Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000311.1

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

79621 .. 79986

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000311.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

atgtcagacccaaaacccagactagtctgttgcatcgttgacgtccacggcttccacaccaagctccaaaatctctggtccaatctcgaaatctccattccttcttcagacttcgccaccgccctcgtcatcttccttggtgagtactgcggtcgcggcccagacactaacgaagtccttgacttcttcgtcgtcctcccctccatatacccacgtcagagagacgtcttcatcgccggaaaccacgacttagccttcgccgccttcttgagagtcctgcctccgccgccggatgggtccgagttcgaggacagtgaagagaaggaaaccaccaacgaagagaccagacaccaacgaagtccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

121

Amino Acids

13.65

Weight (kDa)

4.71

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AatII	GACGTC	2 cut(s)	45, 228
AccII	CGCG	1 cut(s)	156
AciI	CCGC	6 cut(s)	120, 150, 156, 261, 284, 287
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	2 cut(s)	42, 225
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	293
AhlI	ACTAGT	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	215
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	216, 335
AoxI	GGCC	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	3 cut(s)	78, 158, 297
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	2 cut(s)	78, 297
BbsI	GAAGAC	1 cut(s)	220
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	216, 335
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	1 cut(s)	23
BisI	GCNGC	3 cut(s)	157, 261, 287
BlsI	GCNGC	3 cut(s)	158, 262, 288
BmcAI	AGTACT	1 cut(s)	146
Bme18I	GGWCC	2 cut(s)	78, 297
BmgBI	CACGTC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	78, 158, 297
BmiI	GGNNCC	1 cut(s)	298
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	289
BsaHI	GRCGYC	2 cut(s)	42, 225
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	2 cut(s)	46, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	46, 136
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	1 cut(s)	159
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	237, 290
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	2 cut(s)	216, 335
BsmBI	CGTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	159
Bso31I	GGTCTC	1 cut(s)	335
BspACI	CCGC	6 cut(s)	120, 150, 156, 261, 284, 287
BspANI	GGCC	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	298
BspTNI	GGTCTC	1 cut(s)	335
BssECI	CCNNGG	2 cut(s)	46, 136
BssNI	GRCGYC	2 cut(s)	42, 225
BssT1I	CCWWGG	1 cut(s)	136
Bst4CI	ACNGT	1 cut(s)	314
Bst6I	CTCTTC	2 cut(s)	312, 333
BstACI	GRCGYC	2 cut(s)	42, 225
BstDEI	CTNAG	1 cut(s)	250
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	156
BstMAI	GTCTC	2 cut(s)	216, 335
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	156, 260, 286
BstUI	CGCG	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	215
BtsCI	GGATG	1 cut(s)	298
BtsIMutI	CAGTG	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	78, 158, 297
Csp6I	GTAC	1 cut(s)	145
CviJI	RGCY	4 cut(s)	51, 64, 159, 254
CviKI_1	RGCY	4 cut(s)	51, 64, 159, 254
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	250
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	2 cut(s)	312, 333
EarI	CTCTTC	2 cut(s)	312, 333
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	136
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	78, 297
Eco57I	CTGAAG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
Esp3I	CGTCTC	1 cut(s)	216
FaiI	YATR	2 cut(s)	206, 208
Fnu4HI	GCNGC	3 cut(s)	157, 261, 287
FokI	GGATG	1 cut(s)	305
Fsp4HI	GCNGC	3 cut(s)	157, 261, 287
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	3 cut(s)	157, 261, 287
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	2 cut(s)	237, 290
Hin1I	GRCGYC	2 cut(s)	42, 225
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	2 cut(s)	237, 290
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	2 cut(s)	40, 46
Hpy188I	TCNGA	4 cut(s)	7, 109, 219, 301
Hpy188III	TCNNGA	2 cut(s)	86, 268
Hpy8I	GTNNAC	2 cut(s)	40, 46
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	111, 265, 274, 316
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4IV	ACGT	3 cut(s)	42, 214, 225
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	3 cut(s)	156, 260, 286
HpyF3I	CTNAG	1 cut(s)	250
HpySE526I	ACGT	3 cut(s)	42, 214, 225
Hsp92I	GRCGYC	2 cut(s)	42, 225
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	31, 61, 174, 250, 290, 303, 358
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	3 cut(s)	42, 214, 225
MboII	GAAGA	6 cut(s)	96, 124, 178, 220, 329, 350
MlyI	GAGTC	1 cut(s)	282
MnlI	CCTC	5 cut(s)	134, 206, 211, 291, 301
MspI	CCGG	2 cut(s)	237, 290
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	3 cut(s)	156, 260, 286
NlaIV	GGNNCC	1 cut(s)	298
PkrI	GCNGC	3 cut(s)	158, 262, 288
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	3 cut(s)	78, 158, 297
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SatI	GCNGC	3 cut(s)	157, 261, 287
Sau96I	GGNCC	3 cut(s)	78, 158, 297
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	1 cut(s)	282
SetI	ASST	4 cut(s)	45, 66, 217, 228
SfaNI	GCATC	1 cut(s)	42
SinI	GGWCC	2 cut(s)	78, 297
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
SpeI	ACTAGT	1 cut(s)	22
SsiI	CCGC	6 cut(s)	120, 150, 156, 261, 284, 287
SspMI	CTAG	1 cut(s)	23
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	314
TaiI	ACGT	3 cut(s)	45, 217, 228
TaqI	TCGA	2 cut(s)	87, 306
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	3 cut(s)	159, 263, 289
TscAI	CASTG	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	220
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	78, 297
XspI	CTAG	1 cut(s)	23
ZraI	GACGTC	2 cut(s)	43, 226
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.