Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000803

Physical Location & Seq

Genomic Coordinates Forward (+)

3802321 .. 3803433

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG055900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGTCAGACCCAAAACCCAAACTAGTCTGTAGCATCGGCGACGTCCACGGCTTCCACACCAAGCTCCAAAATCTCTGGTCCAATCTCGAAATCTCCATCCCTTCTTCAGACTTCGCCACCGCCCTCGTCATCTTCCTCGGCGACTACTGCGGCAGAGGCCCGGACACCAACGAAGTCCTTGACTTCTTCGTCGCTCTCCCCTCCAGATACCCACATCAGAAAGACGTCTTCATCGCCGGAAACCATGACTTCGCCTTCGCCGCCTTGTTGAGAGTCCTGCCTCTGCCACCGGATGGGTCCGAGTTCCGCGAGGGGTGGAAGGAGTTCGAGGACAGGGAGGAGAGAGAGAAAGATCTGGAGACAGAGAGAGGGCAAGAAGATGTAAAAAGAAAGAGAGAAAAGAAGATAACAAAGAGGAAATCGGAGAAAGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

145

Amino Acids

16.7

Weight (kDa)

5.62

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	12 - 110	3.7e-11	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000803)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09970 AT3G09970
fragaria_vesca	FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140 FvH4_6g18140
malus_domestica	MD12G1020700.v1.1 MD14G1018000.v1.1
prunus_persica	Prupe.3G199100_v2.0.a1 Prupe.7G115300_v2.0.a1
pyrus_communis	pycom12g01940
rosa_chinensis	RchiOBHm_Chr3g0472431 RchiOBHm_Chr3g0472441
rosa_laevigata	RLG00000021355 RLG00000024079 RLG00000024080
rosa_multiflora	Rmu_sc0000035.1_g000007 Rmu_sc0000058.1_g000003 Rmu_sc0000311.1_g000014 Rmu_sc0000617.1_g000041 Rmu_sc0000820.1_g000023 Rmu_sc0001096.1_g000016 Rmu_sc0001096.1_g000023 Rmu_sc0001488.1_g000014 Rmu_sc0002798.1_g000005 Rmu_sc0003363.1_g000076 Rmu_sc0004185.1_g000006 Rmu_sc0004790.1_g000009 Rmu_sc0004941.1_g000015 Rmu_sc0006705.1_g000013 Rmu_sc0013245.1_g000014 Rmu_sc0018288.1_g000001 Rmu_sc0018288.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408910 Rroxscaffold_6G00408920
rosa_rugosa	Rorug03G0125000 Rorug03G0125100 Rorug03G0125200 Rorug03G0125300 Rorug05G0556700
rosa_samantha	Rh1AG050800 Rh2AG267200 Rh2DG188700 Rh2DG274200 Rh3AG053900 Rh3AG177300 Rh3AG177400 Rh3AG244900 Rh3BG203200 Rh3BG203300 Rh3CG193600 Rh3CG193700 Rh3CG200700 Rh3CG200800 Rh3DG055900 Rh3DG171800 Rh3DG171900 Rh4CG267100 Rh4DG237500 Rh5BG060700 Rh6BG122000 Rh6CG120200 Rh6DG108000 Rh7AG396900 Rh7BG062000
rosa_wichuraiana	Rw3G016420 Rw3G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AatII	GACGTC	2 cut(s)	45, 228
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccII	CGCG	1 cut(s)	309
AciI	CCGC	4 cut(s)	120, 150, 261, 307
AcuI	CTGAAG	1 cut(s)	90
AcyI	GRCGYC	2 cut(s)	42, 225
AfiI	CCNNNNNNNGG	1 cut(s)	293
AhlI	ACTAGT	1 cut(s)	22
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	78, 158, 297
AsuC2I	CCSGG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	78, 297
BbsI	GAAGAC	1 cut(s)	220
BccI	CCATC	2 cut(s)	104, 287
BceAI	ACGGC	1 cut(s)	64
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	353
BcuI	ACTAGT	1 cut(s)	22
BfaI	CTAG	1 cut(s)	23
BfmI	CTRYAG	1 cut(s)	28
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	2 cut(s)	151, 261
BlsI	GCNGC	2 cut(s)	152, 262
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	78, 297
BmgT120I	GGNCC	3 cut(s)	78, 158, 297
BmiI	GGNNCC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	2 cut(s)	187, 377
BpuMI	CCSGG	1 cut(s)	161
BsaHI	GRCGYC	2 cut(s)	42, 225
BsaJI	CCNNGG	2 cut(s)	46, 136
BsaWI	WCCGGW	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	46, 136
BseGI	GGATG	2 cut(s)	96, 298
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	353
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	3 cut(s)	161, 237, 290
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	353
BsnI	GGCC	1 cut(s)	159
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	4 cut(s)	120, 150, 261, 307
BspANI	GGCC	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	298
BssECI	CCNNGG	2 cut(s)	46, 136
BssMI	GATC	1 cut(s)	352
BssNI	GRCGYC	2 cut(s)	42, 225
BstACI	GRCGYC	2 cut(s)	42, 225
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	96, 298
BstFNI	CGCG	1 cut(s)	309
BstKTI	GATC	1 cut(s)	355
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	147, 156, 260
BstSCI	CCNGG	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	28
BstUI	CGCG	1 cut(s)	309
BstV2I	GAAGAC	1 cut(s)	220
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	217
BtsCI	GGATG	2 cut(s)	96, 298
Cfr13I	GGNCC	3 cut(s)	78, 158, 297
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	3 cut(s)	51, 64, 159
CviKI_1	RGCY	3 cut(s)	51, 64, 159
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eco47I	GGWCC	2 cut(s)	78, 297
Eco57I	CTGAAG	1 cut(s)	90
FaeI	CATG	1 cut(s)	248
FaiI	YATR	2 cut(s)	246, 434
FatI	CATG	1 cut(s)	244
Fnu4HI	GCNGC	2 cut(s)	151, 261
FokI	GGATG	2 cut(s)	83, 305
Fsp4HI	GCNGC	2 cut(s)	151, 261
FspBI	CTAG	1 cut(s)	23
GluI	GCNGC	2 cut(s)	151, 261
GsuI	CTGGAG	2 cut(s)	187, 377
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	3 cut(s)	161, 237, 290
Hin1I	GRCGYC	2 cut(s)	42, 225
Hin1II	CATG	1 cut(s)	248
HinfI	GANTC	1 cut(s)	273
HpaII	CCGG	3 cut(s)	161, 237, 290
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	5 cut(s)	7, 109, 219, 301, 424
Hpy188III	TCNNGA	3 cut(s)	86, 204, 356
Hpy8I	GTNNAC	1 cut(s)	46
Hpy99I	CGWCG	2 cut(s)	44, 194
HpyAV	CCTTC	3 cut(s)	111, 265, 313
HpyCH4IV	ACGT	2 cut(s)	42, 225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	147, 156, 260
HpySE526I	ACGT	2 cut(s)	42, 225
Hsp92I	GRCGYC	2 cut(s)	42, 225
Hsp92II	CATG	1 cut(s)	248
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	8 cut(s)	61, 174, 217, 250, 290, 303, 319, 341
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	23
MaeII	ACGT	2 cut(s)	42, 225
MalI	GATC	1 cut(s)	354
MboI	GATC	1 cut(s)	352
MboII	GAAGA	6 cut(s)	96, 124, 178, 220, 389, 415
MflI	RGATCY	1 cut(s)	352
MlyI	GAGTC	1 cut(s)	282
MroXI	GAANNNNTTC	1 cut(s)	323
MspI	CCGG	3 cut(s)	161, 237, 290
MspR9I	CCNGG	1 cut(s)	161
MvnI	CGCG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	147, 156, 260
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	1 cut(s)	248
NlaIV	GGNNCC	1 cut(s)	298
NmeAIII	GCCGAG	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	152, 262
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PspN4I	GGNNCC	1 cut(s)	298
PspPI	GGNCC	3 cut(s)	78, 158, 297
PsuI	RGATCY	1 cut(s)	352
SatI	GCNGC	2 cut(s)	151, 261
Sau3AI	GATC	1 cut(s)	352
Sau96I	GGNCC	3 cut(s)	78, 158, 297
SchI	GAGTC	1 cut(s)	282
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	3 cut(s)	45, 66, 228
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	28
SinI	GGWCC	2 cut(s)	78, 297
SpeI	ACTAGT	1 cut(s)	22
SsiI	CCGC	4 cut(s)	120, 150, 261, 307
SspMI	CTAG	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	159
TaiI	ACGT	2 cut(s)	45, 228
TaqI	TCGA	2 cut(s)	87, 327
TauI	GCSGC	2 cut(s)	153, 263
TspDTI	ATGAA	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	2 cut(s)	78, 297
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	1 cut(s)	23
ZraI	GACGTC	2 cut(s)	43, 226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.