFI	CCNGG	3 cut(s)	428, 475, 762
BmsI	GCATC	5 cut(s)	23, 231, 381, 494, 501
BpiI	GAAGAC	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	547, 579
Bpu14I	TTCGAA	1 cut(s)	516
BpuMI	CCSGG	2 cut(s)	428, 475
BsaJI	CCNNGG	3 cut(s)	23, 453, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	544, 574
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 474, 642, 658
Bse1I	ACTGG	2 cut(s)	468, 523
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	3 cut(s)	23, 453, 499
BseGI	GGATG	5 cut(s)	38, 372, 492, 509, 818
BseLI	CCNNNNNNNGG	4 cut(s)	29, 474, 642, 658
BseMII	CTCAG	2 cut(s)	89, 377
BseNI	ACTGG	2 cut(s)	468, 523
BseRI	GAGGAG	1 cut(s)	552
BseXI	GCAGC	4 cut(s)	50, 83, 165, 673
BseYI	CCCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	705
BshFI	GGCC	3 cut(s)	309, 478, 830
BsiSI	CCGG	2 cut(s)	428, 475
BslI	CCNNNNNNNGG	4 cut(s)	29, 474, 642, 658
BsmAI	GTCTC	3 cut(s)	382, 705, 872
BsmBI	CGTCTC	2 cut(s)	705, 872
BsmI	GAATGC	1 cut(s)	689
BsnI	GGCC	3 cut(s)	309, 478, 830
Bsp119I	TTCGAA	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp143I	GATC	3 cut(s)	6, 196, 283
Bsp19I	CCATGG	1 cut(s)	23
Bsp68I	TCGCGA	1 cut(s)	705
BspACI	CCGC	4 cut(s)	178, 321, 329, 365
BspANI	GGCC	3 cut(s)	309, 478, 830
BspCNI	CTCAG	2 cut(s)	88, 378
BspFNI	CGCG	1 cut(s)	705
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	204, 291
BspT104I	TTCGAA	1 cut(s)	516
BsrI	ACTGG	2 cut(s)	468, 523
BssECI	CCNNGG	3 cut(s)	23, 453, 499
BssMI	GATC	3 cut(s)	6, 196, 283
BssT1I	CCWWGG	2 cut(s)	23, 453
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	3 cut(s)	94, 393, 463
BstBI	TTCGAA	1 cut(s)	516
BstDEI	CTNAG	2 cut(s)	75, 386
BstDSI	CCRYGG	2 cut(s)	23, 499
BstEII	GGTNACC	1 cut(s)	457
BstF5I	GGATG	5 cut(s)	38, 372, 492, 509, 818
BstFNI	CGCG	1 cut(s)	705
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	3 cut(s)	9, 199, 286
BstMAI	GTCTC	3 cut(s)	382, 705, 872
BstMBI	GATC	3 cut(s)	6, 196, 283
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstNI	CCWGG	1 cut(s)	762
BstPI	GGTNACC	1 cut(s)	457
BstSCI	CCNGG	3 cut(s)	426, 473, 760
BstSFI	CTRYAG	1 cut(s)	303
BstUI	CGCG	1 cut(s)	705
BstV1I	GCAGC	4 cut(s)	50, 83, 165, 673
BstV2I	GAAGAC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	3 cut(s)	309, 478, 830
BtgI	CCRYGG	2 cut(s)	23, 499
BtgZI	GCGATG	2 cut(s)	254, 822
BtsCI	GGATG	5 cut(s)	38, 372, 492, 509, 818
BtsI	GCAGTG	1 cut(s)	163
BtsIMutI	CAGTG	4 cut(s)	11, 163, 383, 913
BtuMI	TCGCGA	1 cut(s)	705
CciI	TCATGA	1 cut(s)	726
CfoI	GCGC	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	477, 791
CseI	GACGC	2 cut(s)	233, 854
Csp6I	GTAC	1 cut(s)	471
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviAII	CATG	6 cut(s)	24, 182, 298, 653, 727, 848
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	2 cut(s)	75, 386
DpnI	GATC	3 cut(s)	8, 198, 285
DpnII	GATC	3 cut(s)	6, 196, 283
EaeI	YGGCCR	1 cut(s)	828
EciI	GGCGGA	1 cut(s)	167
Eco130I	CCWWGG	2 cut(s)	23, 453
Eco147I	AGGCCT	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	791
Eco91I	GGTNACC	1 cut(s)	457
EcoO65I	GGTNACC	1 cut(s)	457
EcoRI	GAATTC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	760
EcoT14I	CCWWGG	2 cut(s)	23, 453
EcoT38I	GRGCYC	1 cut(s)	562
ErhI	CCWWGG	2 cut(s)	23, 453
Esp3I	CGTCTC	2 cut(s)	705, 872
FaeI	CATG	6 cut(s)	27, 185, 301, 656, 730, 851
FatI	CATG	6 cut(s)	23, 181, 297, 652, 726, 847
FauI	CCCGC	2 cut(s)	328, 336
FblI	GTMKAC	1 cut(s)	270
Fnu4HI	GCNGC	4 cut(s)	39, 72, 154, 687
FokI	GGATG	5 cut(s)	45, 359, 479, 516, 805
FriOI	GRGCYC	1 cut(s)	562
Fsp4HI	GCNGC	4 cut(s)	39, 72, 154, 687
FspBI	CTAG	1 cut(s)	617
FspI	TGCGCA	1 cut(s)	37
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	4 cut(s)	39, 72, 154, 687
GsaI	CCCAGC	1 cut(s)	196
HaeIII	GGCC	3 cut(s)	309, 478, 830
HapII	CCGG	2 cut(s)	428, 475
HgaI	GACGC	2 cut(s)	233, 854
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	6 cut(s)	27, 185, 301, 656, 730, 851
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HinfI	GANTC	2 cut(s)	316, 903
HpaII	CCGG	2 cut(s)	428, 475
HphI	GGTGA	2 cut(s)	12, 469
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	6 cut(s)	212, 248, 281, 313, 704, 727
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	2 cut(s)	351, 897
HpyCH4III	ACNGT	3 cut(s)	94, 393, 463
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	6 cut(s)	71, 492, 593, 689, 842, 913
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	2 cut(s)	75, 386
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	6 cut(s)	27, 185, 301, 656, 730, 851
HspAI	GCGC	1 cut(s)	36
Kzo9I	GATC	3 cut(s)	6, 196, 283
LmnI	GCTCC	3 cut(s)	429, 565, 763
Lsp1109I	GCAGC	4 cut(s)	50, 83, 165, 673
LweI	GCATC	5 cut(s)	23, 231, 381, 494, 501
MaeI	CTAG	1 cut(s)	617
MaeII	ACGT	1 cut(s)	67
MaeIII	GTNAC	4 cut(s)	381, 457, 463, 674
MalI	GATC	3 cut(s)	8, 198, 285
MboI	GATC	3 cut(s)	6, 196, 283
MboII	GAAGA	4 cut(s)	176, 179, 742, 885
MfeI	CAATTG	1 cut(s)	640
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	5 cut(s)	16, 43, 106, 549, 640
MnlI	CCTC	9 cut(s)	23, 138, 208, 320, 390, 549, 573, 601, 833
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	2 cut(s)	105, 359
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	2 cut(s)	428, 475
MspR9I	CCNGG	3 cut(s)	428, 475, 762
MunI	CAATTG	1 cut(s)	640
Mva1269I	GAATGC	1 cut(s)	689
MvaI	CCWGG	1 cut(s)	762
MvnI	CGCG	1 cut(s)	705
MwoI	GCNNNNNNNGC	1 cut(s)	337
NciI	CCSGG	2 cut(s)	428, 475
NcoI	CCATGG	1 cut(s)	23
NdeII	GATC	3 cut(s)	6, 196, 283
NlaIII	CATG	6 cut(s)	27, 185, 301, 656, 730, 851
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	2 cut(s)	381, 457
NruI	TCGCGA	1 cut(s)	705
NsbI	TGCGCA	1 cut(s)	37
NspV	TTCGAA	1 cut(s)	516
PagI	TCATGA	1 cut(s)	726
PceI	AGGCCT	1 cut(s)	309
PctI	GAATGC	1 cut(s)	689
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	2 cut(s)	316, 903
PflMI	CCANNNNNTGG	2 cut(s)	642, 658
PkrI	GCNGC	4 cut(s)	40, 73, 155, 688
PsiI	TTATAA	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	760
PspEI	GGTNACC	1 cut(s)	457
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	2 cut(s)	477, 791
PsuI	RGATCY	1 cut(s)	196
RruI	TCGCGA	1 cut(s)	705
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
SaqAI	TTAA	2 cut(s)	105, 359
SatI	GCNGC	4 cut(s)	39, 72, 154, 687
Sau3AI	GATC	3 cut(s)	6, 196, 283
Sau96I	GGNCC	2 cut(s)	477, 791
ScrFI	CCNGG	3 cut(s)	428, 475, 762
SduI	GDGCHC	1 cut(s)	562
SetI	ASST	6 cut(s)	58, 70, 76, 219, 233, 783
SfaNI	GCATC	5 cut(s)	23, 231, 381, 494, 501
SfcI	CTRYAG	1 cut(s)	303
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	1 cut(s)	791
Sse9I	AATT	5 cut(s)	16, 43, 106, 549, 640
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	4 cut(s)	178, 321, 329, 365
SspMI	CTAG	1 cut(s)	617
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	426, 473, 760
StyI	CCWWGG	2 cut(s)	23, 453
TaaI	ACNGT	3 cut(s)	94, 393, 463
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	4 cut(s)	5, 141, 516, 750
TasI	AATT	5 cut(s)	16, 43, 106, 549, 640
TfiI	GAWTC	2 cut(s)	316, 903
Tru1I	TTAA	2 cut(s)	105, 359
Tru9I	TTAA	2 cut(s)	105, 359
TscAI	CASTG	3 cut(s)	18, 163, 390
TseFI	GTSAC	2 cut(s)	381, 457
TseI	GCWGC	4 cut(s)	38, 71, 153, 686
Tsp45I	GTSAC	2 cut(s)	381, 457
TspDTI	ATGAA	7 cut(s)	78, 279, 428, 715, 743, 879, 896
TspGWI	ACGGA	3 cut(s)	516, 683, 804
TspRI	CASTG	3 cut(s)	18, 163, 390
Van91I	CCANNNNNTGG	2 cut(s)	642, 658
VpaK11BI	GGWCC	1 cut(s)	791
XapI	RAATTY	2 cut(s)	16, 43
XmiI	GTMKAC	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	1 cut(s)	617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.