Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Reverse (-)

8521475 .. 8522443

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTTAACCAAATCGCACCTTCCAACAATCCAACCATGTCAGACCCAAAACCCAGACTAGTCTGTTGCATCGGCGACGTCCATGGCTTCCACACCAAGCTCCAAAATCTCTGGTCCAATCTCGAAATCTCCATCCCTTCTTCAGACTTCGCCACCGCCCTCGTCATCTTCCTCGGCGACTACTGCAGCCGCGACCCTGACACCAACGAAGTCCTTGACTTCTTCGTCGCTCTCCCCTCCAGATACCCACATCAGAAAGACGTCTTCATCGCCGGAAACCATGACTTCGCCTTCGCCGCCTTGTTGAGAGTCCTGCCTCTGCCACCGAACGGGTCCGAGTTCCGCGAGGGGTGGAAGGAGTTCGAGGACAAGGAGGAGAGAGAAAAAGATCTGGAGACAGAGAGAGGGCAAGAAGATGTAAAAAGAAAAAGAGAGAAAAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

148

Amino Acids

17.08

Weight (kDa)

5.4

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	21 - 123	3.8e-11	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AatII	GACGTC	2 cut(s)	81, 264
AccII	CGCG	2 cut(s)	192, 345
AciI	CCGC	4 cut(s)	156, 190, 297, 343
AcuI	CTGAAG	1 cut(s)	126
AcyI	GRCGYC	2 cut(s)	78, 261
AfiI	CCNNNNNNNGG	1 cut(s)	329
AhlI	ACTAGT	1 cut(s)	58
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	186
ArsI	GACNNNNNNTTYG	2 cut(s)	275, 307
Asp700I	GAANNNNTTC	1 cut(s)	359
AspS9I	GGNCC	2 cut(s)	114, 333
AvaII	GGWCC	2 cut(s)	114, 333
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	198
BccI	CCATC	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	58
BfaI	CTAG	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	184
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	187, 190, 297
BlsI	GCNGC	3 cut(s)	188, 191, 298
Bme18I	GGWCC	2 cut(s)	114, 333
BmgT120I	GGNCC	2 cut(s)	114, 333
BmiI	GGNNCC	1 cut(s)	334
BmsI	GCATC	1 cut(s)	78
BpiI	GAAGAC	1 cut(s)	256
BpmI	CTGGAG	2 cut(s)	223, 413
BsaHI	GRCGYC	2 cut(s)	78, 261
BsaJI	CCNNGG	2 cut(s)	82, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	82, 172
BseGI	GGATG	1 cut(s)	132
BseLI	CCNNNNNNNGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	1 cut(s)	198
Bsh1236I	CGCG	2 cut(s)	192, 345
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	389
Bsp143I	GATC	1 cut(s)	388
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	4 cut(s)	156, 190, 297, 343
BspFNI	CGCG	2 cut(s)	192, 345
BspLI	GGNNCC	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	82, 172
BssMI	GATC	1 cut(s)	388
BssNI	GRCGYC	2 cut(s)	78, 261
BssT1I	CCWWGG	1 cut(s)	82
BstACI	GRCGYC	2 cut(s)	78, 261
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	2 cut(s)	192, 345
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 296
BstSFI	CTRYAG	1 cut(s)	184
BstUI	CGCG	2 cut(s)	192, 345
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	82
BtgZI	GCGATG	1 cut(s)	253
BtsCI	GGATG	1 cut(s)	132
Cfr13I	GGNCC	2 cut(s)	114, 333
CviAII	CATG	3 cut(s)	37, 83, 281
CviJI	RGCY	3 cut(s)	87, 100, 189
CviKI_1	RGCY	3 cut(s)	87, 100, 189
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	114, 333
Eco57I	CTGAAG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	3 cut(s)	40, 86, 284
FaiI	YATR	3 cut(s)	38, 84, 282
FatI	CATG	3 cut(s)	36, 82, 280
Fnu4HI	GCNGC	3 cut(s)	187, 190, 297
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	187, 190, 297
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	3 cut(s)	187, 190, 297
GsuI	CTGGAG	2 cut(s)	223, 413
HapII	CCGG	1 cut(s)	273
Hin1I	GRCGYC	2 cut(s)	78, 261
Hin1II	CATG	3 cut(s)	40, 86, 284
HinfI	GANTC	1 cut(s)	309
HpaII	CCGG	1 cut(s)	273
Hpy188I	TCNGA	4 cut(s)	43, 145, 255, 337
Hpy188III	TCNNGA	3 cut(s)	122, 240, 392
Hpy99I	CGWCG	2 cut(s)	80, 230
HpyAV	CCTTC	4 cut(s)	30, 147, 301, 349
HpyCH4IV	ACGT	2 cut(s)	78, 261
HpyCH4V	TGCA	2 cut(s)	69, 186
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 296
HpySE526I	ACGT	2 cut(s)	78, 261
Hsp92I	GRCGYC	2 cut(s)	78, 261
Hsp92II	CATG	3 cut(s)	40, 86, 284
Kzo9I	GATC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	7 cut(s)	67, 97, 210, 253, 286, 326, 377
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	78, 261
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	5 cut(s)	132, 160, 214, 256, 425
MflI	RGATCY	1 cut(s)	388
MlyI	GAGTC	1 cut(s)	318
MmeI	TCCRAC	2 cut(s)	48, 56
MnlI	CCTC	8 cut(s)	170, 182, 247, 327, 340, 358, 367, 398
MroXI	GAANNNNTTC	1 cut(s)	359
MseI	TTAA	1 cut(s)	6
MspI	CCGG	1 cut(s)	273
MvnI	CGCG	2 cut(s)	192, 345
MwoI	GCNNNNNNNGC	2 cut(s)	183, 296
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	3 cut(s)	40, 86, 284
NlaIV	GGNNCC	1 cut(s)	334
NmeAIII	GCCGAG	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	359
PkrI	GCNGC	3 cut(s)	188, 191, 298
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	334
PspPI	GGNCC	2 cut(s)	114, 333
PstI	CTGCAG	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	3 cut(s)	187, 190, 297
Sau3AI	GATC	1 cut(s)	388
Sau96I	GGNCC	2 cut(s)	114, 333
SchI	GAGTC	1 cut(s)	318
SetI	ASST	4 cut(s)	22, 81, 102, 264
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	184
SinI	GGWCC	2 cut(s)	114, 333
SpeI	ACTAGT	1 cut(s)	58
SsiI	CCGC	4 cut(s)	156, 190, 297, 343
SspMI	CTAG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	82
TaiI	ACGT	2 cut(s)	81, 264
TaqI	TCGA	2 cut(s)	123, 363
TauI	GCSGC	2 cut(s)	192, 299
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	256
VpaK11BI	GGWCC	2 cut(s)	114, 333
XmnI	GAANNNNTTC	1 cut(s)	359
XspI	CTAG	1 cut(s)	59
ZraI	GACGTC	2 cut(s)	79, 262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.