Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001096.1

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

92508 .. 94875

Gene Structure 2368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001096.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

atgtcggacccaaaacccagactagtctgctgcatcggcgacgtccacggcttccacacgaagctccaaaacctctggtccaatctcgaaatctccatcccctcttcagacttcgccaccgccctcgtcatcttcctcggcgactactgcgaccacggcccagacaccaacaaagtcctcgacttcctcatcgccctcccgtcccgatacccacgtcagaaacacgtcttcatcgccggaaaccacgacttcgccttcgccggcttcttgagagtcctgcctccgccggcggacgggtccgagttccgggaggggtggaaggagttcgaggaccgtgaggagagagaagggtggtttaagggcgaggggtacgagggaatgcacttgcaggggaggagatgggctgggactaccaaggggtttaacaaggctaaagggactgagtaccagggttccgtttataaagctgggcccacttttgagtcttacggagtgcctcatggctctgccgatctggtgaaggtagttcctgatgatcataagaagtttcttgccgatatggtttgggtgcatgaagaggatgatgtctgtgtagagattgagggtgaaaccaaacactgtaaattgattgccgtgcacgccggtttggagaaagatatagatgtcaaacaacagttggagtttctgaaagccagagatactcgggtacctaagataaaggctctgagtggcaggaaagacgtgtggaatataccagaggaactgaaaaagactcatactgttattgtaagtggacatcatgggaaacttcatattgaaggcttaaggctgatcattgatgaaggcgatggtatggcaaagaacccagtggctgcaattttactcccctctatgaaaataatccgtgatacagacgttttggcaaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

309

Amino Acids

34.66

Weight (kDa)

6.11

Isoelectric Point (pI)

36.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AatII	GACGTC	1 cut(s)	45
Acc65I	GGTACC	1 cut(s)	706
AccB1I	GGYRCC	1 cut(s)	706
AciI	CCGC	3 cut(s)	120, 284, 290
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	3 cut(s)	371, 446, 708
AfiI	CCNNNNNNNGG	2 cut(s)	293, 306
AflII	CTTAAG	1 cut(s)	823
AflIII	ACRYGT	2 cut(s)	223, 741
AgsI	TTSAA	1 cut(s)	818
AhlI	ACTAGT	1 cut(s)	22
AjiI	CACGTC	3 cut(s)	215, 226, 742
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	2 cut(s)	64, 467
AluI	AGCT	2 cut(s)	64, 467
Alw21I	GWGCWC	1 cut(s)	639
Alw44I	GTGCAC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	702
AoxI	GGCC	2 cut(s)	157, 470
ApaI	GGGCCC	1 cut(s)	474
ApaLI	GTGCAC	1 cut(s)	635
ApeKI	GCWGC	2 cut(s)	30, 872
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	323
Asp718I	GGTACC	1 cut(s)	706
AspS9I	GGNCC	7 cut(s)	7, 78, 158, 297, 331, 470, 471
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	529, 617
AvaI	CYCGRG	1 cut(s)	702
AvaII	GGWCC	4 cut(s)	7, 78, 297, 331
BaeGI	GKGCMC	2 cut(s)	474, 639
BaeI	ACNNNNGTAYC	7 cut(s)	199, 232, 690, 690, 723, 723, 900
BanI	GGYRCC	1 cut(s)	706
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	220
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	17, 859
BccI	CCATC	3 cut(s)	104, 393, 842
BceAI	ACGGC	3 cut(s)	64, 172, 617
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	2 cut(s)	535, 831
BcnI	CCSGG	1 cut(s)	308
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	2 cut(s)	23, 928
BfrI	CTTAAG	1 cut(s)	823
BisI	GCNGC	2 cut(s)	31, 873
BlsI	GCNGC	2 cut(s)	32, 874
Bme1390I	CCNGG	2 cut(s)	308, 449
Bme18I	GGWCC	4 cut(s)	7, 78, 297, 331
BmeT110I	CYCGRG	1 cut(s)	702
BmgBI	CACGTC	3 cut(s)	215, 226, 742
BmgT120I	GGNCC	7 cut(s)	7, 78, 158, 297, 331, 470, 471
BmiI	GGNNCC	5 cut(s)	9, 298, 454, 472, 708
BmrFI	CCNGG	2 cut(s)	308, 449
BmrI	ACTGGG	1 cut(s)	860
BmsI	GCATC	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	860
BpiI	GAAGAC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	289
BpuMI	CCSGG	1 cut(s)	308
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	5 cut(s)	46, 136, 154, 414, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 306
Bse118I	RCCGGY	3 cut(s)	260, 286, 641
Bse1I	ACTGG	1 cut(s)	866
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	5 cut(s)	46, 136, 154, 414, 448
BseGI	GGATG	2 cut(s)	96, 586
BseLI	CCNNNNNNNGG	2 cut(s)	293, 306
BseMII	CTCAG	2 cut(s)	432, 716
BseNI	ACTGG	1 cut(s)	866
BseRI	GAGGAG	2 cut(s)	353, 409
BseSI	GKGCMC	2 cut(s)	474, 639
BseXI	GCAGC	2 cut(s)	17, 859
BseYI	CCCAGC	2 cut(s)	404, 467
BshFI	GGCC	2 cut(s)	159, 472
BshNI	GGYRCC	1 cut(s)	706
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	702
BsiSI	CCGG	5 cut(s)	237, 261, 287, 307, 642
BslFI	GGGAC	3 cut(s)	187, 421, 451
BslI	CCNNNNNNNGG	2 cut(s)	293, 306
BsmFI	GGGAC	3 cut(s)	187, 421, 451
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	2 cut(s)	159, 472
BsoBI	CYCGRG	1 cut(s)	702
Bsp120I	GGGCCC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	474, 639
Bsp143I	GATC	3 cut(s)	511, 535, 831
BspACI	CCGC	3 cut(s)	120, 284, 290
BspANI	GGCC	2 cut(s)	159, 472
BspCNI	CTCAG	2 cut(s)	433, 717
BspLI	GGNNCC	5 cut(s)	9, 298, 454, 472, 708
BspT107I	GGYRCC	1 cut(s)	706
BspTI	CTTAAG	1 cut(s)	823
BsrFI	RCCGGY	3 cut(s)	260, 286, 641
BsrI	ACTGG	1 cut(s)	866
BssAI	RCCGGY	3 cut(s)	260, 286, 641
BssECI	CCNNGG	5 cut(s)	46, 136, 154, 414, 448
BssMI	GATC	3 cut(s)	511, 535, 831
BssNI	GRCGYC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	4 cut(s)	335, 620, 675, 781
Bst6I	CTCTTC	2 cut(s)	109, 570
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	823
BstC8I	GCNNGC	3 cut(s)	262, 288, 639
BstDEI	CTNAG	3 cut(s)	441, 711, 725
BstDSI	CCRYGG	2 cut(s)	46, 154
BstF5I	GGATG	2 cut(s)	96, 586
BstKTI	GATC	3 cut(s)	514, 538, 834
BstMBI	GATC	3 cut(s)	511, 535, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	36, 147, 156, 638
BstNI	CCWGG	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	306, 447
BstSLI	GKGCMC	2 cut(s)	474, 639
BstV1I	GCAGC	2 cut(s)	17, 859
BstV2I	GAAGAC	1 cut(s)	220
BsuRI	GGCC	2 cut(s)	159, 472
BtgI	CCRYGG	2 cut(s)	46, 154
BtgZI	GCGATG	3 cut(s)	175, 217, 861
BtrI	CACGTC	3 cut(s)	215, 226, 742
BtsCI	GGATG	2 cut(s)	96, 586
BtsIMutI	CAGTG	2 cut(s)	616, 873
Cac8I	GCNNGC	3 cut(s)	262, 288, 639
CaiI	CAGNNNCTG	1 cut(s)	872
Cfr10I	RCCGGY	3 cut(s)	260, 286, 641
Cfr13I	GGNCC	7 cut(s)	7, 78, 158, 297, 331, 470, 471
Csp6I	GTAC	3 cut(s)	370, 445, 707
CviAII	CATG	3 cut(s)	500, 572, 800
CviQI	GTAC	3 cut(s)	370, 445, 707
DdeI	CTNAG	3 cut(s)	441, 711, 725
DpnI	GATC	3 cut(s)	513, 537, 833
DpnII	GATC	3 cut(s)	511, 535, 831
Eam1104I	CTCTTC	2 cut(s)	109, 570
EarI	CTCTTC	2 cut(s)	109, 570
EciI	GGCGGA	2 cut(s)	273, 305
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	4 cut(s)	7, 78, 297, 331
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	702
EcoRII	CCWGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	503, 575, 803
FaqI	GGGAC	3 cut(s)	187, 421, 451
FatI	CATG	3 cut(s)	499, 571, 799
FbaI	TGATCA	2 cut(s)	535, 831
Fnu4HI	GCNGC	2 cut(s)	31, 873
FokI	GGATG	2 cut(s)	83, 593
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	2 cut(s)	31, 873
FspBI	CTAG	2 cut(s)	23, 928
GluI	GCNGC	2 cut(s)	31, 873
GsaI	CCCAGC	2 cut(s)	408, 471
HaeIII	GGCC	2 cut(s)	159, 472
HapII	CCGG	5 cut(s)	237, 261, 287, 307, 642
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	3 cut(s)	503, 575, 803
HinfI	GANTC	3 cut(s)	273, 482, 772
HpaII	CCGG	5 cut(s)	237, 261, 287, 307, 642
HphI	GGTGA	2 cut(s)	529, 617
Hpy166II	GTNNAC	3 cut(s)	46, 637, 794
Hpy188I	TCNGA	6 cut(s)	7, 109, 219, 301, 687, 726
Hpy188III	TCNNGA	4 cut(s)	86, 204, 268, 530
Hpy8I	GTNNAC	3 cut(s)	46, 637, 794
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	6 cut(s)	265, 313, 341, 514, 812, 836
HpyCH4III	ACNGT	4 cut(s)	335, 620, 675, 781
HpyCH4IV	ACGT	5 cut(s)	42, 214, 225, 741, 915
HpyCH4V	TGCA	6 cut(s)	33, 382, 388, 571, 637, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	36, 147, 156, 638
HpyF3I	CTNAG	3 cut(s)	441, 711, 725
HpySE526I	ACGT	5 cut(s)	42, 214, 225, 741, 915
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	503, 575, 803
KpnI	GGTACC	1 cut(s)	710
KroI	GCCGGC	2 cut(s)	260, 286
KroNI	GCCGGC	2 cut(s)	262, 288
Ksp22I	TGATCA	2 cut(s)	535, 831
Kzo9I	GATC	3 cut(s)	511, 535, 831
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	2 cut(s)	17, 859
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	2 cut(s)	23, 928
MaeII	ACGT	5 cut(s)	42, 214, 225, 741, 915
MalI	GATC	3 cut(s)	513, 537, 833
MboI	GATC	3 cut(s)	511, 535, 831
MboII	GAAGA	4 cut(s)	96, 124, 220, 587
MhlI	GDGCHC	2 cut(s)	474, 639
MluCI	AATT	2 cut(s)	623, 876
MlyI	GAGTC	3 cut(s)	282, 491, 766
MmeI	TCCRAC	1 cut(s)	657
MreI	CGCCGGCG	1 cut(s)	286
MroNI	GCCGGC	2 cut(s)	260, 286
MroXI	GAANNNNTTC	1 cut(s)	323
MseI	TTAA	3 cut(s)	357, 423, 824
MspCI	CTTAAG	1 cut(s)	823
MspI	CCGG	5 cut(s)	237, 261, 287, 307, 642
MspR9I	CCNGG	2 cut(s)	308, 449
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	4 cut(s)	36, 147, 156, 638
NaeI	GCCGGC	2 cut(s)	262, 288
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	511, 535, 831
NgoMIV	GCCGGC	2 cut(s)	260, 286
NlaIII	CATG	3 cut(s)	503, 575, 803
NlaIV	GGNNCC	5 cut(s)	9, 298, 454, 472, 708
NmeAIII	GCCGAG	1 cut(s)	117
PctI	GAATGC	1 cut(s)	384
PdiI	GCCGGC	2 cut(s)	262, 288
PdmI	GAANNNNTTC	1 cut(s)	323
PfoI	TCCNGGA	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	32, 874
PleI	GAGTC	3 cut(s)	281, 490, 766
PpsI	GAGTC	3 cut(s)	281, 490, 766
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	447
PspFI	CCCAGC	2 cut(s)	404, 467
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	5 cut(s)	9, 298, 454, 472, 708
PspOMI	GGGCCC	1 cut(s)	470
PspPI	GGNCC	7 cut(s)	7, 78, 158, 297, 331, 470, 471
PstNI	CAGNNNCTG	1 cut(s)	872
RsaI	GTAC	3 cut(s)	371, 446, 708
RsaNI	GTAC	3 cut(s)	370, 445, 707
SaqAI	TTAA	3 cut(s)	357, 423, 824
SatI	GCNGC	2 cut(s)	31, 873
Sau3AI	GATC	3 cut(s)	511, 535, 831
Sau96I	GGNCC	7 cut(s)	7, 78, 158, 297, 331, 470, 471
SchI	GAGTC	3 cut(s)	282, 491, 766
ScrFI	CCNGG	2 cut(s)	308, 449
SduI	GDGCHC	2 cut(s)	474, 639
SfaNI	GCATC	1 cut(s)	42
SgrAI	CRCCGGYG	1 cut(s)	286
SinI	GGWCC	4 cut(s)	7, 78, 297, 331
SmlI	CTYRAG	2 cut(s)	268, 823
SmoI	CTYRAG	2 cut(s)	268, 823
SpeI	ACTAGT	1 cut(s)	22
Sse9I	AATT	2 cut(s)	623, 876
SsiI	CCGC	3 cut(s)	120, 284, 290
SspMI	CTAG	2 cut(s)	23, 928
StyD4I	CCNGG	2 cut(s)	306, 447
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	4 cut(s)	335, 620, 675, 781
TaiI	ACGT	5 cut(s)	45, 217, 228, 744, 918
TaqI	TCGA	3 cut(s)	87, 180, 327
TasI	AATT	2 cut(s)	623, 876
Tru1I	TTAA	3 cut(s)	357, 423, 824
Tru9I	TTAA	3 cut(s)	357, 423, 824
TscAI	CASTG	2 cut(s)	623, 873
TseI	GCWGC	2 cut(s)	30, 872
TspDTI	ATGAA	5 cut(s)	220, 588, 800, 855, 908
TspGWI	ACGGA	3 cut(s)	445, 504, 893
TspRI	CASTG	2 cut(s)	623, 873
Vha464I	CTTAAG	1 cut(s)	823
VneI	GTGCAC	1 cut(s)	635
VpaK11BI	GGWCC	4 cut(s)	7, 78, 297, 331
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	2 cut(s)	23, 928
ZraI	GACGTC	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.